SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    853601 8peg:5 (3.3) BS01 rna ? GO:0000027 ... P0A7N4 38409277
    853602 8peg:6 (3.3) BS01 rna ? GO:0002181 ... P0A7Q1 38409277
    853603 8peg:B (3.3) BS01 rna ? GO:0000028 ... P0A7V0 38409277
    853604 8peg:C (3.3) BS01 rna ? GO:0000028 ... P0A7V3 38409277
    853605 8peg:C (3.3) BS02 rna ? GO:0000028 ... P0A7V3 38409277
    853606 8peg:D (3.3) BS01 rna ? GO:0000028 ... P0A7V8 38409277
    853607 8peg:E (3.3) BS01 rna ? GO:0000028 ... P0A7W1 38409277
    853608 8peg:E (3.3) BS02 rna ? GO:0000028 ... P0A7W1 38409277
    853609 8peg:F (3.3) BS01 rna ? GO:0002181 ... P02358 38409277
    853610 8peg:G (3.3) BS01 rna ? GO:0000028 ... P02359 38409277
    853611 8peg:G (3.3) BS02 rna ? GO:0000028 ... P02359 38409277
    853612 8peg:H (3.3) BS01 rna ? GO:0000028 ... P0A7W7 38409277
    853613 8peg:I (3.3) BS01 rna ? GO:0000049 ... P0A7X3 38409277
    853614 8peg:I (3.3) BS02 rna ? GO:0000049 ... P0A7X3 38409277
    853615 8peg:J (3.3) BS01 rna ? GO:0000049 ... P0A7R5 38409277
    853616 8peg:K (3.3) BS01 rna ? GO:0002181 ... P0A7R9 38409277
    853617 8peg:L (3.3) BS01 rna ? GO:0000049 ... P0A7S3 38409277
    853618 8peg:M (3.3) BS01 rna ? GO:0000049 ... P0A7S9 38409277
    853619 8peg:M (3.3) BS02 rna ? GO:0000049 ... P0A7S9 38409277
    853620 8peg:N (3.3) BS01 rna ? GO:0000028 ... P0AG59 38409277
    853621 8peg:O (3.3) BS01 rna ? GO:0000028 ... P0ADZ4 38409277
    853622 8peg:O (3.3) BS02 rna ? GO:0000028 ... P0ADZ4 38409277
    853623 8peg:P (3.3) BS01 rna ? GO:0000028 ... P0A7T3 38409277
    853624 8peg:Q (3.3) BS01 rna ? GO:0000028 ... P0AG63 38409277
    853625 8peg:R (3.3) BS01 rna ? GO:0002181 ... P0A7T7 38409277
    853626 8peg:S (3.3) BS01 rna ? GO:0000028 ... P0A7U3 38409277
    853627 8peg:T (3.3) BS01 rna ? GO:0000028 ... P0A7U7 38409277
    853628 8peg:U (3.3) BS01 rna ? GO:0000028 ... P68679 38409277
    853629 8peg:U (3.3) BS02 rna ? GO:0000028 ... P68679 38409277
    853630 8peg:a (3.3) BS01 rna ? GO:0000027 ... P0A7L0 38409277
    853631 8peg:a (3.3) BS02 rna ? GO:0000027 ... P0A7L0 38409277
    853632 8peg:b (3.3) BS01 rna ? GO:0000027 ... P60422 38409277
    853633 8peg:b (3.3) BS02 rna ? GO:0000027 ... P60422 38409277
    853634 8peg:c (3.3) BS01 rna ? GO:0000027 ... P60438 38409277
    853635 8peg:d (3.3) BS01 rna ? GO:0001070 ... P60723 38409277
    853636 8peg:e (3.3) BS01 rna ? GO:0000027 ... P62399 38409277
    853637 8peg:e (3.3) BS02 rna ? GO:0000027 ... P62399 38409277
    853638 8peg:e (3.3) BS03 rna ? GO:0000027 ... P62399 38409277
    853639 8peg:f (3.3) BS01 rna ? GO:0000027 ... P0AG55 38409277
    853640 8peg:g (3.3) BS01 rna ? GO:0000027 ... P0A7N9 38409277
    853641 8peg:h (3.3) BS01 rna ? GO:0000027 ... P0ADY7 38409277
