SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    851801 8p60:RGG (14.3) BS01 rna ? GO:0006417 ... S7XVG3 37709902
    851802 8p60:RH0 (14.3) BS01 rna ? GO:0003735 ... S7XV29 37709902
    851803 8p60:RI0 (14.3) BS01 rna ? GO:0003735 ... S7XGW2 37709902
    851804 8p60:RJ0 (14.3) BS01 rna ? GO:0003723 ... S7W8E3 37709902
    851805 8p60:RK0 (14.3) BS01 rna ? GO:0003723 ... S7XU48 37709902
    851806 8p60:RL0 (14.3) BS01 rna ? GO:0003735 ... S7W8R0 37709902
    851807 8p60:RM0 (14.3) BS01 rna ? GO:0005840 ... S7W7D2 37709902
    851808 8p60:RN0 (14.3) BS01 rna ? GO:0000462 ... S7XVZ9 37709902
    851809 8p60:RO0 (14.3) BS01 rna ? GO:0003735 ... S7W6I0 37709902
    851810 8p60:RP0 (14.3) BS01 rna ? GO:0000028 ... S7XKY9 37709902
    851811 8p60:RQ0 (14.3) BS01 rna ? GO:0000462 ... S7WDU9 37709902
    851812 8p60:RR0 (14.3) BS01 rna N/A GO:0003735 ... N/A 37709902
    851813 8p60:RS0 (14.3) BS01 rna ? GO:0003676 ... S7XJA1 37709902
    851814 8p60:RT0 (14.3) BS01 rna ? GO:0000028 ... S7W7P5 37709902
    851815 8p60:RU0 (14.3) BS01 rna ? GO:0005840 ... S7W986 37709902
    851816 8p60:RW0 (14.3) BS01 rna ? GO:0003735 ... S7XK92 37709902
    851817 8p60:RX0 (14.3) BS01 rna N/A GO:0003735 ... N/A 37709902
    851818 8p60:RY0 (14.3) BS01 rna ? GO:0003735 ... S7W8J5 37709902
    851819 8p60:SA0 (14.3) BS01 rna ? GO:0003735 ... S7W8R1 37709902
    851820 8p60:SAA (14.3) BS01 rna ? GO:0003729 ... S7W9M7 37709902
    851821 8p60:SAA (14.3) BS02 ZN ? GO:0003729 ... S7W9M7 37709902
    851822 8p60:SB0 (14.3) BS01 rna N/A GO:0003735 ... N/A 37709902
    851823 8p60:SBB (14.3) BS01 rna N/A GO:0003735 ... N/A 37709902
    851824 8p60:SBB (14.3) BS02 ZN N/A GO:0003735 ... N/A 37709902
    851825 8p60:SC0 (14.3) BS01 rna ? GO:0003723 ... S7W7R5 37709902
    851826 8p60:SD0 (14.3) BS01 rna ? GO:0000054 ... S7WAW0 37709902
    851827 8p60:SDD (14.3) BS01 rna ? GO:0002181 ... S7XJB1 37709902
    851828 8p60:SDD (14.3) BS02 ZN ? GO:0002181 ... S7XJB1 37709902
    851829 8p60:SE0 (14.3) BS01 rna ? GO:0003723 ... S7XG51 37709902
    851830 8p60:SEE (14.3) BS01 rna N/A GO:0003735 ... N/A 37709902
    851831 8p60:SF0 (14.3) BS01 rna ? GO:0000054 ... S7W4M9 37709902
    851832 8p60:SFF (14.3) BS01 rna ? GO:0003735 ... S7W9X5 37709902
    851833 8p60:SFF (14.3) BS02 rna ? GO:0003735 ... S7W9X5 37709902
    851834 8p60:SG0 (14.3) BS01 rna N/A GO:0003735 ... N/A 37709902
