SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    853801 8oz0:O (3.5) BS01 rna ? GO:0002181 ... P15880 38287194
    853802 8oz0:P (3.5) BS01 rna ? GO:0002181 ... P61247 38287194
    853803 8oz0:Q (3.5) BS01 rna ? GO:0000028 ... P08865 38287194
    853804 8oz0:R (3.5) BS01 rna ? GO:0002181 ... P62854 38287194
    853805 8oz0:R (3.5) BS02 rna ? GO:0002181 ... P62854 38287194
    853806 8oz0:R (3.5) BS03 ZN ? GO:0002181 ... P62854 38287194
    853807 8oz0:S (3.5) BS01 rna ? GO:0002181 ... P62753 38287194
    853808 8oz0:T (3.5) BS01 rna ? GO:0000028 ... P62263 38287194
    853809 8oz0:U (3.5) BS01 rna ? GO:0001731 ... P20042 38287194
    853810 8oz0:V (3.5) BS01 rna ? GO:0000462 ... P62277 38287194
    853811 8oz0:X (3.5) BS01 rna ? GO:0002181 ... P62280 38287194
    853812 8oz0:Y (3.5) BS01 rna ? GO:0002181 ... P62701 38287194
    853813 8oz0:Z (3.5) BS01 rna ? GO:0002181 ... P46781 38287194
    853814 8oz0:a (3.5) BS01 rna ? GO:0002181 ... P62266 38287194
    853815 8oz0:b (3.5) BS01 rna ? GO:0003735 ... P62861 38287194
    853816 8oz0:c (3.5) BS01 rna ? GO:0002181 ... P62244 38287194
    853817 8oz0:d (3.5) BS01 rna ? GO:0002181 ... P62241 38287194
    853818 8oz0:e (3.5) BS01 rna ? GO:0002181 ... P62847 38287194
    853819 8oz0:f (3.5) BS01 rna ? GO:0002181 ... P46782 38287194
    853820 8oz0:f (3.5) BS02 MG ? GO:0002181 ... P46782 38287194
    853821 8oz0:g (3.5) BS01 rna ? GO:0000462 ... P62249 38287194
    853822 8oz0:h (3.5) BS01 rna 4.2.99.18 GO:0001228 ... P23396 38287194
    853823 8oz0:h (3.5) BS02 rna 4.2.99.18 GO:0001228 ... P23396 38287194
    853824 8oz0:i (3.5) BS01 rna ? GO:0002181 ... P46783 38287194
    853825 8oz0:j (3.5) BS01 rna ? GO:0000056 ... P62841 38287194
    853826 8oz0:k (3.5) BS01 rna ? GO:0001891 ... P63244 38287194
    853827 8oz0:l (3.5) BS01 rna ? GO:0000028 ... P39019 38287194
    853828 8oz0:m (3.5) BS01 rna ? GO:0002181 ... P62851 38287194
    853829 8oz0:n (3.5) BS01 rna ? GO:0002181 ... P62269 38287194
    853830 8oz0:o (3.5) BS01 rna ? GO:0002181 ... P62273 38287194
    853831 8oz0:p (3.5) BS01 rna ? GO:0002181 ... P62979 38287194
    853832 8oz0:p (3.5) BS02 ZN ? GO:0002181 ... P62979 38287194
    853833 8oz0:q (3.5) BS01 rna ? GO:0002181 ... P25398 38287194
    853834 8oz0:s (3.5) BS01 rna ? GO:0000028 ... P62857 38287194
    853835 8oz0:v (3.5) BS01 rna ? GO:0002181 ... P08708 38287194
    853836 8oz0:w (3.5) BS01 rna ? GO:0002181 ... P60866 38287194
    853837 8oz1:A (1.3) BS01 RBH 3.2.1.4 GO:0000272 ... B3PD52 38161374
    853838 8oz1:A (1.3) BS02 YLL 3.2.1.4 GO:0000272 ... B3PD52 38161374
    853839 8oz2:A (1.04) BS01 NAP 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P15121 N/A
    853840 8oz2:A (1.04) BS02 30L 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P15121 N/A
    853841 8oz5:A (2.04) BS01 BYN N/A GO:0005737 ... A0A193DUB4 N/A
