SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    853401 8pc6:A (3.04) BS02 dna ? GO:0000786 ... P84233 37615563
    853402 8pc6:B (3.04) BS01 dna ? GO:0000786 ... P62799 37615563
    853403 8pc6:B (3.04) BS02 dna ? GO:0000786 ... P62799 37615563
    853404 8pc6:C (3.04) BS01 dna ? GO:0000786 ... P06897 37615563
    853405 8pc6:C (3.04) BS02 dna ? GO:0000786 ... P06897 37615563
    853406 8pc6:D (3.04) BS01 dna ? GO:0000786 ... P02281 37615563
    853407 8pc6:D (3.04) BS02 dna ? GO:0000786 ... P02281 37615563
    853408 8pc6:E (3.04) BS01 dna ? GO:0000786 ... P84233 37615563
    853409 8pc6:E (3.04) BS02 dna ? GO:0000786 ... P84233 37615563
    853410 8pc6:F (3.04) BS01 dna ? GO:0000786 ... P62799 37615563
    853411 8pc6:F (3.04) BS02 dna ? GO:0000786 ... P62799 37615563
    853412 8pc6:G (3.04) BS01 dna ? GO:0000786 ... P06897 37615563
    853413 8pc6:G (3.04) BS02 dna ? GO:0000786 ... P06897 37615563
    853414 8pc6:H (3.04) BS01 dna ? GO:0000786 ... P02281 37615563
    853415 8pc6:H (3.04) BS02 dna ? GO:0000786 ... P02281 37615563
    853416 8pc6:K (3.04) BS01 dna ? GO:0000395 ... O75475 37615563
    853417 8pc6:L (3.04) BS01 dna ? GO:0000395 ... O75475 37615563
    853418 8pc7:A (2.4) BS01 ZK8 ? GO:0016787 ... A0A2K8JN75 37376994
    853419 8pc7:B (2.4) BS01 ZK8 ? GO:0016787 ... A0A2K8JN75 37376994
    853420 8pc7:C (2.4) BS01 ZK8 ? GO:0016787 ... A0A2K8JN75 37376994
    853421 8pc7:D (2.4) BS01 ZK8 ? GO:0016787 ... A0A2K8JN75 37376994
    853422 8pc8:A (1.24) BS01 MAV ? GO:0016829 ... A0A7I9C8Z1 N/A
    853423 8pc8:A (1.24) BS02 BEM ? GO:0016829 ... A0A7I9C8Z1 N/A
    853424 8pc8:A (1.24) BS03 LGU ? GO:0016829 ... A0A7I9C8Z1 N/A
    853425 8pc8:A (1.24) BS04 BEM ? GO:0016829 ... A0A7I9C8Z1 N/A
    853426 8pch:A (2.1) BS01 peptide 3.4.22.16 GO:0006508 ... O46427 9493267
    853427 8pcl:A (1.6) BS01 YCH N/A GO:0008800 ... A0A0H3H219 38969718
    853428 8pcm:A (1.84) BS01 YCH N/A GO:0008800 ... A0A0H3H219 38969718
    853429 8pcn:A (1.9) BS01 YCH N/A GO:0008800 ... A0A0H3H219 38969718
    853430 8pco:A (1.55) BS01 YCH N/A GO:0008800 ... A0A0H3H219 38969718
    853431 8pcp:A (1.76) BS01 YCH N/A GO:0008800 ... A0A0H3H219 38969718
    853432 8pcq:A (1.55) BS01 YCH N/A GO:0008800 ... A0A0H3H219 38969718
    853433 8pcr:A (1.7) BS01 YCH N/A GO:0008800 ... A0A0H3H219 38969718
    853434 8pcs:A (1.67) BS01 YCH N/A GO:0008800 ... A0A0H3H219 38969718
    853435 8pct:A (1.55) BS01 YCH N/A GO:0008800 ... A0A0H3H219 38969718
    853436 8pcu:A (1.5) BS01 YCH N/A GO:0008800 ... A0A0H3H219 38969718
    853437 8pcv:A (1.58) BS01 YCH N/A GO:0008800 ... A0A0H3H219 38969718
    853438 8pcx:A (1.14) BS01 LGU ? GO:0016829 ... A0A7I9C8Z1 N/A
    853439 8pcx:A (1.14) BS02 BEM ? GO:0016829 ... A0A7I9C8Z1 N/A
    853440 8pcx:A (1.14) BS03 MAV ? GO:0016829 ... A0A7I9C8Z1 N/A
