SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    852201 8p7y:q (3.7) BS01 rna N/A GO:0003735 ... P78026 39668257
    852202 8p7y:r (3.7) BS01 rna N/A GO:0003735 ... P75575 39668257
    852203 8p7y:s (3.7) BS01 rna N/A GO:0005840 ... P75578 39668257
    852204 8p7y:t (3.7) BS01 rna N/A GO:0005840 ... Q50307 39668257
    852205 8p7y:u (3.7) BS01 rna N/A GO:0003735 ... P75458 39668257
    852206 8p7y:u (3.7) BS02 rna N/A GO:0003735 ... P75458 39668257
    852207 8p7y:v (3.7) BS01 rna N/A GO:0005840 ... P75171 39668257
    852208 8p7y:w (3.7) BS01 rna N/A GO:0005840 ... Q50310 39668257
    852209 8p7y:x (3.7) BS01 rna N/A GO:0005840 ... P78020 39668257
    852210 8p7y:x (3.7) BS02 ZN N/A GO:0005840 ... P78020 39668257
    852211 8p7y:y (3.7) BS01 rna N/A GO:0005840 ... P75238 39668257
    852212 8p7y:y (3.7) BS02 ZN N/A GO:0005840 ... P75238 39668257
    852213 8p7y:z (3.7) BS01 rna N/A GO:0005737 ... P78015 39668257
    852214 8p81:A (2.68) BS01 RMF 2.7.11.22
    2.7.11.23
    GO:0004672 ... Q9NYV4 38016516
    852215 8p82:A (3.36) BS01 ZN 2.3.2.26 GO:0000209 ... O95071 37478846
    852216 8p82:A (3.36) BS02 ZN 2.3.2.26 GO:0000209 ... O95071 37478846
    852217 8p82:A (3.36) BS03 ZN 2.3.2.26 GO:0000209 ... O95071 37478846
    852218 8p82:B (3.36) BS01 ZN 2.3.2.26 GO:0000209 ... O95071 37478846
    852219 8p82:B (3.36) BS02 ZN 2.3.2.26 GO:0000209 ... O95071 37478846
    852220 8p82:B (3.36) BS03 ZN 2.3.2.26 GO:0000209 ... O95071 37478846
    852221 8p84:A (1.5) BS01 FAD N/A GO:0016491 ... N/A 37814408
    852222 8p84:B (1.5) BS01 FAD N/A GO:0016491 ... N/A 37814408
    852223 8p84:B (1.5) BS02 MG N/A GO:0016491 ... N/A 37814408
    852224 8p86:A (1.85) BS01 ALD 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 38051605
    852225 8p87:A (1.7) BS01 X77 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 38051605
    852226 8p8b:0 (2.9) BS01 rna N/A GO:0005840 ... P78006 39668257
    852227 8p8b:1 (2.9) BS01 rna N/A GO:0003735 ... P75447 39668257
    852228 8p8b:2 (2.9) BS01 rna N/A GO:0005737 ... P52864 39668257
    852229 8p8b:2 (2.9) BS02 ZN N/A GO:0005737 ... P52864 39668257
    852230 8p8b:X (2.9) BS01 rna N/A GO:0003755 ... P75454 39668257
    852231 8p8b:Z (2.9) BS01 rna N/A N/A N/A 39668257
    852232 8p8b:Z (2.9) BS02 CLM N/A N/A N/A 39668257
    852233 8p8b:a (2.9) BS01 rna N/A GO:0002181 ... P75577 39668257
    852234 8p8b:b (2.9) BS01 rna N/A GO:0003735 ... P75580 39668257
    852235 8p8b:c (2.9) BS01 rna N/A GO:0003735 ... P75579 39668257
    852236 8p8b:d (2.9) BS01 rna N/A GO:0000049 ... Q50306 39668257
    852237 8p8b:d (2.9) BS02 rna N/A GO:0000049 ... Q50306 39668257
    852238 8p8b:d (2.9) BS03 rna N/A GO:0000049 ... Q50306 39668257
    852239 8p8b:e (2.9) BS01 rna N/A GO:0002181 ... Q50303 39668257
