SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    852001 8p7e:B (1.5) BS02 ABN N/A GO:0016787 ... N/A 38868102
    852002 8p7e:B (1.5) BS03 ABN N/A GO:0016787 ... N/A 38868102
    852003 8p7e:B (1.5) BS04 ABN N/A GO:0016787 ... N/A 38868102
    852004 8p7f:A (2.0) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    852005 8p7h:A (1.774) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    852006 8p7h:A (1.774) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    852007 8p7h:A (1.774) BS03 X3B 3.1.8.1 GO:0004063 ... P0A434 37860961
    852008 8p7i:A (1.7) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    852009 8p7i:A (1.7) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    852010 8p7i:A (1.7) BS03 X3E 3.1.8.1 GO:0004063 ... P0A434 37860961
    852011 8p7i:B (1.7) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    852012 8p7i:B (1.7) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    852013 8p7i:B (1.7) BS03 X3E 3.1.8.1 GO:0004063 ... P0A434 37860961
    852014 8p7j:A (2.4) BS01 X3K 2.7.12.2 GO:0004672 ... P52564 39716901
    852015 8p7j:B (2.4) BS01 X3K 2.7.12.2 GO:0004672 ... P52564 39716901
    852016 8p7k:A (1.929) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    852017 8p7k:A (1.929) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    852018 8p7k:A (1.929) BS03 E5N 3.1.8.1 GO:0004063 ... P0A434 37860961
    852019 8p7k:B (1.929) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    852020 8p7k:B (1.929) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    852021 8p7k:B (1.929) BS03 E5N 3.1.8.1 GO:0004063 ... P0A434 37860961
    852022 8p7l:J (2.1) BS01 peptide 2.7.11.22
    2.7.11.23
    GO:0000307 ... P50613 38480681
    852023 8p7l:J (2.1) BS02 WD9 2.7.11.22
    2.7.11.23
    GO:0000307 ... P50613 38480681
    852024 8p7m:A (1.85) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    852025 8p7m:A (1.85) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    852026 8p7m:A (1.85) BS03 GB 3.1.8.1 GO:0004063 ... P0A434 37860961
    852027 8p7n:A (3.2) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    852028 8p7n:A (3.2) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    852029 8p7n:B (3.2) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    852030 8p7n:B (3.2) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    852031 8p7n:C (3.2) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    852032 8p7n:C (3.2) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    852033 8p7n:D (3.2) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    852034 8p7n:D (3.2) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    852035 8p7o:A (1.7) BS01 FE 1.21.3.1 GO:0005506 ... P05326 N/A
    852036 8p7o:A (1.7) BS02 X5L 1.21.3.1 GO:0005506 ... P05326 N/A
    852037 8p7p:A (1.8) BS01 X2R 1.21.3.1 GO:0005506 ... P05326 N/A
    852038 8p7p:A (1.8) BS02 FE 1.21.3.1 GO:0005506 ... P05326 N/A
    852039 8p7q:A (1.77) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    852040 8p7q:A (1.77) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    852041 8p7q:A (1.77) BS03 E8N 3.1.8.1 GO:0004063 ... P0A434 37860961
    852042 8p7q:A (1.77) BS04 UCJ 3.1.8.1 GO:0004063 ... P0A434 37860961
    852043 8p7r:A (1.85) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    852044 8p7r:A (1.85) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    852045 8p7r:A (1.85) BS03 GB 3.1.8.1 GO:0004063 ... P0A434 37860961
    852046 8p7r:A (1.85) BS04 E8N 3.1.8.1 GO:0004063 ... P0A434 37860961
