SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    852401 8p8n:RQ (2.15) BS01 rna ? GO:0002181 ... P0CX27 39041433
    852402 8p8n:RQ (2.15) BS02 ZN ? GO:0002181 ... P0CX27 39041433
    852403 8p8n:RT (2.15) BS01 rna ? GO:0002181 ... P0CX25 39041433
    852404 8p8n:RT (2.15) BS02 ZN ? GO:0002181 ... P0CX25 39041433
    852405 8p8p:A (1.9) BS01 X7I 3.4.22.-
    3.9.1.-
    GO:0000118 ... P49773 N/A
    852406 8p8u:2 (2.23) BS01 rna ? GO:0002181 ... P04650 39041433
    852407 8p8u:2 (2.23) BS02 rna ? GO:0002181 ... P04650 39041433
    852408 8p8u:JT (2.23) BS01 rna ? GO:0002181 ... Q12690 39041433
    852409 8p8u:JT (2.23) BS02 rna ? GO:0002181 ... Q12690 39041433
    852410 8p8u:JU (2.23) BS01 rna ? GO:0000027 ... P36105 39041433
    852411 8p8u:JV (2.23) BS01 rna ? GO:0002181 ... P05748 39041433
    852412 8p8u:JV (2.23) BS02 rna ? GO:0002181 ... P05748 39041433
    852413 8p8u:JW (2.23) BS01 rna ? GO:0000470 ... P26784 39041433
    852414 8p8u:LF (2.23) BS01 rna ? GO:0002181 ... P0CX45 39041433
    852415 8p8u:LG (2.23) BS01 rna ? GO:0000027 ... P14126 39041433
    852416 8p8u:LH (2.23) BS01 rna ? GO:0002181 ... P10664 39041433
    852417 8p8u:LH (2.23) BS02 rna ? GO:0002181 ... P10664 39041433
    852418 8p8u:LI (2.23) BS01 rna ? GO:0000027 ... P26321 39041433
    852419 8p8u:LI (2.23) BS02 rna ? GO:0000027 ... P26321 39041433
    852420 8p8u:LJ (2.23) BS01 rna ? GO:0000027 ... Q02326 39041433
    852421 8p8u:LK (2.23) BS01 rna ? GO:0000463 ... P05737 39041433
    852422 8p8u:LK (2.23) BS02 rna ? GO:0000463 ... P05737 39041433
    852423 8p8u:LL (2.23) BS01 rna ? GO:0000470 ... P17076 39041433
    852424 8p8u:LL (2.23) BS02 rna ? GO:0000470 ... P17076 39041433
    852425 8p8u:LM (2.23) BS01 rna ? GO:0002181 ... P05738 39041433
    852426 8p8u:LN (2.23) BS01 rna ? GO:0000027 ... P41805 39041433
    852427 8p8u:LN (2.23) BS02 rna ? GO:0000027 ... P41805 39041433
    852428 8p8u:LO (2.23) BS01 rna ? GO:0000027 ... P0C0W9 39041433
    852429 8p8u:LO (2.23) BS02 rna ? GO:0000027 ... P0C0W9 39041433
    852430 8p8u:QO (2.23) BS01 rna ? GO:0000448 ... P05740 39041433
    852431 8p8u:QO (2.23) BS02 rna ? GO:0000448 ... P05740 39041433
    852432 8p8u:QP (2.23) BS01 rna ? GO:0002181 ... P0CX49 39041433
    852433 8p8u:QQ (2.23) BS01 rna ? GO:0002181 ... P0CX82 39041433
    852434 8p8u:QS (2.23) BS01 rna ? GO:0002181 ... P0CX23 39041433
    852435 8p8u:QS (2.23) BS02 rna ? GO:0002181 ... P0CX23 39041433
    852436 8p8u:QT (2.23) BS01 rna ? GO:0002181 ... Q02753 39041433
    852437 8p8u:QT (2.23) BS02 rna ? GO:0002181 ... Q02753 39041433
    852438 8p8u:QU (2.23) BS01 rna ? GO:0002181 ... P05749 39041433
    852439 8p8u:QV (2.23) BS01 rna ? GO:0002181 ... P0CX41 39041433