    852240 8p8b:f (2.9) BS01 rna N/A GO:0005840 ... P75540 39668257
    852241 8p8b:g (2.9) BS01 rna N/A GO:0005840 ... P75240 39668257
    852242 8p8b:h (2.9) BS01 rna N/A GO:0003735 ... P75550 39668257
    852243 8p8b:i (2.9) BS01 rna N/A GO:0003729 ... P75178 39668257
    852244 8p8b:j (2.9) BS01 rna N/A GO:0003735 ... Q50308 39668257
    852245 8p8b:k (2.9) BS01 rna N/A GO:0003735 ... Q50300 39668257
    852246 8p8b:l (2.9) BS01 rna N/A GO:0000049 ... P41204 39668257
    852247 8p8b:l (2.9) BS02 rna N/A GO:0000049 ... P41204 39668257
    852248 8p8b:m (2.9) BS01 rna N/A GO:0003735 ... Q59547 39668257
    852249 8p8b:n (2.9) BS01 rna N/A GO:0005737 ... Q50302 39668257
    852250 8p8b:n (2.9) BS02 rna N/A GO:0005737 ... Q50302 39668257
    852251 8p8b:o (2.9) BS01 rna N/A GO:0003735 ... P75133 39668257
    852252 8p8b:p (2.9) BS01 rna N/A GO:0000027 ... P78023 39668257
    852253 8p8b:q (2.9) BS01 rna N/A GO:0003735 ... P78026 39668257
    852254 8p8b:r (2.9) BS01 rna N/A GO:0003735 ... P75575 39668257
    852255 8p8b:r (2.9) BS02 N2P N/A GO:0003735 ... P75575 39668257
    852256 8p8b:s (2.9) BS01 rna N/A GO:0005840 ... P75578 39668257
    852257 8p8b:t (2.9) BS01 rna N/A GO:0005840 ... Q50307 39668257
    852258 8p8b:u (2.9) BS01 rna N/A GO:0003735 ... P75458 39668257
    852259 8p8b:u (2.9) BS02 rna N/A GO:0003735 ... P75458 39668257
    852260 8p8b:v (2.9) BS01 rna N/A GO:0005840 ... P75171 39668257
    852261 8p8b:w (2.9) BS01 rna N/A GO:0005840 ... Q50310 39668257
    852262 8p8b:y (2.9) BS01 rna N/A GO:0005840 ... P75238 39668257
    852263 8p8b:y (2.9) BS02 ZN N/A GO:0005840 ... P75238 39668257
    852264 8p8b:z (2.9) BS01 rna N/A GO:0005737 ... P78015 39668257
    852265 8p8c:A (1.653) BS01 X5T 2.4.99.20
    3.2.2.-
    3.2.2.6
    GO:0061809 ... P28907 N/A
    852266 8p8f:A (1.8) BS01 XBW N/A GO:0016787 ... N/A 38868102
    852267 8p8f:B (1.8) BS01 XBW N/A GO:0016787 ... N/A 38868102
    852268 8p8g:A (1.55) BS01 ICS 1.18.6.1 GO:0005524 ... P07328 38034976
    852269 8p8g:A (1.55) BS02 1CL 1.18.6.1 GO:0005524 ... P07328 38034976
    852270 8p8g:A (1.55) BS03 CLF 1.18.6.1 GO:0005524 ... P07328 38034976
    852271 8p8g:B (1.55) BS01 1CL 1.18.6.1 GO:0005524 ... P07329 38034976
    852272 8p8g:B (1.55) BS02 CLF 1.18.6.1 GO:0005524 ... P07329 38034976
    852273 8p8g:C (1.55) BS01 ICS 1.18.6.1 GO:0005524 ... P07328 38034976
    852274 8p8g:C (1.55) BS02 1CL 1.18.6.1 GO:0005524 ... P07328 38034976
    852275 8p8g:C (1.55) BS03 CLF 1.18.6.1 GO:0005524 ... P07328 38034976
    852276 8p8g:D (1.55) BS01 1CL 1.18.6.1 GO:0005524 ... P07329 38034976
    852277 8p8g:D (1.55) BS02 CLF 1.18.6.1 GO:0005524 ... P07329 38034976
    852278 8p8k:AAA (2.8) BS01 X7C N/A GO:0006633 ... N/A 37677080