    851835 8p60:SGG (14.3) BS01 rna ? GO:0006417 ... S7XVG3 37709902
    851836 8p60:SH0 (14.3) BS01 rna ? GO:0003735 ... S7XV29 37709902
    851837 8p60:SI0 (14.3) BS01 rna ? GO:0003735 ... S7XGW2 37709902
    851838 8p60:SJ0 (14.3) BS01 rna ? GO:0003723 ... S7W8E3 37709902
    851839 8p60:SK0 (14.3) BS01 rna ? GO:0003723 ... S7XU48 37709902
    851840 8p60:SL0 (14.3) BS01 rna ? GO:0003735 ... S7W8R0 37709902
    851841 8p60:SM0 (14.3) BS01 rna ? GO:0005840 ... S7W7D2 37709902
    851842 8p60:SN0 (14.3) BS01 rna ? GO:0000462 ... S7XVZ9 37709902
    851843 8p60:SO0 (14.3) BS01 rna ? GO:0003735 ... S7W6I0 37709902
    851844 8p60:SP0 (14.3) BS01 rna ? GO:0000028 ... S7XKY9 37709902
    851845 8p60:SQ0 (14.3) BS01 rna ? GO:0000462 ... S7WDU9 37709902
    851846 8p60:SR0 (14.3) BS01 rna N/A GO:0003735 ... N/A 37709902
    851847 8p60:SS0 (14.3) BS01 rna ? GO:0003676 ... S7XJA1 37709902
    851848 8p60:ST0 (14.3) BS01 rna ? GO:0000028 ... S7W7P5 37709902
    851849 8p60:SU0 (14.3) BS01 rna ? GO:0005840 ... S7W986 37709902
    851850 8p60:SW0 (14.3) BS01 rna ? GO:0003735 ... S7XK92 37709902
    851851 8p60:SX0 (14.3) BS01 rna N/A GO:0003735 ... N/A 37709902
    851852 8p60:SY0 (14.3) BS01 rna ? GO:0003735 ... S7W8J5 37709902
    851853 8p62:2 (3.9) BS01 ATP 3.6.4.12 GO:0000727 ... P29469 38760633
    851854 8p62:2 (3.9) BS02 ZN 3.6.4.12 GO:0000727 ... P29469 38760633
    851855 8p62:2 (3.9) BS03 ATP 3.6.4.12 GO:0000727 ... P29469 38760633
    851856 8p62:3 (3.9) BS01 dna 3.6.4.12 GO:0000727 ... P24279 38760633
    851857 8p62:3 (3.9) BS02 ATP 3.6.4.12 GO:0000727 ... P24279 38760633
    851858 8p62:3 (3.9) BS03 ATP 3.6.4.12 GO:0000727 ... P24279 38760633
    851859 8p62:4 (3.9) BS01 ADP 3.6.4.12 GO:0000727 ... P30665 38760633
    851860 8p62:4 (3.9) BS02 ZN 3.6.4.12 GO:0000727 ... P30665 38760633
    851861 8p62:4 (3.9) BS03 ADP 3.6.4.12 GO:0000727 ... P30665 38760633
    851862 8p62:5 (3.9) BS01 dna 3.6.4.12 GO:0000727 ... P29496 38760633
    851863 8p62:5 (3.9) BS02 ATP 3.6.4.12 GO:0000727 ... P29496 38760633
    851864 8p62:5 (3.9) BS03 ATP 3.6.4.12 GO:0000727 ... P29496 38760633
    851865 8p62:6 (3.9) BS01 dna 3.6.4.12 GO:0000727 ... P53091 38760633
    851866 8p62:6 (3.9) BS02 ATP 3.6.4.12 GO:0000727 ... P53091 38760633
    851867 8p62:6 (3.9) BS03 ADP 3.6.4.12 GO:0000727 ... P53091 38760633
    851868 8p62:6 (3.9) BS04 ZN 3.6.4.12 GO:0000727 ... P53091 38760633