    853842 8oz5:A (2.04) BS02 WC8 N/A GO:0005737 ... A0A193DUB4 N/A
    853843 8oz5:A (2.04) BS03 FE N/A GO:0005737 ... A0A193DUB4 N/A
    853844 8oz5:A (2.04) BS04 FE N/A GO:0005737 ... A0A193DUB4 N/A
    853845 8oz5:A (2.04) BS05 CA N/A GO:0005737 ... A0A193DUB4 N/A
    853846 8oz5:B (2.04) BS01 BYN N/A GO:0005737 ... A0A193DUB4 N/A
    853847 8oz5:B (2.04) BS02 WC8 N/A GO:0005737 ... A0A193DUB4 N/A
    853848 8oz5:B (2.04) BS03 FE N/A GO:0005737 ... A0A193DUB4 N/A
    853849 8oz5:B (2.04) BS04 FE N/A GO:0005737 ... A0A193DUB4 N/A
    853850 8oz5:B (2.04) BS05 CA N/A GO:0005737 ... A0A193DUB4 N/A
    853851 8oz5:C (2.04) BS01 BYN N/A GO:0005737 ... A0A193DUB4 N/A
    853852 8oz5:C (2.04) BS02 WC8 N/A GO:0005737 ... A0A193DUB4 N/A
    853853 8oz5:C (2.04) BS03 FE N/A GO:0005737 ... A0A193DUB4 N/A
    853854 8oz5:C (2.04) BS04 FE N/A GO:0005737 ... A0A193DUB4 N/A
    853855 8oz5:C (2.04) BS05 CA N/A GO:0005737 ... A0A193DUB4 N/A
    853856 8oz5:D (2.04) BS01 BYN N/A GO:0005737 ... A0A193DUB4 N/A
    853857 8oz5:D (2.04) BS02 WC8 N/A GO:0005737 ... A0A193DUB4 N/A
    853858 8oz5:D (2.04) BS03 FE N/A GO:0005737 ... A0A193DUB4 N/A
    853859 8oz5:D (2.04) BS04 FE N/A GO:0005737 ... A0A193DUB4 N/A
    853860 8oz5:D (2.04) BS05 CA N/A GO:0005737 ... A0A193DUB4 N/A
    853861 8oz5:E (2.04) BS01 BYN N/A GO:0005737 ... A0A193DUB4 N/A
    853862 8oz5:E (2.04) BS02 WC8 N/A GO:0005737 ... A0A193DUB4 N/A
    853863 8oz5:E (2.04) BS03 FE N/A GO:0005737 ... A0A193DUB4 N/A
    853864 8oz5:E (2.04) BS04 FE N/A GO:0005737 ... A0A193DUB4 N/A
    853865 8oz5:E (2.04) BS05 CA N/A GO:0005737 ... A0A193DUB4 N/A
    853866 8oz5:F (2.04) BS01 BYN N/A GO:0005737 ... A0A193DUB4 N/A
    853867 8oz5:F (2.04) BS02 WC8 N/A GO:0005737 ... A0A193DUB4 N/A
    853868 8oz5:F (2.04) BS03 FE N/A GO:0005737 ... A0A193DUB4 N/A
    853869 8oz5:F (2.04) BS04 FE N/A GO:0005737 ... A0A193DUB4 N/A
    853870 8oz5:F (2.04) BS05 CA N/A GO:0005737 ... A0A193DUB4 N/A
    853871 8oz6:A (3.97) BS01 rna ? GO:0007165 ... A0A316E683 37467330
    853872 8oz6:A (3.97) BS02 dna ? GO:0007165 ... A0A316E683 37467330
    853873 8oz6:B (3.97) BS01 rna ? GO:0003676 ... A0A316E3U6 37467330
    853874 8oz6:B (3.97) BS02 dna ? GO:0003676 ... A0A316E3U6 37467330
    853875 8oz6:C (3.97) BS01 rna ? GO:0007165 ... A0A316E683 37467330
    853876 8oz6:C (3.97) BS02 dna ? GO:0007165 ... A0A316E683 37467330
    853877 8oz6:D (3.97) BS01 rna ? GO:0003676 ... A0A316E3U6 37467330
    853878 8oz6:D (3.97) BS02 dna ? GO:0003676 ... A0A316E3U6 37467330
    853879 8oz6:E (3.97) BS01 rna ? GO:0007165 ... A0A316E683 37467330
    853880 8oz6:E (3.97) BS02 dna ? GO:0007165 ... A0A316E683 37467330
    853881 8oz6:F (3.97) BS01 rna ? GO:0003676 ... A0A316E3U6 37467330
    853882 8oz6:F (3.97) BS02 dna ? GO:0003676 ... A0A316E3U6 37467330