    852279 8p8k:BBB (2.8) BS01 X7C N/A GO:0006633 ... N/A 37677080
    852280 8p8m:JT (2.66) BS01 rna ? GO:0002181 ... Q12690 39041433
    852281 8p8m:JT (2.66) BS02 rna ? GO:0002181 ... Q12690 39041433
    852282 8p8m:JU (2.66) BS01 rna ? GO:0000027 ... P36105 39041433
    852283 8p8m:JV (2.66) BS01 rna ? GO:0002181 ... P05748 39041433
    852284 8p8m:JV (2.66) BS02 rna ? GO:0002181 ... P05748 39041433
    852285 8p8m:JW (2.66) BS01 rna ? GO:0000470 ... P26784 39041433
    852286 8p8m:LF (2.66) BS01 rna ? GO:0002181 ... P0CX45 39041433
    852287 8p8m:LG (2.66) BS01 rna ? GO:0000027 ... P14126 39041433
    852288 8p8m:LG (2.66) BS02 MG ? GO:0000027 ... P14126 39041433
    852289 8p8m:LH (2.66) BS01 rna ? GO:0002181 ... P10664 39041433
    852290 8p8m:LH (2.66) BS02 rna ? GO:0002181 ... P10664 39041433
    852291 8p8m:LI (2.66) BS01 rna ? GO:0000027 ... P26321 39041433
    852292 8p8m:LI (2.66) BS02 rna ? GO:0000027 ... P26321 39041433
    852293 8p8m:LJ (2.66) BS01 rna ? GO:0000027 ... Q02326 39041433
    852294 8p8m:LK (2.66) BS01 rna ? GO:0000463 ... P05737 39041433
    852295 8p8m:LK (2.66) BS02 rna ? GO:0000463 ... P05737 39041433
    852296 8p8m:LL (2.66) BS01 rna ? GO:0000470 ... P17076 39041433
    852297 8p8m:LL (2.66) BS02 rna ? GO:0000470 ... P17076 39041433
    852298 8p8m:LM (2.66) BS01 rna ? GO:0002181 ... P05738 39041433
    852299 8p8m:LN (2.66) BS01 rna ? GO:0000027 ... P41805 39041433
    852300 8p8m:LN (2.66) BS02 rna ? GO:0000027 ... P41805 39041433
    852301 8p8m:LO (2.66) BS01 rna ? GO:0000027 ... P0C0W9 39041433
    852302 8p8m:LO (2.66) BS02 rna ? GO:0000027 ... P0C0W9 39041433
    852303 8p8m:QO (2.66) BS01 rna ? GO:0000448 ... P05740 39041433
    852304 8p8m:QO (2.66) BS02 rna ? GO:0000448 ... P05740 39041433
    852305 8p8m:QP (2.66) BS01 rna ? GO:0002181 ... P0CX49 39041433
    852306 8p8m:QQ (2.66) BS01 rna ? GO:0002181 ... P0CX82 39041433
    852307 8p8m:QS (2.66) BS01 rna ? GO:0002181 ... P0CX23 39041433
    852308 8p8m:QS (2.66) BS02 rna ? GO:0002181 ... P0CX23 39041433
    852309 8p8m:QT (2.66) BS01 rna ? GO:0002181 ... Q02753 39041433
    852310 8p8m:QT (2.66) BS02 rna ? GO:0002181 ... Q02753 39041433
    852311 8p8m:QU (2.66) BS01 rna ? GO:0002181 ... P05749 39041433
    852312 8p8m:QV (2.66) BS01 rna ? GO:0002181 ... P0CX41 39041433
    852313 8p8m:QW (2.66) BS01 rna ? GO:0002181 ... P04449 39041433
    852314 8p8m:QX (2.66) BS01 rna ? GO:0000027 ... P04456 39041433
    852315 8p8m:QX (2.66) BS02 rna ? GO:0000027 ... P04456 39041433
    852316 8p8m:QY (2.66) BS01 rna ? GO:0002181 ... P05743 39041433
    852317 8p8m:QY (2.66) BS02 rna ? GO:0002181 ... P05743 39041433
    852318 8p8m:QZ (2.66) BS01 rna ? GO:0002181 ... P0C2H6 39041433
    852319 8p8m:RA (2.66) BS01 rna ? GO:0002181 ... P02406 39041433