    851869 8p62:7 (3.9) BS01 ATP 3.6.4.12 GO:0000727 ... P38132 38760633
    851870 8p62:7 (3.9) BS02 ZN 3.6.4.12 GO:0000727 ... P38132 38760633
    851871 8p62:G (3.9) BS01 ZN 2.7.7.7
    3.1.11.-
    GO:0000166 ... P21951 38760633
    851872 8p62:G (3.9) BS02 ZN 2.7.7.7
    3.1.11.-
    GO:0000166 ... P21951 38760633
    851873 8p63:2 (3.7) BS01 dna 3.6.4.12 GO:0000727 ... P29469 38760633
    851874 8p63:2 (3.7) BS02 ATP 3.6.4.12 GO:0000727 ... P29469 38760633
    851875 8p63:2 (3.7) BS03 ZN 3.6.4.12 GO:0000727 ... P29469 38760633
    851876 8p63:2 (3.7) BS04 ATP 3.6.4.12 GO:0000727 ... P29469 38760633
    851877 8p63:3 (3.7) BS01 dna 3.6.4.12 GO:0000727 ... P24279 38760633
    851878 8p63:3 (3.7) BS02 ATP 3.6.4.12 GO:0000727 ... P24279 38760633
    851879 8p63:4 (3.7) BS01 ZN 3.6.4.12 GO:0000727 ... P30665 38760633
    851880 8p63:4 (3.7) BS02 ADP 3.6.4.12 GO:0000727 ... P30665 38760633
    851881 8p63:4 (3.7) BS03 ADP 3.6.4.12 GO:0000727 ... P30665 38760633
    851882 8p63:5 (3.7) BS01 dna 3.6.4.12 GO:0000727 ... P29496 38760633
    851883 8p63:5 (3.7) BS02 ATP 3.6.4.12 GO:0000727 ... P29496 38760633
    851884 8p63:5 (3.7) BS03 ATP 3.6.4.12 GO:0000727 ... P29496 38760633
    851885 8p63:6 (3.7) BS01 dna 3.6.4.12 GO:0000727 ... P53091 38760633
    851886 8p63:6 (3.7) BS02 ATP 3.6.4.12 GO:0000727 ... P53091 38760633
    851887 8p63:6 (3.7) BS03 ADP 3.6.4.12 GO:0000727 ... P53091 38760633
    851888 8p63:6 (3.7) BS04 ZN 3.6.4.12 GO:0000727 ... P53091 38760633
    851889 8p63:7 (3.7) BS01 ZN 3.6.4.12 GO:0000727 ... P38132 38760633
    851890 8p63:7 (3.7) BS02 ATP 3.6.4.12 GO:0000727 ... P38132 38760633
    851891 8p63:G (3.7) BS01 ZN 2.7.7.7
    3.1.11.-
    GO:0000166 ... P21951 38760633
    851892 8p63:G (3.7) BS02 ZN 2.7.7.7
    3.1.11.-
    GO:0000166 ... P21951 38760633
    851893 8p64:A (3.312) BS01 X1Q ? N/A Q9NZQ7 38665826
    851894 8p64:B (3.312) BS01 X1Q ? N/A Q9NZQ7 38665826
    851895 8p65:C (3.0) BS01 HEM N/A GO:0005739 ... P00157 N/A
    851896 8p65:C (3.0) BS02 HEM N/A GO:0005739 ... P00157 N/A
    851897 8p65:D (3.0) BS01 HEC N/A GO:0009055 ... P00125 N/A
    851898 8p65:E (3.0) BS01 FES N/A GO:0008121 ... P13272 N/A
    851899 8p65:P (3.0) BS01 HEM N/A GO:0005739 ... P00157 N/A
    851900 8p65:P (3.0) BS02 HEM N/A GO:0005739 ... P00157 N/A
    851901 8p65:Q (3.0) BS01 HEC N/A GO:0009055 ... P00125 N/A