    852047 8p7s:A (1.77) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    852048 8p7s:A (1.77) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    852049 8p7s:A (1.77) BS03 E8N 3.1.8.1 GO:0004063 ... P0A434 37860961
    852050 8p7s:A (1.77) BS04 VX 3.1.8.1 GO:0004063 ... P0A434 37860961
    852051 8p7t:A (1.8) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    852052 8p7t:A (1.8) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    852053 8p7t:A (1.8) BS03 VX 3.1.8.1 GO:0004063 ... P0A434 37860961
    852054 8p7t:A (1.8) BS04 E8N 3.1.8.1 GO:0004063 ... P0A434 37860961
    852055 8p7t:A (1.8) BS05 VX 3.1.8.1 GO:0004063 ... P0A434 37860961
    852056 8p7u:A (1.38) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    852057 8p7u:A (1.38) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    852058 8p7u:A (1.38) BS03 X3T 3.1.8.1 GO:0004063 ... P0A434 37860961
    852059 8p7u:A (1.38) BS04 E8N 3.1.8.1 GO:0004063 ... P0A434 37860961
    852060 8p7v:A (1.737) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    852061 8p7v:A (1.737) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    852062 8p7v:A (1.737) BS03 E8N 3.1.8.1 GO:0004063 ... P0A434 37860961
    852063 8p7v:A (1.737) BS04 GB 3.1.8.1 GO:0004063 ... P0A434 37860961
    852064 8p7x:0 (3.03) BS01 rna N/A GO:0005840 ... P78006 39668257
    852065 8p7x:1 (3.03) BS01 rna N/A GO:0003735 ... P75447 39668257
    852066 8p7x:2 (3.03) BS01 rna N/A GO:0005737 ... P52864 39668257
    852067 8p7x:2 (3.03) BS02 ZN N/A GO:0005737 ... P52864 39668257
    852068 8p7x:A (3.03) BS01 rna N/A GO:0003735 ... P75560 39668257
    852069 8p7x:B (3.03) BS01 rna N/A GO:0003729 ... P41205 39668257
    852070 8p7x:B (3.03) BS02 rna N/A GO:0003729 ... P41205 39668257
    852071 8p7x:C (3.03) BS01 rna N/A GO:0003735 ... P46775 39668257
    852072 8p7x:C (3.03) BS02 rna N/A GO:0003735 ... P46775 39668257
    852073 8p7x:D (3.03) BS01 rna N/A GO:0005840 ... Q50301 39668257
    852074 8p7x:D (3.03) BS02 rna N/A GO:0005840 ... Q50301 39668257
    852075 8p7x:E (3.03) BS01 rna N/A GO:0005840 ... P75543 39668257
    852076 8p7x:F (3.03) BS01 rna N/A GO:0000049 ... P75545 39668257
    852077 8p7x:F (3.03) BS02 rna N/A GO:0000049 ... P75545 39668257
    852078 8p7x:F (3.03) BS03 rna N/A GO:0000049 ... P75545 39668257
    852079 8p7x:G (3.03) BS01 rna N/A GO:0005840 ... Q50304 39668257
    852080 8p7x:H (3.03) BS01 rna N/A GO:0003723 ... P75179 39668257
    852081 8p7x:I (3.03) BS01 rna N/A GO:0000049 ... P75581 39668257
    852082 8p7x:J (3.03) BS01 rna N/A GO:0005840 ... Q50296 39668257
    852083 8p7x:K (3.03) BS01 rna N/A GO:0000049 ... P75546 39668257
    852084 8p7x:L (3.03) BS01 rna N/A GO:0000049 ... Q50297 39668257
    852085 8p7x:L (3.03) BS02 rna N/A GO:0000049 ... Q50297 39668257
    852086 8p7x:L (3.03) BS03 rna N/A GO:0000049 ... Q50297 39668257
    852087 8p7x:L (3.03) BS04 rna N/A GO:0000049 ... Q50297 39668257
    852088 8p7x:M (3.03) BS01 rna N/A GO:0003735 ... Q50305 39668257
    852089 8p7x:M (3.03) BS02 ZN N/A GO:0003735 ... Q50305 39668257
    852090 8p7x:N (3.03) BS01 rna N/A GO:0005737 ... P75173 39668257
    852091 8p7x:N (3.03) BS02 rna N/A GO:0005737 ... P75173 39668257
    852092 8p7x:O (3.03) BS01 rna N/A GO:0003735 ... P75131 39668257
    852093 8p7x:P (3.03) BS01 rna N/A GO:0003735 ... Q50309 39668257
    852094 8p7x:Q (3.03) BS01 rna N/A GO:0003735 ... P75541 39668257
    852095 8p7x:Q (3.03) BS02 ZN N/A GO:0003735 ... P75541 39668257
    852096 8p7x:R (3.03) BS01 rna N/A GO:0000028 ... P75576 39668257