    853441 8pcx:A (1.14) BS04 BEM ? GO:0016829 ... A0A7I9C8Z1 N/A
    853442 8pd1:A (1.87) BS01 YHU 2.3.1.179 GO:0004315 ... G3XDA2 N/A
    853443 8pd1:B (1.87) BS01 YHU 2.3.1.179 GO:0004315 ... G3XDA2 N/A
    853444 8pd6:A (1.3) BS01 YCB 2.3.2.27 N/A Q8NG06 38116426
    853445 8pd6:A (1.3) BS02 MG 2.3.2.27 N/A Q8NG06 38116426
    853446 8pd8:A (3.3) BS01 CMP ? GO:0006812 ... A3RL54 37880361
    853447 8pd8:B (3.3) BS01 CMP ? GO:0006812 ... A3RL54 37880361
    853448 8pd9:A (3.6) BS01 CMP ? GO:0006812 ... A3RL54 37880361
    853449 8pdc:A (2.4) BS01 MG N/A GO:0000160 ... G0SD89 38965424
    853450 8pdc:A (2.4) BS02 BEF N/A GO:0000160 ... G0SD89 38965424
    853451 8pdd:A (1.25) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    853452 8pdd:A (1.25) BS02 MG 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    853453 8pdd:B (1.25) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    853454 8pde:A (2.4) BS01 peptide ? GO:0000977 ... Q05BX2 38492719
    853455 8pde:A (2.4) BS02 dna ? GO:0000977 ... Q05BX2 38492719
    853456 8pde:A (2.4) BS03 dna ? GO:0000977 ... Q05BX2 38492719
    853457 8pde:B (2.4) BS01 peptide ? GO:0000977 ... Q05BX2 38492719
    853458 8pde:B (2.4) BS02 dna ? GO:0000977 ... Q05BX2 38492719
    853459 8pde:B (2.4) BS03 dna ? GO:0000977 ... Q05BX2 38492719
    853460 8pde:D (2.4) BS01 peptide ? GO:0000977 ... Q05BX2 38492719
    853461 8pde:D (2.4) BS02 dna ? GO:0000977 ... Q05BX2 38492719
    853462 8pde:D (2.4) BS03 dna ? GO:0000977 ... Q05BX2 38492719
    853463 8pde:E (2.4) BS01 peptide ? GO:0000977 ... Q05BX2 38492719
    853464 8pde:E (2.4) BS02 dna ? GO:0000977 ... Q05BX2 38492719
    853465 8pde:E (2.4) BS03 dna ? GO:0000977 ... Q05BX2 38492719
    853466 8pdf:A (1.2) BS01 Y5Q 5.2.1.8 GO:0003007 ... P62942 37942685
    853467 8pdg:AAA (1.4) BS01 YBP 3.1.3.36
    3.1.3.56
    3.1.3.86
    GO:0016791 ... Q92835 38309262
    853468 8pdh:AAA (1.45) BS01 YBU 3.1.3.36
    3.1.3.56
    3.1.3.86
    GO:0016791 ... Q92835 38309262
    853469 8pdi:A (1.3) BS01 YBZ 3.1.3.36
    3.1.3.56
    3.1.3.86
    GO:0016791 ... Q92835 38309262
    853470 8pdj:AAA (1.4) BS01 YC5 3.1.3.36
    3.1.3.56
    3.1.3.86
    GO:0016791 ... Q92835 38309262
    853471 8pdk:A (2.0) BS01 C2E N/A N/A Q5SLC9 39615687
    853472 8pdk:B (2.0) BS01 C2E N/A N/A Q5SLC9 39615687
    853473 8pdl:A (3.1) BS01 rna ? GO:0003723 ... Q6WBA1 37993464
    853474 8pdm:A (3.3) BS01 rna ? GO:0003723 ... Q6WBA1 37993464
    853475 8pdn:A (4.7) BS01 rna ? GO:0003723 ... Q6WBA1 37993464
    853476 8pdn:A (4.7) BS02 rna ? GO:0003723 ... Q6WBA1 37993464
    853477 8pdn:B (4.7) BS01 rna ? GO:0003723 ... Q6WBA1 37993464
    853478 8pdn:B (4.7) BS02 rna ? GO:0003723 ... Q6WBA1 37993464
    853479 8pdn:C (4.7) BS01 rna ? GO:0003723 ... Q6WBA1 37993464