    852440 8p8u:QW (2.23) BS01 rna ? GO:0002181 ... P04449 39041433
    852441 8p8u:QX (2.23) BS01 rna ? GO:0000027 ... P04456 39041433
    852442 8p8u:QX (2.23) BS02 rna ? GO:0000027 ... P04456 39041433
    852443 8p8u:QY (2.23) BS01 rna ? GO:0002181 ... P05743 39041433
    852444 8p8u:QY (2.23) BS02 rna ? GO:0002181 ... P05743 39041433
    852445 8p8u:QZ (2.23) BS01 rna ? GO:0002181 ... P0C2H6 39041433
    852446 8p8u:RA (2.23) BS01 rna ? GO:0002181 ... P02406 39041433
    852447 8p8u:RB (2.23) BS01 rna ? GO:0002181 ... P05747 39041433
    852448 8p8u:RC (2.23) BS01 rna ? GO:0002181 ... P14120 39041433
    852449 8p8u:RD (2.23) BS01 rna ? GO:0002181 ... P0C2H8 39041433
    852450 8p8u:RE (2.23) BS01 rna ? GO:0002181 ... P38061 39041433
    852451 8p8u:RF (2.23) BS01 rna ? GO:0000027 ... P05744 39041433
    852452 8p8u:RG (2.23) BS01 rna ? GO:0002181 ... P87262 39041433
    852453 8p8u:RG (2.23) BS02 ZN ? GO:0002181 ... P87262 39041433
    852454 8p8u:RH (2.23) BS01 rna ? GO:0000463 ... P0CX84 39041433
    852455 8p8u:RH (2.23) BS02 rna ? GO:0000463 ... P0CX84 39041433
    852456 8p8u:RI (2.23) BS01 rna ? GO:0002181 ... P05745 39041433
    852457 8p8u:RJ (2.23) BS01 rna ? GO:0000448 ... P49166 39041433
    852458 8p8u:RJ (2.23) BS02 rna ? GO:0000448 ... P49166 39041433
    852459 8p8u:RJ (2.23) BS03 ZN ? GO:0000448 ... P49166 39041433
    852460 8p8u:RM (2.23) BS01 rna ? GO:0002181 ... P49167 39041433
    852461 8p8u:RO (2.23) BS01 rna ? GO:0000027 ... P0CH08 39041433
    852462 8p8u:RO (2.23) BS02 ZN ? GO:0000027 ... P0CH08 39041433
    852463 8p8u:RQ (2.23) BS01 rna ? GO:0002181 ... P0CX27 39041433
    852464 8p8u:RQ (2.23) BS02 ZN ? GO:0002181 ... P0CX27 39041433
    852465 8p8u:RT (2.23) BS01 rna ? GO:0002181 ... P0CX25 39041433
    852466 8p8u:RT (2.23) BS02 ZN ? GO:0002181 ... P0CX25 39041433
    852467 8p8v:0 (8.7) BS01 rna N/A GO:0005840 ... P78006 39668257
    852468 8p8v:1 (8.7) BS01 rna N/A GO:0003735 ... P75447 39668257
    852469 8p8v:2 (8.7) BS01 rna N/A GO:0005737 ... P52864 39668257
    852470 8p8v:2 (8.7) BS02 ZN N/A GO:0005737 ... P52864 39668257
    852471 8p8v:9 (8.7) BS01 rna N/A GO:0000049 ... P78035 39668257
    852472 8p8v:9 (8.7) BS02 rna N/A GO:0000049 ... P78035 39668257
    852473 8p8v:A (8.7) BS01 rna N/A GO:0003735 ... P75560 39668257
    852474 8p8v:B (8.7) BS01 rna N/A GO:0003729 ... P41205 39668257
    852475 8p8v:B (8.7) BS02 rna N/A GO:0003729 ... P41205 39668257
    852476 8p8v:C (8.7) BS01 rna N/A GO:0003735 ... P46775 39668257
    852477 8p8v:C (8.7) BS02 rna N/A GO:0003735 ... P46775 39668257
    852478 8p8v:D (8.7) BS01 rna N/A GO:0005840 ... Q50301 39668257
    852479 8p8v:D (8.7) BS02 rna N/A GO:0005840 ... Q50301 39668257
