SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    851001 8p4o:E (3.04) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    851002 8p4o:F (3.04) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    851003 8p4o:F (3.04) BS02 BEF N/A GO:0000287 ... P0A6F5 39169181
    851004 8p4o:G (3.04) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    851005 8p4o:G (3.04) BS02 BEF N/A GO:0000287 ... P0A6F5 39169181
    851006 8p4p:A (9.6) BS01 ATP N/A GO:0005524 ... A0A140NH65 39169181
    851007 8p4p:B (9.6) BS01 ATP N/A GO:0005524 ... A0A140NH65 39169181
    851008 8p4p:C (9.6) BS01 ATP N/A GO:0005524 ... A0A140NH65 39169181
    851009 8p4p:D (9.6) BS01 ATP N/A GO:0005524 ... A0A140NH65 39169181
    851010 8p4p:E (9.6) BS01 ATP N/A GO:0005524 ... A0A140NH65 39169181
    851011 8p4p:F (9.6) BS01 ATP N/A GO:0005524 ... A0A140NH65 39169181
    851012 8p4p:G (9.6) BS01 ATP N/A GO:0005524 ... A0A140NH65 39169181
    851013 8p4p:H (9.6) BS01 ADP N/A GO:0005524 ... A0A140NH65 39169181
    851014 8p4p:I (9.6) BS01 ADP N/A GO:0005524 ... A0A140NH65 39169181
    851015 8p4p:J (9.6) BS01 ADP N/A GO:0005524 ... A0A140NH65 39169181
    851016 8p4p:K (9.6) BS01 ADP N/A GO:0005524 ... A0A140NH65 39169181
    851017 8p4p:L (9.6) BS01 ADP N/A GO:0005524 ... A0A140NH65 39169181
    851018 8p4p:M (9.6) BS01 ADP N/A GO:0005524 ... A0A140NH65 39169181
    851019 8p4p:N (9.6) BS01 ADP N/A GO:0005524 ... A0A140NH65 39169181
    851020 8p4q:A (1.88) BS01 IMP ? GO:0000166 ... P73853 37875114
    851021 8p4q:A (1.88) BS02 XMP ? GO:0000166 ... P73853 37875114
    851022 8p4q:B (1.88) BS01 IMP ? GO:0000166 ... P73853 37875114
    851023 8p4q:B (1.88) BS02 XMP ? GO:0000166 ... P73853 37875114
    851024 8p4q:C (1.88) BS01 IMP ? GO:0000166 ... P73853 37875114
    851025 8p4q:C (1.88) BS02 XMP ? GO:0000166 ... P73853 37875114
    851026 8p4q:D (1.88) BS01 IMP ? GO:0000166 ... P73853 37875114
    851027 8p4q:D (1.88) BS02 XMP ? GO:0000166 ... P73853 37875114
    851028 8p4q:E (1.88) BS01 IMP ? GO:0000166 ... P73853 37875114
    851029 8p4q:E (1.88) BS02 XMP ? GO:0000166 ... P73853 37875114
    851030 8p4q:F (1.88) BS01 IMP ? GO:0000166 ... P73853 37875114
    851031 8p4q:F (1.88) BS02 XMP ? GO:0000166 ... P73853 37875114
    851032 8p4q:G (1.88) BS01 IMP ? GO:0000166 ... P73853 37875114
    851033 8p4q:G (1.88) BS02 XMP ? GO:0000166 ... P73853 37875114
    851034 8p4q:H (1.88) BS01 IMP ? GO:0000166 ... P73853 37875114
    851035 8p4q:H (1.88) BS02 XMP ? GO:0000166 ... P73853 37875114
    851036 8p4r:A (11.9) BS01 ATP N/A GO:0005524 ... A0A140NH65 39169181
    851037 8p4r:B (11.9) BS01 ATP N/A GO:0005524 ... A0A140NH65 39169181