    853480 8pdn:C (4.7) BS02 rna ? GO:0003723 ... Q6WBA1 37993464
    853481 8pdn:D (4.7) BS01 rna ? GO:0003723 ... Q6WBA1 37993464
    853482 8pdn:D (4.7) BS02 rna ? GO:0003723 ... Q6WBA1 37993464
    853483 8pdn:E (4.7) BS01 rna ? GO:0003723 ... Q6WBA1 37993464
    853484 8pdn:E (4.7) BS02 rna ? GO:0003723 ... Q6WBA1 37993464
    853485 8pdn:F (4.7) BS01 rna ? GO:0003723 ... Q6WBA1 37993464
    853486 8pdn:F (4.7) BS02 rna ? GO:0003723 ... Q6WBA1 37993464
    853487 8pdn:G (4.7) BS01 rna ? GO:0003723 ... Q6WBA1 37993464
    853488 8pdn:G (4.7) BS02 rna ? GO:0003723 ... Q6WBA1 37993464
    853489 8pdn:H (4.7) BS01 rna ? GO:0003723 ... Q6WBA1 37993464
    853490 8pdn:H (4.7) BS02 rna ? GO:0003723 ... Q6WBA1 37993464
    853491 8pdn:I (4.7) BS01 rna ? GO:0003723 ... Q6WBA1 37993464
    853492 8pdn:I (4.7) BS02 rna ? GO:0003723 ... Q6WBA1 37993464
    853493 8pdn:J (4.7) BS01 rna ? GO:0003723 ... Q6WBA1 37993464
    853494 8pdn:J (4.7) BS02 rna ? GO:0003723 ... Q6WBA1 37993464
    853495 8pdn:K (4.7) BS01 rna ? GO:0003723 ... Q6WBA1 37993464
    853496 8pdn:K (4.7) BS02 rna ? GO:0003723 ... Q6WBA1 37993464
    853497 8pdn:L (4.7) BS01 rna ? GO:0003723 ... Q6WBA1 37993464
    853498 8pdo:A (3.1) BS01 rna ? GO:0003723 ... Q6WBA1 37993464
    853499 8pdo:B (3.1) BS01 rna ? GO:0003723 ... Q6WBA1 37993464
    853500 8pdp:A (2.9) BS01 peptide ? GO:0003723 ... Q6WBA1 37993464
    853501 8pdp:A (2.9) BS02 rna ? GO:0003723 ... Q6WBA1 37993464
    853502 8pdq:A (3.1) BS01 peptide ? GO:0003723 ... Q6WBA1 37993464
    853503 8pdq:A (3.1) BS02 rna ? GO:0003723 ... Q6WBA1 37993464
    853504 8pdr:A (4.0) BS01 peptide ? GO:0003723 ... Q6WBA1 37993464
    853505 8pdr:A (4.0) BS02 rna ? GO:0003723 ... Q6WBA1 37993464
    853506 8pdr:A (4.0) BS03 rna ? GO:0003723 ... Q6WBA1 37993464
    853507 8pdr:B (4.0) BS01 peptide ? GO:0003723 ... Q6WBA1 37993464
    853508 8pdr:B (4.0) BS02 rna ? GO:0003723 ... Q6WBA1 37993464
    853509 8pdr:B (4.0) BS03 rna ? GO:0003723 ... Q6WBA1 37993464
    853510 8pdr:C (4.0) BS01 peptide ? GO:0003723 ... Q6WBA1 37993464
    853511 8pdr:C (4.0) BS02 rna ? GO:0003723 ... Q6WBA1 37993464
    853512 8pdr:C (4.0) BS03 rna ? GO:0003723 ... Q6WBA1 37993464
    853513 8pdr:D (4.0) BS01 peptide ? GO:0003723 ... Q6WBA1 37993464
    853514 8pdr:D (4.0) BS02 rna ? GO:0003723 ... Q6WBA1 37993464
    853515 8pdr:D (4.0) BS03 rna ? GO:0003723 ... Q6WBA1 37993464
    853516 8pdr:E (4.0) BS01 peptide ? GO:0003723 ... Q6WBA1 37993464
    853517 8pdr:E (4.0) BS02 rna ? GO:0003723 ... Q6WBA1 37993464
    853518 8pdr:E (4.0) BS03 rna ? GO:0003723 ... Q6WBA1 37993464
    853519 8pdr:F (4.0) BS01 peptide ? GO:0003723 ... Q6WBA1 37993464
    853520 8pdr:F (4.0) BS02 rna ? GO:0003723 ... Q6WBA1 37993464
