SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    851001 8omb:A (1.35) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00918 N/A
    851002 8omb:A (1.35) BS02 VRN 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00918 N/A
    851003 8omc:A (1.5) BS01 HEM 1.11.1.-
    4.98.1.1    		 GO:0004325 ... A0A7U9DT46 38020392
    851004 8omc:B (1.5) BS01 HEM 1.11.1.-
    4.98.1.1    		 GO:0004325 ... A0A7U9DT46 38020392
    851005 8omd:A (2.0) BS01 VTJ 2.7.1.3 GO:0004454 ... P97328 37712434
    851006 8omd:A (2.0) BS02 VTJ 2.7.1.3 GO:0004454 ... P97328 37712434
    851007 8omd:B (2.0) BS01 VTJ 2.7.1.3 GO:0004454 ... P97328 37712434
    851008 8omd:B (2.0) BS02 VTJ 2.7.1.3 GO:0004454 ... P97328 37712434
    851009 8omd:C (2.0) BS01 VTJ 2.7.1.3 GO:0004454 ... P97328 37712434
    851010 8omd:C (2.0) BS02 VTJ 2.7.1.3 GO:0004454 ... P97328 37712434
    851011 8omd:D (2.0) BS01 VTJ 2.7.1.3 GO:0004454 ... P97328 37712434
    851012 8ome:A (2.0) BS01 VTJ 2.7.1.3 GO:0004454 ... P50053 37712434
    851013 8ome:A (2.0) BS02 VTJ 2.7.1.3 GO:0004454 ... P50053 37712434
    851014 8ome:B (2.0) BS01 VTJ 2.7.1.3 GO:0004454 ... P50053 37712434
    851015 8ome:B (2.0) BS02 VTJ 2.7.1.3 GO:0004454 ... P50053 37712434
    851016 8ome:C (2.0) BS01 VTJ 2.7.1.3 GO:0004454 ... P50053 37712434
    851017 8ome:C (2.0) BS02 VTJ 2.7.1.3 GO:0004454 ... P50053 37712434
    851018 8ome:D (2.0) BS01 VTJ 2.7.1.3 GO:0004454 ... P50053 37712434
    851019 8ome:D (2.0) BS02 VTJ 2.7.1.3 GO:0004454 ... P50053 37712434
    851020 8omf:A (2.14) BS01 VTJ 2.7.1.3 GO:0004454 ... P50053 37712434
    851021 8omf:B (2.14) BS01 VTJ 2.7.1.3 GO:0004454 ... P50053 37712434
    851022 8omh:A (1.45) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00918 N/A
    851023 8omh:A (1.45) BS02 VS9 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00918 N/A
    851024 8omi:A (1.77) BS01 ATP 2.7.-.- GO:0000828 ... C4M387 37843983
    851025 8omj:A (1.978) BS01 VTM N/A GO:0004454 ... P50053 39179180
    851026 8omj:B (1.978) BS01 VTM N/A GO:0004454 ... P50053 39179180
    851027 8omk:A (2.48) BS01 F1X 2.7.1.3 GO:0004454 ... P50053 39179180
    851028 8omk:A (2.48) BS02 ADP 2.7.1.3 GO:0004454 ... P50053 39179180
    851029 8omk:B (2.48) BS01 ADP 2.7.1.3 GO:0004454 ... P50053 39179180
    851030 8omm:A (2.15) BS01 HT9 4.99.1.9 GO:0004325 ... A0A3T2BSC5 37743577
    851031 8omm:A (2.15) BS02 FE2 4.99.1.9 GO:0004325 ... A0A3T2BSC5 37743577
    851032 8omn:A (1.4) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00918 N/A
    851033 8omn:A (1.4) BS02 A1H69 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00918 N/A
    851034 8omo:A (3.43) BS01 ATP ? GO:0000287 ... P43246 N/A
    851035 8omo:A (3.43) BS02 MG ? GO:0000287 ... P43246 N/A
    851036 8omo:A (3.43) BS03 ATP ? GO:0000287 ... P43246 N/A
    851037 8omo:B (3.43) BS01 ATP ? GO:0003690 ... P20585 N/A