    851902 8p65:R (3.0) BS01 FES N/A GO:0008121 ... P13272 N/A
    851903 8p66:B (-1.00) BS01 ZN ? N/A A0A7M2ZW85 37827289
    851904 8p67:A (1.37) BS01 XYP 3.2.1.- GO:0004348 ... G2Q1N4 38678481
    851905 8p67:A (1.37) BS02 XYP 3.2.1.- GO:0004348 ... G2Q1N4 38678481
    851906 8p67:A (1.37) BS03 XYP 3.2.1.- GO:0004348 ... G2Q1N4 38678481
    851907 8p67:A (1.37) BS04 GCV 3.2.1.- GO:0004348 ... G2Q1N4 38678481
    851908 8p67:B (1.37) BS01 XYP 3.2.1.- GO:0004348 ... G2Q1N4 38678481
    851909 8p67:B (1.37) BS02 XYP 3.2.1.- GO:0004348 ... G2Q1N4 38678481
    851910 8p67:B (1.37) BS03 XYP 3.2.1.- GO:0004348 ... G2Q1N4 38678481
    851911 8p67:B (1.37) BS04 GCV 3.2.1.- GO:0004348 ... G2Q1N4 38678481
    851912 8p6f:A (2.0) BS01 MG ? GO:0000160 ... A0A1M5SPD1 38503809
    851913 8p6f:A (2.0) BS02 ZN ? GO:0000160 ... A0A1M5SPD1 38503809
    851914 8p6f:A (2.0) BS03 ZN ? GO:0000160 ... A0A1M5SPD1 38503809
    851915 8p6f:B (2.0) BS01 MG ? GO:0000160 ... A0A1M5SPD1 38503809
    851916 8p6f:B (2.0) BS02 ZN ? GO:0000160 ... A0A1M5SPD1 38503809
    851917 8p6f:B (2.0) BS03 ZN ? GO:0000160 ... A0A1M5SPD1 38503809
    851918 8p6i:H (2.5) BS01 peptide N/A N/A N/A 38508723
    851919 8p6i:L (2.5) BS01 peptide N/A N/A N/A 38508723
    851920 8p6i:h (2.5) BS01 peptide N/A N/A N/A 38508723
    851921 8p6i:l (2.5) BS01 peptide N/A N/A N/A 38508723
    851922 8p6j:BBB (2.324) BS01 peptide ? N/A A0A0H2UWN1 N/A
    851923 8p6j:BBB (2.324) BS02 peptide ? N/A A0A0H2UWN1 N/A
    851924 8p6j:CCC (2.324) BS01 peptide ? N/A A0A0H2UWN1 N/A
    851925 8p6j:CCC (2.324) BS02 peptide ? N/A A0A0H2UWN1 N/A
    851926 8p6j:CCC (2.324) BS03 peptide ? N/A A0A0H2UWN1 N/A
    851927 8p6j:FFF (2.324) BS01 peptide ? N/A A0A0H2UWN1 N/A
    851928 8p6j:FFF (2.324) BS02 peptide ? N/A A0A0H2UWN1 N/A
    851929 8p6o:A (1.05) BS01 MAV ? GO:0016829 ... A0A7I9C8Z1 N/A
    851930 8p6o:A (1.05) BS02 BEM ? GO:0016829 ... A0A7I9C8Z1 N/A
    851931 8p6o:A (1.05) BS03 BEM ? GO:0016829 ... A0A7I9C8Z1 N/A
    851932 8p6o:A (1.05) BS04 BEM ? GO:0016829 ... A0A7I9C8Z1 N/A
    851933 8p6p:A (3.2) BS01 rna N/A GO:0003735 ... P75560 39668257
    851934 8p6p:B (3.2) BS01 rna N/A GO:0003729 ... P41205 39668257
    851935 8p6p:B (3.2) BS02 rna N/A GO:0003729 ... P41205 39668257
    851936 8p6p:C (3.2) BS01 rna N/A GO:0003735 ... P46775 39668257
    851937 8p6p:C (3.2) BS02 rna N/A GO:0003735 ... P46775 39668257