    852097 8p7x:S (3.03) BS01 rna N/A GO:0005840 ... P75237 39668257
    852098 8p7x:T (3.03) BS01 rna N/A GO:0005840 ... P57079 39668257
    852099 8p7x:X (3.03) BS01 rna N/A GO:0003755 ... P75454 39668257
    852100 8p7x:Z (3.03) BS01 rna N/A N/A N/A 39668257
    852101 8p7x:Z (3.03) BS02 CLM N/A N/A N/A 39668257
    852102 8p7x:a (3.03) BS01 rna N/A GO:0002181 ... P75577 39668257
    852103 8p7x:b (3.03) BS01 rna N/A GO:0003735 ... P75580 39668257
    852104 8p7x:c (3.03) BS01 rna N/A GO:0003735 ... P75579 39668257
    852105 8p7x:d (3.03) BS01 rna N/A GO:0000049 ... Q50306 39668257
    852106 8p7x:d (3.03) BS02 rna N/A GO:0000049 ... Q50306 39668257
    852107 8p7x:d (3.03) BS03 rna N/A GO:0000049 ... Q50306 39668257
    852108 8p7x:e (3.03) BS01 rna N/A GO:0002181 ... Q50303 39668257
    852109 8p7x:f (3.03) BS01 rna N/A GO:0005840 ... P75540 39668257
    852110 8p7x:g (3.03) BS01 rna N/A GO:0005840 ... P75240 39668257
    852111 8p7x:h (3.03) BS01 rna N/A GO:0003735 ... P75550 39668257
    852112 8p7x:i (3.03) BS01 rna N/A GO:0003729 ... P75178 39668257
    852113 8p7x:j (3.03) BS01 rna N/A GO:0003735 ... Q50308 39668257
    852114 8p7x:j (3.03) BS02 rna N/A GO:0003735 ... Q50308 39668257
    852115 8p7x:k (3.03) BS01 rna N/A GO:0003735 ... Q50300 39668257
    852116 8p7x:l (3.03) BS01 rna N/A GO:0000049 ... P41204 39668257
    852117 8p7x:l (3.03) BS02 rna N/A GO:0000049 ... P41204 39668257
    852118 8p7x:m (3.03) BS01 rna N/A GO:0003735 ... Q59547 39668257
    852119 8p7x:n (3.03) BS01 rna N/A GO:0005737 ... Q50302 39668257
    852120 8p7x:n (3.03) BS02 rna N/A GO:0005737 ... Q50302 39668257
    852121 8p7x:o (3.03) BS01 rna N/A GO:0003735 ... P75133 39668257
    852122 8p7x:o (3.03) BS02 rna N/A GO:0003735 ... P75133 39668257
    852123 8p7x:p (3.03) BS01 rna N/A GO:0000027 ... P78023 39668257
    852124 8p7x:q (3.03) BS01 rna N/A GO:0003735 ... P78026 39668257
    852125 8p7x:r (3.03) BS01 rna N/A GO:0003735 ... P75575 39668257
    852126 8p7x:r (3.03) BS02 N2P N/A GO:0003735 ... P75575 39668257
    852127 8p7x:s (3.03) BS01 rna N/A GO:0005840 ... P75578 39668257
    852128 8p7x:t (3.03) BS01 rna N/A GO:0005840 ... Q50307 39668257
    852129 8p7x:u (3.03) BS01 rna N/A GO:0003735 ... P75458 39668257
    852130 8p7x:u (3.03) BS02 rna N/A GO:0003735 ... P75458 39668257
    852131 8p7x:v (3.03) BS01 rna N/A GO:0005840 ... P75171 39668257
    852132 8p7x:w (3.03) BS01 rna N/A GO:0005840 ... Q50310 39668257
    852133 8p7x:x (3.03) BS01 rna N/A GO:0005840 ... P78020 39668257
    852134 8p7x:y (3.03) BS01 rna N/A GO:0005840 ... P75238 39668257
    852135 8p7x:y (3.03) BS02 ZN N/A GO:0005840 ... P75238 39668257
    852136 8p7x:z (3.03) BS01 rna N/A GO:0005737 ... P78015 39668257
    852137 8p7y:0 (3.7) BS01 rna N/A GO:0005840 ... P78006 39668257
    852138 8p7y:1 (3.7) BS01 rna N/A GO:0003735 ... P75447 39668257
    852139 8p7y:2 (3.7) BS01 rna N/A GO:0005737 ... P52864 39668257
    852140 8p7y:2 (3.7) BS02 ZN N/A GO:0005737 ... P52864 39668257
    852141 8p7y:A (3.7) BS01 rna N/A GO:0003735 ... P75560 39668257
    852142 8p7y:B (3.7) BS01 rna N/A GO:0003729 ... P41205 39668257
    852143 8p7y:B (3.7) BS02 rna N/A GO:0003729 ... P41205 39668257
    852144 8p7y:C (3.7) BS01 rna N/A GO:0003735 ... P46775 39668257
    852145 8p7y:C (3.7) BS02 rna N/A GO:0003735 ... P46775 39668257
    852146 8p7y:D (3.7) BS01 rna N/A GO:0005840 ... Q50301 39668257
    852147 8p7y:D (3.7) BS02 rna N/A GO:0005840 ... Q50301 39668257
    852148 8p7y:E (3.7) BS01 rna N/A GO:0005840 ... P75543 39668257