    851038 8omo:B (3.43) BS02 ATP ? GO:0003690 ... P20585 N/A
    851039 8omo:B (3.43) BS03 MG ? GO:0003690 ... P20585 N/A
    851040 8omp:A (1.41) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00918 N/A
    851041 8omp:A (1.41) BS02 VQW 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00918 N/A
    851042 8omq:A (3.11) BS01 ATP ? GO:0000287 ... P43246 N/A
    851043 8omq:A (3.11) BS02 ATP ? GO:0000287 ... P43246 N/A
    851044 8omq:A (3.11) BS03 MG ? GO:0000287 ... P43246 N/A
    851045 8omq:B (3.11) BS01 ATP ? GO:0003690 ... P20585 N/A
    851046 8omq:B (3.11) BS02 MG ? GO:0003690 ... P20585 N/A
    851047 8omq:B (3.11) BS03 ATP ? GO:0003690 ... P20585 N/A
    851048 8omr:A (3.3) BS01 rna 2.4.2.64 GO:0002099 ... Q9BXR0 38181786
    851049 8omr:A (3.3) BS02 ZN 2.4.2.64 GO:0002099 ... Q9BXR0 38181786
    851050 8omr:A (3.3) BS03 9DG 2.4.2.64 GO:0002099 ... Q9BXR0 38181786
    851051 8omr:B (3.3) BS01 rna ? GO:0002099 ... Q9H974 38181786
    851052 8omr:B (3.3) BS02 ZN ? GO:0002099 ... Q9H974 38181786
    851053 8oms:AAA (1.1) BS01 VTU 3.2.1.17 GO:0003796 ... P00698 37195003
    851054 8omt:AAA (1.097) BS01 VTU 3.2.1.17 GO:0003796 ... P00698 37195003
    851055 8omt:AAA (1.097) BS02 VTZ 3.2.1.17 GO:0003796 ... P00698 37195003
    851056 8omx:X (1.5) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    851057 8omx:X (1.5) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    851058 8omx:X (1.5) BS03 NFS 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    851059 8omx:X (1.5) BS04 FE2 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    851060 8omy:X (1.37) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    851061 8omy:X (1.37) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    851062 8omy:X (1.37) BS03 FE2 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    851063 8omy:X (1.37) BS04 FE 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    851064 8omy:X (1.37) BS05 FE 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    851065 8omy:X (1.37) BS06 FE 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    851066 8omz:A (3.5) BS01 DMU ? GO:0005886 ... P0AGM7 39209842
    851067 8omz:A (3.5) BS02 DMU ? GO:0005886 ... P0AGM7 39209842
    851068 8omz:A (3.5) BS03 DMU ? GO:0005886 ... P0AGM7 39209842
    851069 8omz:C (3.5) BS01 DMU ? GO:0005886 ... P0AGM7 39209842
    851070 8omz:C (3.5) BS02 DMU ? GO:0005886 ... P0AGM7 39209842
    851071 8on0:X (1.29) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    851072 8on0:X (1.29) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    851073 8on0:X (1.29) BS03 FE2 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    851074 8on0:X (1.29) BS04 FE 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    851075 8on0:X (1.29) BS05 FE 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    851076 8on0:X (1.29) BS06 FE 