    851938 8p6p:D (3.2) BS01 rna N/A GO:0005840 ... Q50301 39668257
    851939 8p6p:D (3.2) BS02 rna N/A GO:0005840 ... Q50301 39668257
    851940 8p6p:E (3.2) BS01 rna N/A GO:0005840 ... P75543 39668257
    851941 8p6p:F (3.2) BS01 rna N/A GO:0000049 ... P75545 39668257
    851942 8p6p:F (3.2) BS02 rna N/A GO:0000049 ... P75545 39668257
    851943 8p6p:G (3.2) BS01 rna N/A GO:0005840 ... Q50304 39668257
    851944 8p6p:H (3.2) BS01 rna N/A GO:0003723 ... P75179 39668257
    851945 8p6p:I (3.2) BS01 rna N/A GO:0000049 ... P75581 39668257
    851946 8p6p:J (3.2) BS01 rna N/A GO:0005840 ... Q50296 39668257
    851947 8p6p:K (3.2) BS01 rna N/A GO:0000049 ... P75546 39668257
    851948 8p6p:L (3.2) BS01 rna N/A GO:0000049 ... Q50297 39668257
    851949 8p6p:L (3.2) BS02 rna N/A GO:0000049 ... Q50297 39668257
    851950 8p6p:L (3.2) BS03 rna N/A GO:0000049 ... Q50297 39668257
    851951 8p6p:M (3.2) BS01 rna N/A GO:0003735 ... Q50305 39668257
    851952 8p6p:M (3.2) BS02 ZN N/A GO:0003735 ... Q50305 39668257
    851953 8p6p:N (3.2) BS01 rna N/A GO:0005737 ... P75173 39668257
    851954 8p6p:O (3.2) BS01 rna N/A GO:0003735 ... P75131 39668257
    851955 8p6p:P (3.2) BS01 rna N/A GO:0003735 ... Q50309 39668257
    851956 8p6p:Q (3.2) BS01 rna N/A GO:0003735 ... P75541 39668257
    851957 8p6p:Q (3.2) BS02 ZN N/A GO:0003735 ... P75541 39668257
    851958 8p6p:R (3.2) BS01 rna N/A GO:0000028 ... P75576 39668257
    851959 8p6p:S (3.2) BS01 rna N/A GO:0005840 ... P75237 39668257
    851960 8p6p:T (3.2) BS01 rna N/A GO:0005840 ... P57079 39668257
    851961 8p6p:x (3.2) BS01 rna N/A GO:0005840 ... P78020 39668257
    851962 8p6s:A (2.1) BS01 GDU N/A N/A Q8W1S1 N/A
    851963 8p6u:A (1.3) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 38358125
    851964 8p6v:J (1.9) BS01 I74 2.7.11.22
    2.7.11.23
    GO:0000307 ... P50613 38480681
    851965 8p6w:J (1.9) BS01 X2H 2.7.11.22
    2.7.11.23
    GO:0000307 ... P50613 38480681
    851966 8p6x:J (1.9) BS01 NS9 2.7.11.22
    2.7.11.23
    GO:0000307 ... P50613 38480681
    851967 8p6y:J (1.9) BS01 AGS 2.7.11.22
    2.7.11.23
    GO:0000307 ... P50613 38480681
    851968 8p6y:J (1.9) BS02 MG 2.7.11.22
    2.7.11.23
    GO:0000307 ... P50613 38480681
    851969 8p6z:J (2.1) BS01 X4L 2.7.11.22
    2.7.11.23
    GO:0000307 ... P50613 38480681
    851970 8p70:J (2.0) BS01 X4Q 2.7.11.22
    2.7.11.23
    GO:0000307 ... P50613 38480681