    852320 8p8m:RB (2.66) BS01 rna ? GO:0002181 ... P05747 39041433
    852321 8p8m:RC (2.66) BS01 rna ? GO:0002181 ... P14120 39041433
    852322 8p8m:RD (2.66) BS01 rna ? GO:0002181 ... P0C2H8 39041433
    852323 8p8m:RE (2.66) BS01 rna ? GO:0002181 ... P38061 39041433
    852324 8p8m:RF (2.66) BS01 rna ? GO:0000027 ... P05744 39041433
    852325 8p8m:RG (2.66) BS01 rna ? GO:0002181 ... P87262 39041433
    852326 8p8m:RG (2.66) BS02 ZN ? GO:0002181 ... P87262 39041433
    852327 8p8m:RH (2.66) BS01 rna ? GO:0000463 ... P0CX84 39041433
    852328 8p8m:RH (2.66) BS02 rna ? GO:0000463 ... P0CX84 39041433
    852329 8p8m:RI (2.66) BS01 rna ? GO:0002181 ... P05745 39041433
    852330 8p8m:RJ (2.66) BS01 rna ? GO:0000448 ... P49166 39041433
    852331 8p8m:RJ (2.66) BS02 rna ? GO:0000448 ... P49166 39041433
    852332 8p8m:RJ (2.66) BS03 ZN ? GO:0000448 ... P49166 39041433
    852333 8p8m:RM (2.66) BS01 rna ? GO:0002181 ... P49167 39041433
    852334 8p8m:RO (2.66) BS01 rna ? GO:0000027 ... P0CH08 39041433
    852335 8p8m:RO (2.66) BS02 ZN ? GO:0000027 ... P0CH08 39041433
    852336 8p8m:RQ (2.66) BS01 rna ? GO:0002181 ... P0CX27 39041433
    852337 8p8m:RQ (2.66) BS02 ZN ? GO:0002181 ... P0CX27 39041433
    852338 8p8m:RT (2.66) BS01 rna ? GO:0002181 ... P0CX25 39041433
    852339 8p8m:RT (2.66) BS02 ZN ? GO:0002181 ... P0CX25 39041433
    852340 8p8n:2 (2.15) BS01 rna ? GO:0002181 ... P62892 39041433
    852341 8p8n:2 (2.15) BS02 rna ? GO:0002181 ... P62892 39041433
    852342 8p8n:JT (2.15) BS01 rna ? GO:0002181 ... Q12690 39041433
    852343 8p8n:JT (2.15) BS02 rna ? GO:0002181 ... Q12690 39041433
    852344 8p8n:JU (2.15) BS01 rna ? GO:0000027 ... P36105 39041433
    852345 8p8n:JV (2.15) BS01 rna ? GO:0002181 ... P05748 39041433
    852346 8p8n:JV (2.15) BS02 rna ? GO:0002181 ... P05748 39041433
    852347 8p8n:JW (2.15) BS01 rna ? GO:0000470 ... P26784 39041433
    852348 8p8n:LF (2.15) BS01 rna ? GO:0002181 ... P0CX45 39041433
    852349 8p8n:LG (2.15) BS01 rna ? GO:0000027 ... P14126 39041433
    852350 8p8n:LH (2.15) BS01 rna ? GO:0002181 ... P10664 39041433
    852351 8p8n:LH (2.15) BS02 rna ? GO:0002181 ... P10664 39041433
    852352 8p8n:LH (2.15) BS03 MG ? GO:0002181 ... P10664 39041433
    852353 8p8n:LI (2.15) BS01 rna ? GO:0000027 ... P26321 39041433
    852354 8p8n:LI (2.15) BS02 rna ? GO:0000027 ... P26321 39041433
    852355 8p8n:LJ (2.15) BS01 rna ? GO:0000027 ... Q02326 39041433
    852356 8p8n:LK (2.15) BS01 rna ? GO:0000463 ... P05737 39041433
    852357 8p8n:LK (2.15) BS02 rna ? GO:0000463 ... P05737 39041433
    852358 8p8n:LL (2.15) BS01 rna ? GO:0000470 ... P17076 39041433
    852359 8p8n:LL (2.15) BS02 rna ? GO:0000470 ... P17076 39041433
    852360 8p8n:LM (2.15) BS01 rna ? GO:0002181 ... P05738 39041433