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    851077 8on1:X (1.37) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    851078 8on1:X (1.37) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    851079 8on1:X (1.37) BS03 FE 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    851080 8on1:X (1.37) BS04 FE 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    851081 8on1:X (1.37) BS05 FE 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    851082 8on1:X (1.37) BS06 FE2 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    851083 8on2:X (1.58) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    851084 8on2:X (1.58) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    851085 8on2:X (1.58) BS03 FE 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    851086 8on2:X (1.58) BS04 FE 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    851087 8on2:X (1.58) BS05 FE 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    851088 8on2:X (1.58) BS06 FE 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    851089 8on3:X (1.74) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    851090 8on3:X (1.74) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    851091 8on3:X (1.74) BS03 VV2 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    851092 8on3:X (1.74) BS04 FE2 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    851093 8on7:A (2.5) BS01 peptide N/A GO:0005272 ... A0AAN0NP85 38337033
    851094 8on7:A (2.5) BS02 peptide N/A GO:0005272 ... A0AAN0NP85 38337033
    851095 8on7:B (2.5) BS01 peptide N/A GO:0005272 ... A0AAN0NP85 38337033
    851096 8on7:B (2.5) BS02 peptide N/A GO:0005272 ... A0AAN0NP85 38337033
    851097 8on7:C (2.5) BS01 peptide N/A GO:0005272 ... A0AAN0NP85 38337033
    851098 8on9:A (2.4) BS01 peptide N/A GO:0005272 ... A0AAN0NP85 38337033
    851099 8on9:B (2.4) BS01 peptide N/A GO:0005272 ... A0AAN0NP85 38337033
    851100 8on9:B (2.4) BS02 peptide N/A GO:0005272 ... A0AAN0NP85 38337033
    851101 8on9:C (2.4) BS01 peptide N/A GO:0005272 ... A0AAN0NP85 38337033
    851102 8ona:A (3.0) BS01 peptide N/A GO:0005272 ... A0AAN0NP85 38337033
    851103 8ona:B (3.0) BS01 peptide N/A GO:0005272 ... A0AAN0NP85 38337033
    851104 8ona:B (3.0) BS02 peptide N/A GO:0005272 ... A0AAN0NP85 38337033
    851105 8ona:C (3.0) BS01 peptide N/A GO:0005272 ... A0AAN0NP85 38337033
    851106 8one:A (2.3) BS01 AKG 1.14.11.4
    2.4.1.50
    2.4.1.66    		 GO:0005506 ... O60568 37446392
    851107 8one:A (2.3) BS02 FE2 1.14.11.4
    2.4.1.50
    2.4.1.66    		 GO:0005506 ... O60568 37446392
    851108 8one:A (2.3) BS03 FE2 1.14.11.4
    2.4.1.50
    2.4.1.66    		 GO:0005506 ... O60568 37446392
    851109 8one:A (2.3) BS04 MN 1.14.11.4
    2.4.1.50
    2.4.1.66    		 GO:0005506 ... O60568 37446392
    851110 8one:A (2.3) BS05 UPG 1.14.11.4
    2.4.1.50
    2.4.1.66    		 GO:0005506 ... O60568 37446392