    852480 8p8v:E (8.7) BS01 rna N/A GO:0005840 ... P75543 39668257
    852481 8p8v:E (8.7) BS02 rna N/A GO:0005840 ... P75543 39668257
    852482 8p8v:F (8.7) BS01 rna N/A GO:0000049 ... P75545 39668257
    852483 8p8v:F (8.7) BS02 rna N/A GO:0000049 ... P75545 39668257
    852484 8p8v:G (8.7) BS01 rna N/A GO:0005840 ... Q50304 39668257
    852485 8p8v:H (8.7) BS01 rna N/A GO:0003723 ... P75179 39668257
    852486 8p8v:I (8.7) BS01 rna N/A GO:0000049 ... P75581 39668257
    852487 8p8v:J (8.7) BS01 rna N/A GO:0005840 ... Q50296 39668257
    852488 8p8v:K (8.7) BS01 rna N/A GO:0000049 ... P75546 39668257
    852489 8p8v:L (8.7) BS01 rna N/A GO:0000049 ... Q50297 39668257
    852490 8p8v:L (8.7) BS02 rna N/A GO:0000049 ... Q50297 39668257
    852491 8p8v:L (8.7) BS03 rna N/A GO:0000049 ... Q50297 39668257
    852492 8p8v:M (8.7) BS01 rna N/A GO:0003735 ... Q50305 39668257
    852493 8p8v:M (8.7) BS02 ZN N/A GO:0003735 ... Q50305 39668257
    852494 8p8v:N (8.7) BS01 rna N/A GO:0005737 ... P75173 39668257
    852495 8p8v:N (8.7) BS02 rna N/A GO:0005737 ... P75173 39668257
    852496 8p8v:O (8.7) BS01 rna N/A GO:0003735 ... P75131 39668257
    852497 8p8v:P (8.7) BS01 rna N/A GO:0003735 ... Q50309 39668257
    852498 8p8v:Q (8.7) BS01 rna N/A GO:0003735 ... P75541 39668257
    852499 8p8v:Q (8.7) BS02 ZN N/A GO:0003735 ... P75541 39668257
    852500 8p8v:R (8.7) BS01 rna N/A GO:0000028 ... P75576 39668257
    852501 8p8v:S (8.7) BS01 rna N/A GO:0005840 ... P75237 39668257
    852502 8p8v:T (8.7) BS01 rna N/A GO:0005840 ... P57079 39668257
    852503 8p8v:T (8.7) BS02 rna N/A GO:0005840 ... P57079 39668257
    852504 8p8v:Z (8.7) BS01 rna N/A N/A N/A 39668257
    852505 8p8v:Z (8.7) BS02 CLM N/A N/A N/A 39668257
    852506 8p8v:a (8.7) BS01 rna N/A GO:0002181 ... P75577 39668257
    852507 8p8v:b (8.7) BS01 rna N/A GO:0003735 ... P75580 39668257
    852508 8p8v:c (8.7) BS01 rna N/A GO:0003735 ... P75579 39668257
    852509 8p8v:d (8.7) BS01 rna N/A GO:0000049 ... Q50306 39668257
    852510 8p8v:d (8.7) BS02 rna N/A GO:0000049 ... Q50306 39668257
    852511 8p8v:d (8.7) BS03 rna N/A GO:0000049 ... Q50306 39668257
    852512 8p8v:e (8.7) BS01 rna N/A GO:0002181 ... Q50303 39668257
    852513 8p8v:f (8.7) BS01 rna N/A GO:0005840 ... P75540 39668257
    852514 8p8v:g (8.7) BS01 rna N/A GO:0005840 ... P75240 39668257
    852515 8p8v:h (8.7) BS01 rna N/A GO:0003735 ... P75550 39668257
    852516 8p8v:i (8.7) BS01 rna N/A GO:0003729 ... P75178 39668257
    852517 8p8v:j (8.7) BS01 rna N/A GO:0003735 ... Q50308 39668257
    852518 8p8v:j (8.7) BS02 rna N/A GO:0003735 ... Q50308 39668257
    852519 8p8v:k (8.7) BS01 rna N/A GO:0003735 ... Q50300 39668257
    852520 8p8v:l (8.7) BS01 rna N/A GO:0000049 ... P41204 39668257