    851971 8p71:J (2.0) BS01 X4F 2.7.11.22
    2.7.11.23
    GO:0000307 ... P50613 38480681
    851972 8p72:J (1.9) BS01 X2Z 2.7.11.22
    2.7.11.23
    GO:0000307 ... P50613 38480681
    851973 8p73:J (2.0) BS01 X50 2.7.11.22
    2.7.11.23
    GO:0000307 ... P50613 38480681
    851974 8p73:J (2.0) BS02 X58 2.7.11.22
    2.7.11.23
    GO:0000307 ... P50613 38480681
    851975 8p74:J (2.2) BS01 X3Z 2.7.11.22
    2.7.11.23
    GO:0000307 ... P50613 38480681
    851976 8p75:J (2.0) BS01 X3Z 2.7.11.22
    2.7.11.23
    GO:0000307 ... P50613 38480681
    851977 8p76:J (2.0) BS01 X1W 2.7.11.22
    2.7.11.23
    GO:0000307 ... P50613 38480681
    851978 8p77:J (1.8) BS01 I73 2.7.11.22
    2.7.11.23
    GO:0000307 ... P50613 38480681
    851979 8p78:J (1.9) BS01 1QK 2.7.11.22
    2.7.11.23
    GO:0000307 ... P50613 38480681
    851980 8p7b:A (2.42) BS01 rna 2.1.1.- GO:0005515 ... Q8TCB7 38918637
    851981 8p7b:A (2.42) BS02 SAH 2.1.1.- GO:0005515 ... Q8TCB7 38918637
    851982 8p7b:B (2.42) BS01 rna 6.1.1.11 GO:0000049 ... P49591 38918637
    851983 8p7b:B (2.42) BS02 rna 6.1.1.11 GO:0000049 ... P49591 38918637
    851984 8p7b:D (2.42) BS01 rna 6.1.1.11 GO:0000049 ... P49591 38918637
    851985 8p7b:D (2.42) BS02 rna 6.1.1.11 GO:0000049 ... P49591 38918637
    851986 8p7c:A (3.7) BS01 rna 2.1.1.- GO:0005515 ... Q8TCB7 38918637
    851987 8p7c:A (3.7) BS02 SAH 2.1.1.- GO:0005515 ... Q8TCB7 38918637
    851988 8p7c:B (3.7) BS01 rna 6.1.1.11 GO:0000049 ... P49591 38918637
    851989 8p7c:C (3.7) BS01 rna 2.1.1.- GO:0005515 ... Q8TCB7 38918637
    851990 8p7c:C (3.7) BS02 SAH 2.1.1.- GO:0005515 ... Q8TCB7 38918637
    851991 8p7c:D (3.7) BS01 rna 6.1.1.11 GO:0000049 ... P49591 38918637
    851992 8p7d:A (4.2) BS01 rna 2.1.1.- GO:0005515 ... Q8TCB7 38918637
    851993 8p7d:A (4.2) BS02 SAH 2.1.1.- GO:0005515 ... Q8TCB7 38918637
    851994 8p7d:B (4.2) BS01 rna 6.1.1.11 GO:0000049 ... P49591 38918637
    851995 8p7d:D (4.2) BS01 rna 6.1.1.11 GO:0000049 ... P49591 38918637
    851996 8p7e:A (1.5) BS01 ABN N/A GO:0016787 ... N/A 38868102
    851997 8p7e:A (1.5) BS02 ABN N/A GO:0016787 ... N/A 38868102
    851998 8p7e:A (1.5) BS03 ABN N/A GO:0016787 ... N/A 38868102
    851999 8p7e:A (1.5) BS04 ABN N/A GO:0016787 ... N/A 38868102
    852000 8p7e:B (1.5) BS01 ABN N/A GO:0016787 ... N/A 38868102

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).