    853642 8peg:h (3.3) BS02 rna ? GO:0000027 ... P0ADY7 38409277
    853643 8peg:h (3.3) BS03 rna ? GO:0000027 ... P0ADY7 38409277
    853644 8peg:i (3.3) BS01 rna ? GO:0002181 ... P0A7R1 38409277
    853645 8peg:j (3.3) BS01 rna ? GO:0002181 ... P0A7J3 38409277
    853646 8peg:k (3.3) BS01 rna ? GO:0000027 ... P0A7J7 38409277
    853647 8peg:l (3.3) BS01 rna ? GO:0002181 ... P0A7P5 38409277
    853648 8peg:m (3.3) BS01 rna ? GO:0002181 ... P0AA10 38409277
    853649 8peg:n (3.3) BS01 rna ? GO:0002181 ... P0ADY3 38409277
    853650 8peg:n (3.3) BS02 rna ? GO:0002181 ... P0ADY3 38409277
    853651 8peg:o (3.3) BS01 rna ? GO:0002181 ... P02413 38409277
    853652 8peg:o (3.3) BS02 MG ? GO:0002181 ... P02413 38409277
    853653 8peg:q (3.3) BS01 rna ? GO:0000027 ... P0AG44 38409277
    853654 8peg:r (3.3) BS01 rna ? GO:0002181 ... P0C018 38409277
    853655 8peg:r (3.3) BS02 rna ? GO:0002181 ... P0C018 38409277
    853656 8peg:s (3.3) BS01 rna ? GO:0000027 ... P0A7K6 38409277
    853657 8peg:s (3.3) BS02 rna ? GO:0000027 ... P0A7K6 38409277
    853658 8peg:t (3.3) BS01 rna ? GO:0000027 ... P0A7L3 38409277
    853659 8peg:u (3.3) BS01 rna ? GO:0002181 ... P0AG48 38409277
    853660 8peg:v (3.3) BS01 rna ? GO:0002181 ... P61175 38409277
    853661 8peg:v (3.3) BS02 peptide ? GO:0002181 ... P61175 38409277
    853662 8peg:w (3.3) BS01 rna ? GO:0000027 ... P0ADZ0 38409277
    853663 8peg:x (3.3) BS01 rna ? GO:0000027 ... P60624 38409277
    853664 8peg:y (3.3) BS01 rna ? GO:0000027 ... P68919 38409277
    853665 8peg:y (3.3) BS02 rna ? GO:0000027 ... P68919 38409277
    853666 8peg:z (3.3) BS01 rna ? GO:0000027 ... P0A7L8 38409277
    853667 8peg:z (3.3) BS02 rna ? GO:0000027 ... P0A7L8 38409277
    853668 8pej:A (1.5) BS01 YGX 3.2.1.23 GO:0004565 ... B3PBE0 37724332
    853669 8pej:B (1.5) BS01 YGX 3.2.1.23 GO:0004565 ... B3PBE0 37724332
    853670 8pej:C (1.5) BS01 YGX 3.2.1.23 GO:0004565 ... B3PBE0 37724332
    853671 8pej:D (1.5) BS01 YGX 3.2.1.23 GO:0004565 ... B3PBE0 37724332
    853672 8pej:D (1.5) BS02 YGX 3.2.1.23 GO:0004565 ... B3PBE0 37724332
    853673 8pej:E (1.5) BS01 YGX 3.2.1.23 GO:0004565 ... B3PBE0 37724332
    853674 8pej:F (1.5) BS01 YGX 3.2.1.23 GO:0004565 ... B3PBE0 37724332
    853675 8pej:F (1.5) BS02 YGX 3.2.1.23 GO:0004565 ... B3PBE0 37724332
    853676 8pej:G (1.5) BS01 YGX 3.2.1.23 GO:0004565 ... B3PBE0 37724332
    853677 8pej:H (1.5) BS01 YGX 3.2.1.23 GO:0004565 ... B3PBE0 37724332
    853678 8pem:A (2.0) BS01 AT9 N/A GO:0004482 ... Q32ZE1 N/A
    853679 8pem:A (2.0) BS02 SAH N/A GO:0004482 ... Q32ZE1 N/A
    853680 8pen:I (3.1) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 38589445
    853681 8pen:I (3.1) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 38589445