    851038 8p4r:C (11.9) BS01 ATP N/A GO:0005524 ... A0A140NH65 39169181
    851039 8p4r:D (11.9) BS01 ATP N/A GO:0005524 ... A0A140NH65 39169181
    851040 8p4r:E (11.9) BS01 ATP N/A GO:0005524 ... A0A140NH65 39169181
    851041 8p4r:F (11.9) BS01 ATP N/A GO:0005524 ... A0A140NH65 39169181
    851042 8p4r:G (11.9) BS01 ATP N/A GO:0005524 ... A0A140NH65 39169181
    851043 8p4r:H (11.9) BS01 ATP N/A GO:0005524 ... A0A140NH65 39169181
    851044 8p4r:I (11.9) BS01 ATP N/A GO:0005524 ... A0A140NH65 39169181
    851045 8p4r:J (11.9) BS01 ATP N/A GO:0005524 ... A0A140NH65 39169181
    851046 8p4r:K (11.9) BS01 ATP N/A GO:0005524 ... A0A140NH65 39169181
    851047 8p4r:L (11.9) BS01 ATP N/A GO:0005524 ... A0A140NH65 39169181
    851048 8p4r:M (11.9) BS01 ATP N/A GO:0005524 ... A0A140NH65 39169181
    851049 8p4r:N (11.9) BS01 ATP N/A GO:0005524 ... A0A140NH65 39169181
    851050 8p4v:0 (3.16) BS01 rna N/A GO:0002181 ... P0CX23 N/A
    851051 8p4v:0 (3.16) BS02 rna N/A GO:0002181 ... P0CX23 N/A
    851052 8p4v:2 (3.16) BS01 rna N/A GO:0002181 ... Q02753 N/A
    851053 8p4v:2 (3.16) BS02 rna N/A GO:0002181 ... Q02753 N/A
    851054 8p4v:2 (3.16) BS03 OHX N/A GO:0002181 ... Q02753 N/A
    851055 8p4v:5 (3.16) BS01 rna N/A GO:0002181 ... P05749 N/A
    851056 8p4v:6 (3.16) BS01 rna N/A GO:0002181 ... P0CX41 N/A
    851057 8p4v:6 (3.16) BS02 rna N/A GO:0002181 ... P0CX41 N/A
    851058 8p4v:7 (3.16) BS01 rna N/A GO:0002181 ... P04449 N/A
    851059 8p4v:8 (3.16) BS01 rna N/A GO:0000027 ... P04456 N/A
    851060 8p4v:8 (3.16) BS02 rna N/A GO:0000027 ... P04456 N/A
    851061 8p4v:9 (3.16) BS01 rna N/A GO:0002181 ... P05743 N/A
    851062 8p4v:9 (3.16) BS02 rna N/A GO:0002181 ... P05743 N/A
    851063 8p4v:AA (3.16) BS01 rna N/A GO:0002181 ... P0C2H6 N/A
    851064 8p4v:AB (3.16) BS01 rna N/A GO:0002181 ... P02406 N/A
    851065 8p4v:AB (3.16) BS02 MG N/A GO:0002181 ... P02406 N/A
    851066 8p4v:AB (3.16) BS03 MG N/A GO:0002181 ... P02406 N/A
    851067 8p4v:AC (3.16) BS01 rna N/A GO:0002181 ... P05747 N/A
    851068 8p4v:AC (3.16) BS02 OHX N/A GO:0002181 ... P05747 N/A
    851069 8p4v:AD (3.16) BS01 rna N/A GO:0002181 ... P14120 N/A
    851070 8p4v:AE (3.16) BS01 rna N/A GO:0002181 ... P0C2H8 N/A
    851071 8p4v:AF (3.16) BS01 rna N/A GO:0002181 ... P38061 N/A
    851072 8p4v:AF (3.16) BS02 MG N/A GO:0002181 ... P38061 N/A
    851073 8p4v:AG (3.16) BS01 rna N/A GO:0000027 ... P05744 N/A
    851074 8p4v:AG (3.16) BS02 OHX N/A GO:0000027 ... P05744 N/A
    851075 8p4v:AH (3.16) BS01 rna N/A GO:0002181 ... P87262 N/A
    851076 8p4v:AI (3.16) BS01 rna N/A GO:0000463 ... P0CX84 N/A
    851077 8p4v:AI (3.16) BS02 rna N/A GO:0000463 ... P0CX84 N/A