    852361 8p8n:LN (2.15) BS01 rna ? GO:0000027 ... P41805 39041433
    852362 8p8n:LN (2.15) BS02 rna ? GO:0000027 ... P41805 39041433
    852363 8p8n:LN (2.15) BS03 MG ? GO:0000027 ... P41805 39041433
    852364 8p8n:LO (2.15) BS01 rna ? GO:0000027 ... P0C0W9 39041433
    852365 8p8n:LO (2.15) BS02 rna ? GO:0000027 ... P0C0W9 39041433
    852366 8p8n:QO (2.15) BS01 rna ? GO:0000448 ... P05740 39041433
    852367 8p8n:QO (2.15) BS02 rna ? GO:0000448 ... P05740 39041433
    852368 8p8n:QP (2.15) BS01 rna ? GO:0002181 ... P0CX49 39041433
    852369 8p8n:QQ (2.15) BS01 rna ? GO:0002181 ... P0CX82 39041433
    852370 8p8n:QQ (2.15) BS02 MG ? GO:0002181 ... P0CX82 39041433
    852371 8p8n:QS (2.15) BS01 rna ? GO:0002181 ... P0CX23 39041433
    852372 8p8n:QS (2.15) BS02 rna ? GO:0002181 ... P0CX23 39041433
    852373 8p8n:QT (2.15) BS01 rna ? GO:0002181 ... Q02753 39041433
    852374 8p8n:QT (2.15) BS02 rna ? GO:0002181 ... Q02753 39041433
    852375 8p8n:QU (2.15) BS01 rna ? GO:0002181 ... P05749 39041433
    852376 8p8n:QV (2.15) BS01 rna ? GO:0002181 ... P0CX41 39041433
    852377 8p8n:QW (2.15) BS01 rna ? GO:0002181 ... P04449 39041433
    852378 8p8n:QX (2.15) BS01 rna ? GO:0000027 ... P04456 39041433
    852379 8p8n:QX (2.15) BS02 rna ? GO:0000027 ... P04456 39041433
    852380 8p8n:QY (2.15) BS01 rna ? GO:0002181 ... P05743 39041433
    852381 8p8n:QY (2.15) BS02 rna ? GO:0002181 ... P05743 39041433
    852382 8p8n:QZ (2.15) BS01 rna ? GO:0002181 ... P0C2H6 39041433
    852383 8p8n:RA (2.15) BS01 rna ? GO:0002181 ... P02406 39041433
    852384 8p8n:RB (2.15) BS01 rna ? GO:0002181 ... P05747 39041433
    852385 8p8n:RC (2.15) BS01 rna ? GO:0002181 ... P14120 39041433
    852386 8p8n:RD (2.15) BS01 rna ? GO:0002181 ... P0C2H8 39041433
    852387 8p8n:RE (2.15) BS01 rna ? GO:0002181 ... P38061 39041433
    852388 8p8n:RF (2.15) BS01 rna ? GO:0000027 ... P05744 39041433
    852389 8p8n:RG (2.15) BS01 rna ? GO:0002181 ... P87262 39041433
    852390 8p8n:RG (2.15) BS02 ZN ? GO:0002181 ... P87262 39041433
    852391 8p8n:RH (2.15) BS01 rna ? GO:0000463 ... P0CX84 39041433
    852392 8p8n:RH (2.15) BS02 rna ? GO:0000463 ... P0CX84 39041433
    852393 8p8n:RI (2.15) BS01 rna ? GO:0002181 ... P05745 39041433
    852394 8p8n:RI (2.15) BS02 MG ? GO:0002181 ... P05745 39041433
    852395 8p8n:RJ (2.15) BS01 rna ? GO:0000448 ... P49166 39041433
    852396 8p8n:RJ (2.15) BS02 rna ? GO:0000448 ... P49166 39041433
    852397 8p8n:RJ (2.15) BS03 ZN ? GO:0000448 ... P49166 39041433
    852398 8p8n:RM (2.15) BS01 rna ? GO:0002181 ... P49167 39041433
    852399 8p8n:RO (2.15) BS01 rna ? GO:0000027 ... P0CH08 39041433
    852400 8p8n:RO (2.15) BS02 ZN ? GO:0000027 ... P0CH08 39041433

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).