    852149 8p7y:F (3.7) BS01 rna N/A GO:0000049 ... P75545 39668257
    852150 8p7y:F (3.7) BS02 rna N/A GO:0000049 ... P75545 39668257
    852151 8p7y:F (3.7) BS03 rna N/A GO:0000049 ... P75545 39668257
    852152 8p7y:G (3.7) BS01 rna N/A GO:0005840 ... Q50304 39668257
    852153 8p7y:H (3.7) BS01 rna N/A GO:0003723 ... P75179 39668257
    852154 8p7y:H (3.7) BS02 rna N/A GO:0003723 ... P75179 39668257
    852155 8p7y:I (3.7) BS01 rna N/A GO:0000049 ... P75581 39668257
    852156 8p7y:J (3.7) BS01 rna N/A GO:0005840 ... Q50296 39668257
    852157 8p7y:K (3.7) BS01 rna N/A GO:0000049 ... P75546 39668257
    852158 8p7y:L (3.7) BS01 rna N/A GO:0000049 ... Q50297 39668257
    852159 8p7y:L (3.7) BS02 rna N/A GO:0000049 ... Q50297 39668257
    852160 8p7y:L (3.7) BS03 rna N/A GO:0000049 ... Q50297 39668257
    852161 8p7y:L (3.7) BS04 rna N/A GO:0000049 ... Q50297 39668257
    852162 8p7y:M (3.7) BS01 rna N/A GO:0003735 ... Q50305 39668257
    852163 8p7y:M (3.7) BS02 ZN N/A GO:0003735 ... Q50305 39668257
    852164 8p7y:N (3.7) BS01 rna N/A GO:0005737 ... P75173 39668257
    852165 8p7y:N (3.7) BS02 rna N/A GO:0005737 ... P75173 39668257
    852166 8p7y:O (3.7) BS01 rna N/A GO:0003735 ... P75131 39668257
    852167 8p7y:P (3.7) BS01 rna N/A GO:0003735 ... Q50309 39668257
    852168 8p7y:P (3.7) BS02 MG N/A GO:0003735 ... Q50309 39668257
    852169 8p7y:Q (3.7) BS01 rna N/A GO:0003735 ... P75541 39668257
    852170 8p7y:Q (3.7) BS02 ZN N/A GO:0003735 ... P75541 39668257
    852171 8p7y:R (3.7) BS01 rna N/A GO:0000028 ... P75576 39668257
    852172 8p7y:S (3.7) BS01 rna N/A GO:0005840 ... P75237 39668257
    852173 8p7y:T (3.7) BS01 rna N/A GO:0005840 ... P57079 39668257
    852174 8p7y:U (3.7) BS01 rna N/A GO:0003735 ... P46775 39668257
    852175 8p7y:X (3.7) BS01 rna N/A GO:0003755 ... P75454 39668257
    852176 8p7y:Z (3.7) BS01 rna N/A N/A N/A 39668257
    852177 8p7y:Z (3.7) BS02 CLM N/A N/A N/A 39668257
    852178 8p7y:a (3.7) BS01 rna N/A GO:0002181 ... P75577 39668257
    852179 8p7y:b (3.7) BS01 rna N/A GO:0003735 ... P75580 39668257
    852180 8p7y:b (3.7) BS02 MG N/A GO:0003735 ... P75580 39668257
    852181 8p7y:c (3.7) BS01 rna N/A GO:0003735 ... P75579 39668257
    852182 8p7y:d (3.7) BS01 rna N/A GO:0000049 ... Q50306 39668257
    852183 8p7y:d (3.7) BS02 rna N/A GO:0000049 ... Q50306 39668257
    852184 8p7y:d (3.7) BS03 rna N/A GO:0000049 ... Q50306 39668257
    852185 8p7y:e (3.7) BS01 rna N/A GO:0002181 ... Q50303 39668257
    852186 8p7y:f (3.7) BS01 rna N/A GO:0005840 ... P75540 39668257
    852187 8p7y:g (3.7) BS01 rna N/A GO:0005840 ... P75240 39668257
    852188 8p7y:h (3.7) BS01 rna N/A GO:0003735 ... P75550 39668257
    852189 8p7y:i (3.7) BS01 rna N/A GO:0003729 ... P75178 39668257
    852190 8p7y:j (3.7) BS01 rna N/A GO:0003735 ... Q50308 39668257
    852191 8p7y:j (3.7) BS02 rna N/A GO:0003735 ... Q50308 39668257
    852192 8p7y:k (3.7) BS01 rna N/A GO:0003735 ... Q50300 39668257
    852193 8p7y:l (3.7) BS01 rna N/A GO:0000049 ... P41204 39668257
    852194 8p7y:l (3.7) BS02 rna N/A GO:0000049 ... P41204 39668257
    852195 8p7y:m (3.7) BS01 rna N/A GO:0003735 ... Q59547 39668257
    852196 8p7y:n (3.7) BS01 rna N/A GO:0005737 ... Q50302 39668257
    852197 8p7y:n (3.7) BS02 rna N/A GO:0005737 ... Q50302 39668257
    852198 8p7y:o (3.7) BS01 rna N/A GO:0003735 ... P75133 39668257
    852199 8p7y:o (3.7) BS02 rna N/A GO:0003735 ... P75133 39668257
    852200 8p7y:p (3.7) BS01 rna N/A GO:0000027 ... P78023 39668257

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).