    851078 8p4v:AJ (3.16) BS01 rna N/A GO:0002181 ... P05745 N/A
    851079 8p4v:AK (3.16) BS01 rna N/A GO:0000448 ... P49166 N/A
    851080 8p4v:AK (3.16) BS02 rna N/A GO:0000448 ... P49166 N/A
    851081 8p4v:AK (3.16) BS03 OHX N/A GO:0000448 ... P49166 N/A
    851082 8p4v:AK (3.16) BS04 MG N/A GO:0000448 ... P49166 N/A
    851083 8p4v:AK (3.16) BS05 ZN N/A GO:0000448 ... P49166 N/A
    851084 8p4v:AK (3.16) BS06 OHX N/A GO:0000448 ... P49166 N/A
    851085 8p4v:AK (3.16) BS07 OHX N/A GO:0000448 ... P49166 N/A
    851086 8p4v:AL (3.16) BS01 rna N/A GO:0002181 ... P49167 N/A
    851087 8p4v:AM (3.16) BS01 rna N/A GO:0002181 ... P04650 N/A
    851088 8p4v:AM (3.16) BS02 rna N/A GO:0002181 ... P04650 N/A
    851089 8p4v:AN (3.16) BS01 rna N/A GO:0000027 ... P0CH08 N/A
    851090 8p4v:AN (3.16) BS02 ZN N/A GO:0000027 ... P0CH08 N/A
    851091 8p4v:AP (3.16) BS01 rna N/A GO:0002181 ... P0CX27 N/A
    851092 8p4v:AP (3.16) BS02 X1K N/A GO:0002181 ... P0CX27 N/A
    851093 8p4v:AP (3.16) BS03 ZN N/A GO:0002181 ... P0CX27 N/A
    851094 8p4v:AP (3.16) BS04 OHX N/A GO:0002181 ... P0CX27 N/A
    851095 8p4v:AQ (3.16) BS01 rna N/A GO:0002181 ... P0CX25 N/A
    851096 8p4v:AQ (3.16) BS02 ZN N/A GO:0002181 ... P0CX25 N/A
    851097 8p4v:B (3.16) BS01 rna N/A GO:0000028 ... P32905 N/A
    851098 8p4v:C (3.16) BS01 rna N/A GO:0000462 ... P33442 N/A
    851099 8p4v:C (3.16) BS02 OHX N/A GO:0000462 ... P33442 N/A
    851100 8p4v:CD (3.16) BS01 rna N/A GO:0002181 ... P0CX45 N/A
    851101 8p4v:CD (3.16) BS02 rna N/A GO:0002181 ... P0CX45 N/A
    851102 8p4v:CD (3.16) BS03 OHX N/A GO:0002181 ... P0CX45 N/A
    851103 8p4v:CE (3.16) BS01 rna N/A GO:0000027 ... P14126 N/A
    851104 8p4v:CE (3.16) BS02 OHX N/A GO:0000027 ... P14126 N/A
    851105 8p4v:CE (3.16) BS03 MG N/A GO:0000027 ... P14126 N/A
    851106 8p4v:CF (3.16) BS01 rna N/A GO:0002181 ... P10664 N/A
    851107 8p4v:CF (3.16) BS02 rna N/A GO:0002181 ... P10664 N/A
    851108 8p4v:CG (3.16) BS01 rna N/A GO:0000027 ... P26321 N/A
    851109 8p4v:CG (3.16) BS02 rna N/A GO:0000027 ... P26321 N/A
    851110 8p4v:CG (3.16) BS03 OHX N/A GO:0000027 ... P26321 N/A
    851111 8p4v:CH (3.16) BS01 rna N/A GO:0000027 ... Q02326 N/A
    851112 8p4v:CI (3.16) BS01 rna N/A GO:0000463 ... P05737 N/A
    851113 8p4v:CI (3.16) BS02 rna N/A GO:0000463 ... P05737 N/A
    851114 8p4v:CI (3.16) BS03 OHX N/A GO:0000463 ... P05737 N/A
    851115 8p4v:CJ (3.16) BS01 rna N/A GO:0000470 ... P17076 N/A
    851116 8p4v:CJ (3.16) BS02 rna N/A GO:0000470 ... P17076 N/A
    851117 8p4v:CK (3.16) BS01 rna N/A GO:0002181 ... P05738 N/A
    851118 8p4v:CL (3.16) BS01 rna N/A GO:0000027 ... P41805 N/A