    853883 8oz6:G (3.97) BS01 rna ? GO:0007165 ... A0A316E683 37467330
    853884 8oz6:G (3.97) BS02 dna ? GO:0007165 ... A0A316E683 37467330
    853885 8oz6:H (3.97) BS01 rna ? GO:0003676 ... A0A316E3U6 37467330
    853886 8oz6:H (3.97) BS02 dna ? GO:0003676 ... A0A316E3U6 37467330
    853887 8oz7:A (2.75) BS01 dna ? N/A Q48596 38587192
    853888 8oz7:B (2.75) BS01 dna ? N/A Q48596 38587192
    853889 8oz7:C (2.75) BS01 dna ? N/A Q48596 38587192
    853890 8oz7:D (2.75) BS01 dna ? N/A Q48596 38587192
    853891 8oz8:A (1.85) BS01 NM2 4.1.2.10 GO:0046593 ... E8WYN5 N/A
    853892 8oz8:A (1.85) BS02 MN 4.1.2.10 GO:0046593 ... E8WYN5 N/A
    853893 8oz8:B (1.85) BS01 NM2 4.1.2.10 GO:0046593 ... E8WYN5 N/A
    853894 8oz8:B (1.85) BS02 MN 4.1.2.10 GO:0046593 ... E8WYN5 N/A
    853895 8oz8:C (1.85) BS01 NM2 4.1.2.10 GO:0046593 ... E8WYN5 N/A
    853896 8oz8:C (1.85) BS02 MN 4.1.2.10 GO:0046593 ... E8WYN5 N/A
    853897 8oz8:D (1.85) BS01 NM2 4.1.2.10 GO:0046593 ... E8WYN5 N/A
    853898 8oz8:D (1.85) BS02 MN 4.1.2.10 GO:0046593 ... E8WYN5 N/A
    853899 8oz9:A (1.4) BS01 W6E 2.7.13.3 GO:0016310 ... Q56310 N/A
    853900 8oz9:B (1.4) BS01 W6E 2.7.13.3 GO:0016310 ... Q56310 N/A
    853901 8oza:A (1.8) BS01 WRH 3.4.22.15 GO:0006508 ... P07711 38630165
    853902 8oza:B (1.8) BS01 WRH 3.4.22.15 GO:0006508 ... P07711 38630165
    853903 8oza:C (1.8) BS01 WRH 3.4.22.15 GO:0006508 ... P07711 38630165
    853904 8oza:D (1.8) BS01 WRH 3.4.22.15 GO:0006508 ... P07711 38630165
    853905 8ozd:A (3.89) BS01 rna ? GO:0007165 ... A0A316E683 37467330
    853906 8ozd:A (3.89) BS02 dna ? GO:0007165 ... A0A316E683 37467330
    853907 8ozd:B (3.89) BS01 rna ? GO:0003676 ... A0A316E3U6 37467330
    853908 8ozd:B (3.89) BS02 dna ? GO:0003676 ... A0A316E3U6 37467330
    853909 8ozd:C (3.89) BS01 rna ? GO:0007165 ... A0A316E683 37467330
    853910 8ozd:C (3.89) BS02 dna ? GO:0007165 ... A0A316E683 37467330
    853911 8ozd:D (3.89) BS01 rna ? GO:0003676 ... A0A316E3U6 37467330
    853912 8ozd:D (3.89) BS02 dna ? GO:0003676 ... A0A316E3U6 37467330
    853913 8oze:E (2.91) BS01 rna ? GO:0007165 ... A0A316E683 37467330
    853914 8oze:E (2.91) BS02 dna ? GO:0007165 ... A0A316E683 37467330
    853915 8oze:F (2.91) BS01 rna ? GO:0003676 ... A0A316E3U6 37467330
    853916 8oze:F (2.91) BS02 dna ? GO:0003676 ... A0A316E3U6 37467330
    853917 8oze:G (2.91) BS01 rna ? GO:0007165 ... A0A316E683 37467330
    853918 8oze:G (2.91) BS02 dna ? GO:0007165 ... A0A316E683 37467330
    853919 8oze:H (2.91) BS01 rna ? GO:0003676 ... A0A316E3U6 37467330
    853920 8oze:H (2.91) BS02 dna ? GO:0003676 ... A0A316E3U6 37467330
    853921 8ozf:A (3.73) BS01 rna ? GO:0007165 ... A0A316E683 37467330
    853922 8ozf:A (3.73) BS02 dna ? GO:0007165 ... A0A316E683 37467330
    853923 8ozf:A (3.73) BS03 AR6 ? GO:0007165 ... A0A316E683 37467330