    851111 8onh:A (2.59) BS01 BMA ? N/A B3GVS7 37656766
    851112 8onh:A (2.59) BS02 MAN ? N/A B3GVS7 37656766
    851113 8onh:A (2.59) BS03 GLC ? N/A B3GVS7 37656766
    851114 8onh:B (2.59) BS01 BMA ? N/A B3GVS7 37656766
    851115 8onh:B (2.59) BS02 MAN ? N/A B3GVS7 37656766
    851116 8onh:B (2.59) BS03 MAN ? N/A B3GVS7 37656766
    851117 8onh:B (2.59) BS04 GLC ? N/A B3GVS7 37656766
    851118 8onh:C (2.59) BS01 BMA ? N/A B3GVS7 37656766
    851119 8onh:C (2.59) BS02 GLC ? N/A B3GVS7 37656766
    851120 8onh:D (2.59) BS01 GLC ? N/A B3GVS7 37656766
    851121 8onh:E (2.59) BS01 GLC ? N/A B3GVS7 37656766
    851122 8onh:F (2.59) BS01 GLC ? N/A B3GVS7 37656766
    851123 8onh:G (2.59) BS01 BMA ? N/A B3GVS7 37656766
    851124 8onh:G (2.59) BS02 MAN ? N/A B3GVS7 37656766
    851125 8onh:G (2.59) BS03 MAN ? N/A B3GVS7 37656766
    851126 8onh:H (2.59) BS01 GLC ? N/A B3GVS7 37656766
    851127 8onh:I (2.59) BS01 BMA ? N/A B3GVS7 37656766
    851128 8onh:I (2.59) BS02 GLC ? N/A B3GVS7 37656766
    851129 8onh:J (2.59) BS01 BMA ? N/A B3GVS7 37656766
    851130 8onh:J (2.59) BS02 MAN ? N/A B3GVS7 37656766
    851131 8onh:J (2.59) BS03 GLC ? N/A B3GVS7 37656766
    851132 8onh:K (2.59) BS01 BMA ? N/A B3GVS7 37656766
    851133 8onh:K (2.59) BS02 GLC ? N/A B3GVS7 37656766
    851134 8onh:L (2.59) BS01 BMA ? N/A B3GVS7 37656766
    851135 8onh:L (2.59) BS02 GLC ? N/A B3GVS7 37656766
    851136 8onh:M (2.59) BS01 GLC ? N/A B3GVS7 37656766
    851137 8onh:N (2.59) BS01 BMA ? N/A B3GVS7 37656766
    851138 8onh:N (2.59) BS02 MAN ? N/A B3GVS7 37656766
    851139 8onh:N (2.59) BS03 GLC ? N/A B3GVS7 37656766
    851140 8onh:O (2.59) BS01 GLC ? N/A B3GVS7 37656766
    851141 8onh:P (2.59) BS01 GLC ? N/A B3GVS7 37656766
    851142 8onh:Q (2.59) BS01 GLC ? N/A B3GVS7 37656766
    851143 8onh:R (2.59) BS01 GLC ? N/A B3GVS7 37656766
    851144 8oni:C (2.3) BS01 peptide N/A N/A N/A 40583959
    851145 8oni:D (2.3) BS01 peptide N/A N/A N/A 40583959
    851146 8oni:H (2.3) BS01 peptide N/A N/A N/A 40583959
    851147 8oni:L (2.3) BS01 peptide N/A N/A N/A 40583959
    851148 8onj:A (1.8) BS01 PLP ? GO:0003824 ... D5EHC5 37548495
    851149 8onj:B (1.8) BS01 PLP ? GO:0003824 ... D5EHC5 37548495
    851150 8onk:C (3.403) BS01 peptide N/A N/A N/A 40583959
    851151 8onk:E (3.403) BS01 peptide N/A N/A N/A 40583959
    851152 8onk:F (3.403) BS01 peptide N/A N/A N/A 40583959
    851153 8onk:G (3.403) BS01 peptide N/A N/A N/A 40583959
    851154 8onk:H (3.403) BS01 peptide N/A N/A N/A 40583959
    851155 8onk:J (3.403) BS01 peptide N/A N/A N/A 40583959
    851156 8onk:K (3.403) BS01 peptide N/A N/A N/A 40583959
    851157 8onk:L (3.403) BS01 peptide N/A N/A N/A 40583959
    851158 8onl:A (1.9) BS01 PLP ? GO:0003824 ... D5EHC5 37548495
    851159 8onl:B (1.9) BS01 PLP ? GO:0003824 ... D5EHC5 37548495