    853682 8pen:I (3.1) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 38589445
    853683 8pen:J (3.1) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    853684 8pen:J (3.1) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    853685 8pen:J (3.1) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    853686 8pen:J (3.1) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    853687 8pen:J (3.1) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    853688 8pen:J (3.1) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    853689 8pen:P (3.1) BS01 dna ? GO:0001000 ... P0AFW0 38589445
    853690 8peo:A (2.69) BS01 dna ? GO:0000786 ... P84233 37615563
    853691 8peo:A (2.69) BS02 dna ? GO:0000786 ... P84233 37615563
    853692 8peo:A (2.69) BS03 M2L ? GO:0000786 ... P84233 37615563
    853693 8peo:B (2.69) BS01 dna ? GO:0000786 ... P62799 37615563
    853694 8peo:B (2.69) BS02 dna ? GO:0000786 ... P62799 37615563
    853695 8peo:C (2.69) BS01 dna ? GO:0000786 ... P06897 37615563
    853696 8peo:C (2.69) BS02 dna ? GO:0000786 ... P06897 37615563
    853697 8peo:D (2.69) BS01 dna ? GO:0000786 ... P02281 37615563
    853698 8peo:D (2.69) BS02 dna ? GO:0000786 ... P02281 37615563
    853699 8peo:E (2.69) BS01 dna ? GO:0000786 ... P84233 37615563
    853700 8peo:E (2.69) BS02 dna ? GO:0000786 ... P84233 37615563
    853701 8peo:F (2.69) BS01 dna ? GO:0000786 ... P62799 37615563
    853702 8peo:F (2.69) BS02 dna ? GO:0000786 ... P62799 37615563
    853703 8peo:G (2.69) BS01 dna ? GO:0000786 ... P06897 37615563
    853704 8peo:G (2.69) BS02 dna ? GO:0000786 ... P06897 37615563
    853705 8peo:H (2.69) BS01 dna ? GO:0000786 ... P02281 37615563
    853706 8peo:H (2.69) BS02 dna ? GO:0000786 ... P02281 37615563
    853707 8peo:K (2.69) BS01 dna ? GO:0000395 ... O75475 37615563
    853708 8peo:K (2.69) BS02 M2L ? GO:0000395 ... O75475 37615563
    853709 8pep:A (3.33) BS01 dna ? GO:0000786 ... P84233 37615563
    853710 8pep:A (3.33) BS02 dna ? GO:0000786 ... P84233 37615563
    853711 8pep:B (3.33) BS01 dna ? GO:0000786 ... P62799 37615563
    853712 8pep:B (3.33) BS02 dna ? GO:0000786 ... P62799 37615563
    853713 8pep:C (3.33) BS01 dna ? GO:0000786 ... P06897 37615563
    853714 8pep:C (3.33) BS02 dna ? GO:0000786 ... P06897 37615563
    853715 8pep:D (3.33) BS01 dna ? GO:0000786 ... P02281 37615563
    853716 8pep:D (3.33) BS02 dna ? GO:0000786 ... P02281 37615563
    853717 8pep:E (3.33) BS01 dna ? GO:0000786 ... P84233 37615563
    853718 8pep:E (3.33) BS02 dna ? GO:0000786 ... P84233 37615563
    853719 8pep:F (3.33) BS01 dna ? GO:0000786 ... P62799 37615563
    853720 8pep:F (3.33) BS02 dna ? GO:0000786 ... P62799 37615563