    853521 8pdr:F (4.0) BS03 rna ? GO:0003723 ... Q6WBA1 37993464
    853522 8pdr:G (4.0) BS01 peptide ? GO:0003723 ... Q6WBA1 37993464
    853523 8pdr:G (4.0) BS02 rna ? GO:0003723 ... Q6WBA1 37993464
    853524 8pdr:G (4.0) BS03 rna ? GO:0003723 ... Q6WBA1 37993464
    853525 8pdr:H (4.0) BS01 peptide ? GO:0003723 ... Q6WBA1 37993464
    853526 8pdr:H (4.0) BS02 rna ? GO:0003723 ... Q6WBA1 37993464
    853527 8pdr:H (4.0) BS03 rna ? GO:0003723 ... Q6WBA1 37993464
    853528 8pdr:I (4.0) BS01 peptide ? GO:0003723 ... Q6WBA1 37993464
    853529 8pdr:I (4.0) BS02 rna ? GO:0003723 ... Q6WBA1 37993464
    853530 8pdr:I (4.0) BS03 rna ? GO:0003723 ... Q6WBA1 37993464
    853531 8pdr:J (4.0) BS01 peptide ? GO:0003723 ... Q6WBA1 37993464
    853532 8pdr:J (4.0) BS02 rna ? GO:0003723 ... Q6WBA1 37993464
    853533 8pdr:J (4.0) BS03 rna ? GO:0003723 ... Q6WBA1 37993464
    853534 8pdr:K (4.0) BS01 peptide ? GO:0003723 ... Q6WBA1 37993464
    853535 8pdr:K (4.0) BS02 rna ? GO:0003723 ... Q6WBA1 37993464
    853536 8pds:A (2.9) BS01 rna ? GO:0003723 ... Q6WBA1 37993464
    853537 8pds:A (2.9) BS02 peptide ? GO:0003723 ... Q6WBA1 37993464
    853538 8pds:C (2.9) BS01 rna ? GO:0003723 ... Q6WBA1 37993464
    853539 8pds:C (2.9) BS02 peptide ? GO:0003723 ... Q6WBA1 37993464
    853540 8pdt:A (1.09) BS01 MAV ? GO:0016829 ... A0A7I9C8Z1 N/A
    853541 8pdt:A (1.09) BS02 LGU ? GO:0016829 ... A0A7I9C8Z1 N/A
    853542 8pdt:A (1.09) BS03 BEM ? GO:0016829 ... A0A7I9C8Z1 N/A
    853543 8pdu:A (3.22) BS01 PCG ? GO:0006812 ... A3RL54 37880361
    853544 8pdu:B (3.22) BS01 PCG ? GO:0006812 ... A3RL54 37880361
    853545 8pdv:A (3.26) BS01 PCG ? GO:0006812 ... A3RL54 37880361
    853546 8pdy:I (2.8) BS01 rna 2.7.7.6 GO:0000345 ... P0A8V2 38589445
    853547 8pdy:I (2.8) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 38589445
    853548 8pdy:I (2.8) BS03 dna 2.7.7.6 GO:0000345 ... P0A8V2 38589445
    853549 8pdy:J (2.8) BS01 rna 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    853550 8pdy:J (2.8) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    853551 8pdy:J (2.8) BS03 dna 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    853552 8pdy:J (2.8) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    853553 8pdy:J (2.8) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    853554 8pdy:J (2.8) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    853555 8pe0:A (1.9) BS01 C2E N/A N/A Q5SLC9 39615687
    853556 8pe0:B (1.9) BS01 C2E N/A N/A Q5SLC9 39615687
    853557 8pe1:A (1.9) BS01 MAN N/A N/A P0C956 38856634
    853558 8pe1:A (1.9) BS02 MAN N/A N/A P0C956 38856634
    853559 8pe1:A (1.9) BS03 MAN N/A N/A P0C956 38856634
    853560 8pe1:A (1.9) BS04 MAN N/A N/A P0C956 38856634
    853561 8pe1:A (1.9) BS05 MAN N/A N/A P0C956 38856634