    851119 8p4v:CL (3.16) BS02 rna N/A GO:0000027 ... P41805 N/A
    851120 8p4v:CL (3.16) BS03 OHX N/A GO:0000027 ... P41805 N/A
    851121 8p4v:CL (3.16) BS04 OHX N/A GO:0000027 ... P41805 N/A
    851122 8p4v:CM (3.16) BS01 rna N/A GO:0000027 ... P0C0W9 N/A
    851123 8p4v:CM (3.16) BS02 rna N/A GO:0000027 ... P0C0W9 N/A
    851124 8p4v:CN (3.16) BS01 rna N/A GO:0002181 ... Q12690 N/A
    851125 8p4v:CN (3.16) BS02 rna N/A GO:0002181 ... Q12690 N/A
    851126 8p4v:CO (3.16) BS01 rna N/A GO:0000027 ... P36105 N/A
    851127 8p4v:CO (3.16) BS02 MG N/A GO:0000027 ... P36105 N/A
    851128 8p4v:CP (3.16) BS01 rna N/A GO:0002181 ... P05748 N/A
    851129 8p4v:CP (3.16) BS02 rna N/A GO:0002181 ... P05748 N/A
    851130 8p4v:CP (3.16) BS03 OHX N/A GO:0002181 ... P05748 N/A
    851131 8p4v:CP (3.16) BS04 MG N/A GO:0002181 ... P05748 N/A
    851132 8p4v:CQ (3.16) BS01 rna N/A GO:0000470 ... P26784 N/A
    851133 8p4v:CQ (3.16) BS02 MG N/A GO:0000470 ... P26784 N/A
    851134 8p4v:CR (3.16) BS01 rna N/A GO:0000448 ... P05740 N/A
    851135 8p4v:CR (3.16) BS02 rna N/A GO:0000448 ... P05740 N/A
    851136 8p4v:CS (3.16) BS01 rna N/A GO:0002181 ... P0CX49 N/A
    851137 8p4v:CT (3.16) BS01 rna N/A GO:0002181 ... P0CX82 N/A
    851138 8p4v:CT (3.16) BS02 rna N/A GO:0002181 ... P0CX82 N/A
    851139 8p4v:CU (3.16) BS01 rna N/A GO:0002181 ... P0CX23 N/A
    851140 8p4v:CU (3.16) BS02 rna N/A GO:0002181 ... P0CX23 N/A
    851141 8p4v:CV (3.16) BS01 rna N/A GO:0002181 ... Q02753 N/A
    851142 8p4v:CV (3.16) BS02 rna N/A GO:0002181 ... Q02753 N/A
    851143 8p4v:CV (3.16) BS03 MG N/A GO:0002181 ... Q02753 N/A
    851144 8p4v:CV (3.16) BS04 OHX N/A GO:0002181 ... Q02753 N/A
    851145 8p4v:CW (3.16) BS01 rna N/A GO:0002181 ... P05749 N/A
    851146 8p4v:CX (3.16) BS01 rna N/A GO:0002181 ... P0CX41 N/A
    851147 8p4v:CX (3.16) BS02 rna N/A GO:0002181 ... P0CX41 N/A
    851148 8p4v:CY (3.16) BS01 rna N/A GO:0002181 ... P04449 N/A
    851149 8p4v:CY (3.16) BS02 rna N/A GO:0002181 ... P04449 N/A
    851150 8p4v:CZ (3.16) BS01 rna N/A GO:0000027 ... P04456 N/A
    851151 8p4v:CZ (3.16) BS02 rna N/A GO:0000027 ... P04456 N/A
    851152 8p4v:D (3.16) BS01 rna N/A GO:0000054 ... P25443 N/A
    851153 8p4v:DA (3.16) BS01 rna N/A GO:0002181 ... P05743 N/A
    851154 8p4v:DA (3.16) BS02 rna N/A GO:0002181 ... P05743 N/A
    851155 8p4v:DB (3.16) BS01 rna N/A GO:0002181 ... P0C2H6 N/A
    851156 8p4v:DC (3.16) BS01 rna N/A GO:0002181 ... P02406 N/A
    851157 8p4v:DD (3.16) BS01 rna N/A GO:0002181 ... P05747 N/A
    851158 8p4v:DD (3.16) BS02 OHX N/A GO:0002181 ... P05747 N/A
    851159 8p4v:DE (3.16) BS01 rna N/A GO:0002181 ... P14120 N/A