    851160 8onm:A (1.85) BS01 PMP ? GO:0003824 ... D5EHC5 N/A
    851161 8onm:B (1.85) BS01 PW0 ? GO:0003824 ... D5EHC5 N/A
    851162 8onm:B (1.85) BS02 PMP ? GO:0003824 ... D5EHC5 N/A
    851163 8onn:A (2.1) BS01 OCF ? GO:0003824 ... D5EHC5 37548495
    851164 8onn:B (2.1) BS01 OCF ? GO:0003824 ... D5EHC5 37548495
    851165 8onn:C (2.1) BS01 OCF ? GO:0003824 ... D5EHC5 37548495
    851166 8onn:D (2.1) BS01 OCF ? GO:0003824 ... D5EHC5 37548495
    851167 8onu:A (-1.00) BS01 peptide ? GO:0001530 ... V5VEZ9 37298811
    851168 8onv:A (1.01) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37258666
    851169 8onv:A (1.01) BS02 VU6 3.6.5.2 GO:0003924 ... P01116 37258666
    851170 8onx:A (1.3) BS01 MN 3.4.11.18 GO:0006508 ... G0SEA9 38267453
    851171 8onx:A (1.3) BS02 MN 3.4.11.18 GO:0006508 ... G0SEA9 38267453
    851172 8ony:A (2.92) BS01 rna 3.4.11.18 GO:0003723 ... P50579 38267453
    851173 8ony:A (2.92) BS02 CO 3.4.11.18 GO:0003723 ... P50579 38267453
    851174 8ony:A (2.92) BS03 CO 3.4.11.18 GO:0003723 ... P50579 38267453
    851175 8ony:LR (2.92) BS01 rna ? GO:0002181 ... P84098 38267453
    851176 8ony:LX (2.92) BS01 rna ? GO:0002181 ... P62750 38267453
    851177 8ony:LX (2.92) BS02 rna ? GO:0002181 ... P62750 38267453
    851178 8ony:LY (2.92) BS01 rna ? GO:0002181 ... P61254 38267453
    851179 8ony:LY (2.92) BS02 rna ? GO:0002181 ... P61254 38267453
    851180 8ony:Lh (2.92) BS01 rna ? GO:0000463 ... P42766 38267453
    851181 8ony:Lk (2.92) BS01 rna ? GO:0002181 ... P63173 38267453
    851182 8onz:A (2.94) BS01 rna 3.4.11.18 GO:0004177 ... G0SEA9 38267453
    851183 8onz:LR (2.94) BS01 rna ? GO:0003735 ... G0S9T3 38267453
    851184 8onz:LX (2.94) BS01 rna ? GO:0003735 ... G0S507 38267453
    851185 8onz:LX (2.94) BS02 rna ? GO:0003735 ... G0S507 38267453
    851186 8onz:LY (2.94) BS01 rna ? GO:0003723 ... G0RYN9 38267453
    851187 8onz:LY (2.94) BS02 rna ? GO:0003723 ... G0RYN9 38267453
    851188 8onz:Lh (2.94) BS01 rna 2.4.99.18 GO:0003735 ... G0S0D7 38267453
    851189 8onz:Lk (2.94) BS01 rna ? GO:0003735 ... G0SG89 38267453
    851190 8oo0:A (3.1) BS01 rna ? GO:0006417 ... G0S9U0 38267453
    851191 8oo0:B (3.1) BS01 rna ? GO:0003676 ... G0S428 38267453
    851192 8oo0:C (3.1) BS01 rna 3.6.4.10 GO:0005524 ... G0SCU5 38267453
    851193 8oo0:D (3.1) BS01 rna 3.4.11.18 GO:0006508 ... G0SEA9 38267453
    851194 8oo0:LA (3.1) BS01 rna ? GO:0002181 ... G0S4P8 38267453
    851195 8oo0:LB (3.1) BS01 rna ? GO:0003723 ... G0RXW1 38267453
    851196 8oo0:LC (3.1) BS01 rna ? GO:0003735 ... G0SFC3 38267453
    851197 8oo0:LC (3.1) BS02 rna ? GO:0003735 ... G0SFC3 38267453
    851198 8oo0:LD (3.1) BS01 rna ? GO:0000027 ... G0SEG2 38267453
    851199 8oo0:LD (3.1) BS02 rna ? GO:0000027 ... G0SEG2 38267453
    851200 8oo0:LE (3.1) BS01 rna ? GO:0000027 ... G0S0D6 38267453
    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).