    853562 8pe1:A (1.9) BS06 MAN N/A N/A P0C956 38856634
    853563 8pe1:B (1.9) BS01 MAN N/A N/A P0C956 38856634
    853564 8pe1:B (1.9) BS02 MAN N/A N/A P0C956 38856634
    853565 8pe1:B (1.9) BS03 MAN N/A N/A P0C956 38856634
    853566 8pe1:B (1.9) BS04 MAN N/A N/A P0C956 38856634
    853567 8pe1:B (1.9) BS05 MAN N/A N/A P0C956 38856634
    853568 8pe2:A (2.05) BS01 MAN N/A N/A P0C956 38856634
    853569 8pe2:A (2.05) BS02 MAN N/A N/A P0C956 38856634
    853570 8pe2:A (2.05) BS03 MAN N/A N/A P0C956 38856634
    853571 8pe3:A (1.96) BS01 rna 3.1.-.- GO:0000166 ... A0A0A7HFE6 37747760
    853572 8pe3:A (1.96) BS02 rna 3.1.-.- GO:0000166 ... A0A0A7HFE6 37747760
    853573 8pe3:A (1.96) BS03 rna 3.1.-.- GO:0000166 ... A0A0A7HFE6 37747760
    853574 8pe3:B (1.96) BS01 rna 3.1.-.- GO:0000166 ... A0A0A7HFE6 37747760
    853575 8pe3:B (1.96) BS02 rna 3.1.-.- GO:0000166 ... A0A0A7HFE6 37747760
    853576 8pe3:B (1.96) BS03 rna 3.1.-.- GO:0000166 ... A0A0A7HFE6 37747760
    853577 8pe9:A (3.152) BS01 CA 2.7.10.1 N/A Q08345 37328286
    853578 8pec:A (2.66) BS01 CTJ 3.5.2.6 GO:0005886 ... Q6XEC0 38828429
    853579 8pec:C (2.66) BS01 CTJ 3.5.2.6 GO:0005886 ... Q6XEC0 38828429
    853580 8pec:D (2.66) BS01 CTJ 3.5.2.6 GO:0005886 ... Q6XEC0 38828429
    853581 8ped:A (1.1) BS01 LGU ? GO:0016829 ... A0A7I9C8Z1 N/A
    853582 8ped:A (1.1) BS02 BEM ? GO:0016829 ... A0A7I9C8Z1 N/A
    853583 8ped:A (1.1) BS03 MAV ? GO:0016829 ... A0A7I9C8Z1 N/A
    853584 8ped:A (1.1) BS04 BEM ? GO:0016829 ... A0A7I9C8Z1 N/A
    853585 8pee:A (3.8) BS01 JJI 7.6.2.1
    7.6.2.2
    GO:0001666 ... P21447 38259172
    853586 8pee:A (3.8) BS02 JIZ 7.6.2.1
    7.6.2.2
    GO:0001666 ... P21447 38259172
    853587 8pee:A (3.8) BS03 Y01 7.6.2.1
    7.6.2.2
    GO:0001666 ... P21447 38259172
    853588 8pee:A (3.8) BS04 Y01 7.6.2.1
    7.6.2.2
    GO:0001666 ... P21447 38259172
    853589 8pee:A (3.8) BS05 Y01 7.6.2.1
    7.6.2.2
    GO:0001666 ... P21447 38259172
    853590 8pee:A (3.8) BS06 Y01 7.6.2.1
    7.6.2.2
    GO:0001666 ... P21447 38259172
    853591 8pee:A (3.8) BS07 Y01 7.6.2.1
    7.6.2.2
    GO:0001666 ... P21447 38259172
    853592 8pef:A (1.28) BS01 peptide N/A N/A Q9BQI6 39360622
    853593 8peg:0 (3.3) BS01 rna ? GO:0002181 ... P0A7Q6 38409277
    853594 8peg:0 (3.3) BS02 ZN ? GO:0002181 ... P0A7Q6 38409277
    853595 8peg:1 (3.3) BS01 rna ? GO:0000027 ... P0A7M2 38409277
    853596 8peg:2 (3.3) BS01 rna ? GO:0000027 ... P0A7M6 38409277
    853597 8peg:3 (3.3) BS01 rna ? GO:0000027 ... P0AG51 38409277
    853598 8peg:3 (3.3) BS02 rna ? GO:0000027 ... P0AG51 38409277
    853599 8peg:4 (3.3) BS01 rna ? GO:0002181 ... P0A7M9 38409277
    853600 8peg:4 (3.3) BS02 ZN ? GO:0002181 ... P0A7M9 38409277

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).