    853721 8pep:G (3.33) BS01 dna ? GO:0000786 ... P06897 37615563
    853722 8pep:G (3.33) BS02 dna ? GO:0000786 ... P06897 37615563
    853723 8pep:H (3.33) BS01 dna ? GO:0000786 ... P02281 37615563
    853724 8pep:H (3.33) BS02 dna ? GO:0000786 ... P02281 37615563
    853725 8pep:K (3.33) BS01 dna ? GO:0000395 ... O75475 37615563
    853726 8pep:L (3.33) BS01 dna ? GO:0000395 ... O75475 37615563
    853727 8peu:A (3.7) BS01 AGS N/A GO:0003676 ... P0AG30 39788982
    853728 8peu:B (3.7) BS01 AGS N/A GO:0003676 ... P0AG30 39788982
    853729 8peu:B (3.7) BS02 AGS N/A GO:0003676 ... P0AG30 39788982
    853730 8peu:C (3.7) BS01 AGS N/A GO:0003676 ... P0AG30 39788982
    853731 8peu:D (3.7) BS01 AGS N/A GO:0003676 ... P0AG30 39788982
    853732 8peu:D (3.7) BS02 AGS N/A GO:0003676 ... P0AG30 39788982
    853733 8peu:E (3.7) BS01 AGS N/A GO:0003676 ... P0AG30 39788982
    853734 8peu:E (3.7) BS02 AGS N/A GO:0003676 ... P0AG30 39788982
    853735 8peu:F (3.7) BS01 AGS N/A GO:0003676 ... P0AG30 39788982
    853736 8peu:I (3.7) BS01 AGS N/A GO:0003676 ... P0AG30 39788982
    853737 8peu:J (3.7) BS01 AGS N/A GO:0003676 ... P0AG30 39788982
    853738 8peu:J (3.7) BS02 AGS N/A GO:0003676 ... P0AG30 39788982
    853739 8peu:K (3.7) BS01 AGS N/A GO:0003676 ... P0AG30 39788982
    853740 8peu:K (3.7) BS02 AGS N/A GO:0003676 ... P0AG30 39788982
    853741 8peu:L (3.7) BS01 AGS N/A GO:0003676 ... P0AG30 39788982
    853742 8peu:L (3.7) BS02 AGS N/A GO:0003676 ... P0AG30 39788982
    853743 8peu:M (3.7) BS01 AGS N/A GO:0003676 ... P0AG30 39788982
    853744 8peu:M (3.7) BS02 MG N/A GO:0003676 ... P0AG30 39788982
    853745 8pew:A (4.3) BS01 AGS N/A GO:0003676 ... P0AG30 39788982
    853746 8pew:B (4.3) BS01 AGS N/A GO:0003676 ... P0AG30 39788982
    853747 8pew:B (4.3) BS02 AGS N/A GO:0003676 ... P0AG30 39788982
    853748 8pew:C (4.3) BS01 AGS N/A GO:0003676 ... P0AG30 39788982
    853749 8pew:C (4.3) BS02 AGS N/A GO:0003676 ... P0AG30 39788982
    853750 8pew:D (4.3) BS01 AGS N/A GO:0003676 ... P0AG30 39788982
    853751 8pew:E (4.3) BS01 AGS N/A GO:0003676 ... P0AG30 39788982
    853752 8pew:E (4.3) BS02 AGS N/A GO:0003676 ... P0AG30 39788982
    853753 8pew:F (4.3) BS01 AGS N/A GO:0003676 ... P0AG30 39788982
    853754 8pew:F (4.3) BS02 AGS N/A GO:0003676 ... P0AG30 39788982
    853755 8pew:G (4.3) BS01 AGS N/A GO:0003676 ... P0AG30 39788982
    853756 8pew:H (4.3) BS01 AGS N/A GO:0003676 ... P0AG30 39788982
    853757 8pew:I (4.3) BS01 AGS N/A GO:0003676 ... P0AG30 39788982
    853758 8pew:J (4.3) BS01 AGS N/A GO:0003676 ... P0AG30 39788982
    853759 8pew:J (4.3) BS02 AGS N/A GO:0003676 ... P0AG30 39788982
    853760 8pew:K (4.3) BS01 AGS N/A GO:0003676 ... P0AG30 39788982
    853761 8pew:K (4.3) BS02 MG N/A GO:0003676 ... P0AG30 39788982