    852521 8p8v:l (8.7) BS02 rna N/A GO:0000049 ... P41204 39668257
    852522 8p8v:m (8.7) BS01 rna N/A GO:0003735 ... Q59547 39668257
    852523 8p8v:n (8.7) BS01 rna N/A GO:0005737 ... Q50302 39668257
    852524 8p8v:n (8.7) BS02 rna N/A GO:0005737 ... Q50302 39668257
    852525 8p8v:o (8.7) BS01 rna N/A GO:0003735 ... P75133 39668257
    852526 8p8v:o (8.7) BS02 rna N/A GO:0003735 ... P75133 39668257
    852527 8p8v:p (8.7) BS01 rna N/A GO:0000027 ... P78023 39668257
    852528 8p8v:q (8.7) BS01 rna N/A GO:0003735 ... P78026 39668257
    852529 8p8v:r (8.7) BS01 rna N/A GO:0003735 ... P75575 39668257
    852530 8p8v:s (8.7) BS01 rna N/A GO:0005840 ... P75578 39668257
    852531 8p8v:t (8.7) BS01 rna N/A GO:0005840 ... Q50307 39668257
    852532 8p8v:u (8.7) BS01 rna N/A GO:0003735 ... P75458 39668257
    852533 8p8v:u (8.7) BS02 rna N/A GO:0003735 ... P75458 39668257
    852534 8p8v:v (8.7) BS01 rna N/A GO:0005840 ... P75171 39668257
    852535 8p8v:w (8.7) BS01 rna N/A GO:0005840 ... Q50310 39668257
    852536 8p8v:x (8.7) BS01 rna N/A GO:0005840 ... P78020 39668257
    852537 8p8v:x (8.7) BS02 ZN N/A GO:0005840 ... P78020 39668257
    852538 8p8v:y (8.7) BS01 rna N/A GO:0005840 ... P75238 39668257
    852539 8p8v:y (8.7) BS02 ZN N/A GO:0005840 ... P75238 39668257
    852540 8p8v:z (8.7) BS01 rna N/A GO:0005737 ... P78015 39668257
    852541 8p8v:z (8.7) BS02 ZN N/A GO:0005737 ... P78015 39668257
    852542 8p8w:0 (8.7) BS01 rna N/A GO:0005840 ... P78006 39668257
    852543 8p8w:1 (8.7) BS01 rna N/A GO:0003735 ... P75447 39668257
    852544 8p8w:2 (8.7) BS01 rna N/A GO:0005737 ... P52864 39668257
    852545 8p8w:2 (8.7) BS02 ZN N/A GO:0005737 ... P52864 39668257
    852546 8p8w:A (8.7) BS01 rna N/A GO:0003735 ... P75560 39668257
    852547 8p8w:B (8.7) BS01 rna N/A GO:0003729 ... P41205 39668257
    852548 8p8w:B (8.7) BS02 rna N/A GO:0003729 ... P41205 39668257
    852549 8p8w:C (8.7) BS01 rna N/A GO:0003735 ... P46775 39668257
    852550 8p8w:D (8.7) BS01 rna N/A GO:0005840 ... Q50301 39668257
    852551 8p8w:D (8.7) BS02 rna N/A GO:0005840 ... Q50301 39668257
    852552 8p8w:E (8.7) BS01 rna N/A GO:0005840 ... P75543 39668257
    852553 8p8w:F (8.7) BS01 rna N/A GO:0000049 ... P75545 39668257
    852554 8p8w:G (8.7) BS01 rna N/A GO:0005840 ... Q50304 39668257
    852555 8p8w:H (8.7) BS01 rna N/A GO:0003723 ... P75179 39668257
    852556 8p8w:I (8.7) BS01 rna N/A GO:0000049 ... P75581 39668257
    852557 8p8w:J (8.7) BS01 rna N/A GO:0005840 ... Q50296 39668257
    852558 8p8w:K (8.7) BS01 rna N/A GO:0000049 ... P75546 39668257
    852559 8p8w:L (8.7) BS01 rna N/A GO:0000049 ... Q50297 39668257
    852560 8p8w:L (8.7) BS02 rna N/A GO:0000049 ... Q50297 39668257