    851160 8p4v:DF (3.16) BS01 rna N/A GO:0002181 ... P0C2H8 N/A
    851161 8p4v:DG (3.16) BS01 rna N/A GO:0002181 ... P38061 N/A
    851162 8p4v:DH (3.16) BS01 rna N/A GO:0000027 ... P05744 N/A
    851163 8p4v:DH (3.16) BS02 OHX N/A GO:0000027 ... P05744 N/A
    851164 8p4v:DH (3.16) BS03 MG N/A GO:0000027 ... P05744 N/A
    851165 8p4v:DI (3.16) BS01 rna N/A GO:0002181 ... P87262 N/A
    851166 8p4v:DJ (3.16) BS01 rna N/A GO:0000463 ... P0CX84 N/A
    851167 8p4v:DJ (3.16) BS02 rna N/A GO:0000463 ... P0CX84 N/A
    851168 8p4v:DK (3.16) BS01 rna N/A GO:0002181 ... P05745 N/A
    851169 8p4v:DL (3.16) BS01 rna N/A GO:0000448 ... P49166 N/A
    851170 8p4v:DL (3.16) BS02 rna N/A GO:0000448 ... P49166 N/A
    851171 8p4v:DL (3.16) BS03 OHX N/A GO:0000448 ... P49166 N/A
    851172 8p4v:DL (3.16) BS04 OHX N/A GO:0000448 ... P49166 N/A
    851173 8p4v:DL (3.16) BS05 ZN N/A GO:0000448 ... P49166 N/A
    851174 8p4v:DM (3.16) BS01 rna N/A GO:0002181 ... P49167 N/A
    851175 8p4v:DN (3.16) BS01 rna N/A GO:0002181 ... P04650 N/A
    851176 8p4v:DN (3.16) BS02 rna N/A GO:0002181 ... P04650 N/A
    851177 8p4v:DO (3.16) BS01 rna N/A GO:0000027 ... P0CH08 N/A
    851178 8p4v:DO (3.16) BS02 ZN N/A GO:0000027 ... P0CH08 N/A
    851179 8p4v:DQ (3.16) BS01 rna N/A GO:0002181 ... P0CX27 N/A
    851180 8p4v:DQ (3.16) BS02 X1K N/A GO:0002181 ... P0CX27 N/A
    851181 8p4v:DQ (3.16) BS03 ZN N/A GO:0002181 ... P0CX27 N/A
    851182 8p4v:DQ (3.16) BS04 OHX N/A GO:0002181 ... P0CX27 N/A
    851183 8p4v:DR (3.16) BS01 rna N/A GO:0002181 ... P0CX25 N/A
    851184 8p4v:DR (3.16) BS02 rna N/A GO:0002181 ... P0CX25 N/A
    851185 8p4v:DR (3.16) BS03 ZN N/A GO:0002181 ... P0CX25 N/A
    851186 8p4v:E (3.16) BS01 rna N/A GO:0000054 ... P05750 N/A
    851187 8p4v:F (3.16) BS01 rna N/A GO:0002181 ... P0CX35 N/A
    851188 8p4v:G (3.16) BS01 rna N/A GO:0000028 ... P26783 N/A
    851189 8p4v:H (3.16) BS01 rna N/A GO:0000462 ... P0CX37 N/A
    851190 8p4v:I (3.16) BS01 rna N/A GO:0002181 ... P26786 N/A
    851191 8p4v:J (3.16) BS01 rna N/A GO:0000462 ... P0CX39 N/A
    851192 8p4v:J (3.16) BS02 rna N/A GO:0000462 ... P0CX39 N/A
    851193 8p4v:J (3.16) BS03 OHX N/A GO:0000462 ... P0CX39 N/A
    851194 8p4v:K (3.16) BS01 rna N/A GO:0000462 ... O13516 N/A
    851195 8p4v:L (3.16) BS01 rna N/A GO:0000054 ... Q08745 N/A
    851196 8p4v:M (3.16) BS01 rna N/A GO:0000028 ... P0CX47 N/A
    851197 8p4v:N (3.16) BS01 rna N/A GO:0000028 ... P48589 N/A
    851198 8p4v:O (3.16) BS01 rna N/A GO:0000462 ... P05756 N/A
    851199 8p4v:O (3.16) BS02 rna N/A GO:0000462 ... P05756 N/A
    851200 8p4v:O (3.16) BS03 OHX N/A GO:0000462 ... P05756 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).