    853762 8pew:L (4.3) BS01 AGS N/A GO:0003676 ... P0AG30 39788982
    853763 8pew:L (4.3) BS02 AGS N/A GO:0003676 ... P0AG30 39788982
    853764 8pew:L (4.3) BS03 MG N/A GO:0003676 ... P0AG30 39788982
    853765 8pew:M (4.3) BS01 AGS N/A GO:0003676 ... P0AG30 39788982
    853766 8pew:M (4.3) BS02 AGS N/A GO:0003676 ... P0AG30 39788982
    853767 8pew:N (4.3) BS01 AGS N/A GO:0003676 ... P0AG30 39788982
    853768 8pew:N (4.3) BS02 AGS N/A GO:0003676 ... P0AG30 39788982
    853769 8pew:O (4.3) BS01 AGS N/A GO:0003676 ... P0AG30 39788982
    853770 8pew:P (4.3) BS01 AGS N/A GO:0003676 ... P0AG30 39788982
    853771 8pew:p (4.3) BS01 AGS N/A GO:1990216 ... P05460 39788982
    853772 8pex:A (3.1) BS01 AGS N/A GO:0003676 ... P0AG30 39788982
    853773 8pex:A (3.1) BS02 MG N/A GO:0003676 ... P0AG30 39788982
    853774 8pex:B (3.1) BS01 AGS N/A GO:0003676 ... P0AG30 39788982
    853775 8pex:C (3.1) BS01 AGS N/A GO:0003676 ... P0AG30 39788982
    853776 8pex:C (3.1) BS02 AGS N/A GO:0003676 ... P0AG30 39788982
    853777 8pex:D (3.1) BS01 AGS N/A GO:0003676 ... P0AG30 39788982
    853778 8pex:E (3.1) BS01 AGS N/A GO:0003676 ... P0AG30 39788982
    853779 8pex:E (3.1) BS02 AGS N/A GO:0003676 ... P0AG30 39788982
    853780 8pex:F (3.1) BS01 AGS N/A GO:0003676 ... P0AG30 39788982
    853781 8pex:I (3.1) BS01 AGS N/A GO:0003676 ... P0AG30 39788982
    853782 8pex:J (3.1) BS01 AGS N/A GO:0003676 ... P0AG30 39788982
    853783 8pex:J (3.1) BS02 AGS N/A GO:0003676 ... P0AG30 39788982
    853784 8pex:K (3.1) BS01 AGS N/A GO:0003676 ... P0AG30 39788982
    853785 8pex:K (3.1) BS02 AGS N/A GO:0003676 ... P0AG30 39788982
    853786 8pex:L (3.1) BS01 AGS N/A GO:0003676 ... P0AG30 39788982
    853787 8pex:L (3.1) BS02 AGS N/A GO:0003676 ... P0AG30 39788982
    853788 8pex:M (3.1) BS01 AGS N/A GO:0003676 ... P0AG30 39788982
    853789 8pex:N (3.1) BS01 AGS N/A GO:0003676 ... P0AG30 39788982
    853790 8pex:N (3.1) BS02 MG N/A GO:0003676 ... P0AG30 39788982
    853791 8pey:A (3.0) BS01 AGS N/A GO:0003676 ... P0AG30 39788982
    853792 8pey:B (3.0) BS01 AGS N/A GO:0003676 ... P0AG30 39788982
    853793 8pey:C (3.0) BS01 AGS N/A GO:0003676 ... P0AG30 39788982
    853794 8pey:D (3.0) BS01 AGS N/A GO:0003676 ... P0AG30 39788982
    853795 8pey:E (3.0) BS01 AGS N/A GO:0003676 ... P0AG30 39788982
    853796 8pey:F (3.0) BS01 AGS N/A GO:0003676 ... P0AG30 39788982
    853797 8pey:F (3.0) BS02 AGS N/A GO:0003676 ... P0AG30 39788982
    853798 8pey:G (3.0) BS01 AGS N/A GO:0003676 ... P0AG30 39788982
    853799 8pey:G (3.0) BS02 AGS N/A GO:0003676 ... P0AG30 39788982
    853800 8pey:I (3.0) BS01 AGS N/A GO:0003676 ... P0AG30 39788982

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).