    852561 8p8w:M (8.7) BS01 rna N/A GO:0003735 ... Q50305 39668257
    852562 8p8w:M (8.7) BS02 ZN N/A GO:0003735 ... Q50305 39668257
    852563 8p8w:N (8.7) BS01 rna N/A GO:0005737 ... P75173 39668257
    852564 8p8w:N (8.7) BS02 rna N/A GO:0005737 ... P75173 39668257
    852565 8p8w:O (8.7) BS01 rna N/A GO:0003735 ... P75131 39668257
    852566 8p8w:P (8.7) BS01 rna N/A GO:0003735 ... Q50309 39668257
    852567 8p8w:Q (8.7) BS01 rna N/A GO:0003735 ... P75541 39668257
    852568 8p8w:Q (8.7) BS02 ZN N/A GO:0003735 ... P75541 39668257
    852569 8p8w:R (8.7) BS01 rna N/A GO:0000028 ... P75576 39668257
    852570 8p8w:S (8.7) BS01 rna N/A GO:0005840 ... P75237 39668257
    852571 8p8w:T (8.7) BS01 rna N/A GO:0005840 ... P57079 39668257
    852572 8p8w:T (8.7) BS02 rna N/A GO:0005840 ... P57079 39668257
    852573 8p8w:U (8.7) BS01 rna N/A GO:0003735 ... P46775 39668257
    852574 8p8w:X (8.7) BS01 rna N/A GO:0003755 ... P75454 39668257
    852575 8p8w:Z (8.7) BS01 rna N/A N/A N/A 39668257
    852576 8p8w:Z (8.7) BS02 CLM N/A N/A N/A 39668257
    852577 8p8w:a (8.7) BS01 rna N/A GO:0002181 ... P75577 39668257
    852578 8p8w:b (8.7) BS01 rna N/A GO:0003735 ... P75580 39668257
    852579 8p8w:b (8.7) BS02 MG N/A GO:0003735 ... P75580 39668257
    852580 8p8w:c (8.7) BS01 rna N/A GO:0003735 ... P75579 39668257
    852581 8p8w:d (8.7) BS01 rna N/A GO:0000049 ... Q50306 39668257
    852582 8p8w:d (8.7) BS02 rna N/A GO:0000049 ... Q50306 39668257
    852583 8p8w:d (8.7) BS03 rna N/A GO:0000049 ... Q50306 39668257
    852584 8p8w:e (8.7) BS01 rna N/A GO:0002181 ... Q50303 39668257
    852585 8p8w:f (8.7) BS01 rna N/A GO:0005840 ... P75540 39668257
    852586 8p8w:g (8.7) BS01 rna N/A GO:0005840 ... P75240 39668257
    852587 8p8w:h (8.7) BS01 rna N/A GO:0003735 ... P75550 39668257
    852588 8p8w:i (8.7) BS01 rna N/A GO:0003729 ... P75178 39668257
    852589 8p8w:j (8.7) BS01 rna N/A GO:0003735 ... Q50308 39668257
    852590 8p8w:j (8.7) BS02 rna N/A GO:0003735 ... Q50308 39668257
    852591 8p8w:k (8.7) BS01 rna N/A GO:0003735 ... Q50300 39668257
    852592 8p8w:l (8.7) BS01 rna N/A GO:0000049 ... P41204 39668257
    852593 8p8w:m (8.7) BS01 rna N/A GO:0003735 ... Q59547 39668257
    852594 8p8w:n (8.7) BS01 rna N/A GO:0005737 ... Q50302 39668257
    852595 8p8w:n (8.7) BS02 rna N/A GO:0005737 ... Q50302 39668257
    852596 8p8w:o (8.7) BS01 rna N/A GO:0003735 ... P75133 39668257
    852597 8p8w:o (8.7) BS02 rna N/A GO:0003735 ... P75133 39668257
    852598 8p8w:p (8.7) BS01 rna N/A GO:0000027 ... P78023 39668257
    852599 8p8w:q (8.7) BS01 rna N/A GO:0003735 ... P78026 39668257
    852600 8p8w:r (8.7) BS01 rna N/A GO:0003735 ... P75575 39668257

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).