    853924 8ozf:B (3.73) BS01 rna ? GO:0003676 ... A0A316E3U6 37467330
    853925 8ozf:B (3.73) BS02 dna ? GO:0003676 ... A0A316E3U6 37467330
    853926 8ozf:C (3.73) BS01 rna ? GO:0007165 ... A0A316E683 37467330
    853927 8ozf:C (3.73) BS02 dna ? GO:0007165 ... A0A316E683 37467330
    853928 8ozf:C (3.73) BS03 AR6 ? GO:0007165 ... A0A316E683 37467330
    853929 8ozf:E (3.73) BS01 rna ? GO:0003676 ... A0A316E3U6 37467330
    853930 8ozf:E (3.73) BS02 dna ? GO:0003676 ... A0A316E3U6 37467330
    853931 8ozf:F (3.73) BS01 rna ? GO:0007165 ... A0A316E683 37467330
    853932 8ozf:F (3.73) BS02 dna ? GO:0007165 ... A0A316E683 37467330
    853933 8ozf:F (3.73) BS03 AR6 ? GO:0007165 ... A0A316E683 37467330
    853934 8ozf:G (3.73) BS01 rna ? GO:0003676 ... A0A316E3U6 37467330
    853935 8ozf:G (3.73) BS02 dna ? GO:0003676 ... A0A316E3U6 37467330
    853936 8ozf:H (3.73) BS01 rna ? GO:0007165 ... A0A316E683 37467330
    853937 8ozf:H (3.73) BS02 dna ? GO:0007165 ... A0A316E683 37467330
    853938 8ozf:H (3.73) BS03 AR6 ? GO:0007165 ... A0A316E683 37467330
    853939 8ozf:M (3.73) BS01 rna ? GO:0003676 ... A0A316E3U6 37467330
    853940 8ozf:M (3.73) BS02 dna ? GO:0003676 ... A0A316E3U6 37467330
    853941 8ozg:A (3.37) BS01 rna ? GO:0007165 ... A0A316E683 37467330
    853942 8ozg:A (3.37) BS02 dna ? GO:0007165 ... A0A316E683 37467330
    853943 8ozg:A (3.37) BS03 AR6 ? GO:0007165 ... A0A316E683 37467330
    853944 8ozg:B (3.37) BS01 rna ? GO:0003676 ... A0A316E3U6 37467330
    853945 8ozg:B (3.37) BS02 dna ? GO:0003676 ... A0A316E3U6 37467330
    853946 8ozg:C (3.37) BS01 rna ? GO:0007165 ... A0A316E683 37467330
    853947 8ozg:C (3.37) BS02 dna ? GO:0007165 ... A0A316E683 37467330
    853948 8ozg:C (3.37) BS03 AR6 ? GO:0007165 ... A0A316E683 37467330
    853949 8ozg:E (3.37) BS01 rna ? GO:0003676 ... A0A316E3U6 37467330
    853950 8ozg:E (3.37) BS02 dna ? GO:0003676 ... A0A316E3U6 37467330
    853951 8ozg:F (3.37) BS01 rna ? GO:0007165 ... A0A316E683 37467330
    853952 8ozg:F (3.37) BS02 dna ? GO:0007165 ... A0A316E683 37467330
    853953 8ozg:F (3.37) BS03 AR6 ? GO:0007165 ... A0A316E683 37467330
    853954 8ozg:G (3.37) BS01 rna ? GO:0003676 ... A0A316E3U6 37467330
    853955 8ozg:G (3.37) BS02 dna ? GO:0003676 ... A0A316E3U6 37467330
    853956 8ozg:H (3.37) BS01 rna ? GO:0007165 ... A0A316E683 37467330
    853957 8ozg:H (3.37) BS02 dna ? GO:0007165 ... A0A316E683 37467330
    853958 8ozg:H (3.37) BS03 AR6 ? GO:0007165 ... A0A316E683 37467330
    853959 8ozg:M (3.37) BS01 rna ? GO:0003676 ... A0A316E3U6 37467330
    853960 8ozg:M (3.37) BS02 dna ? GO:0003676 ... A0A316E3U6 37467330
    853961 8ozh:A (2.91) BS01 peptide N/A GO:0019031 ... A0A1Q1N9U9 39013471
    853962 8ozh:C (2.91) BS01 peptide N/A GO:0019031 ... A0A1Q1N9U9 39013471
    853963 8ozh:D (2.91) BS01 peptide N/A GO:0019031 ... A0A1Q1N9U9 39013471
    853964 8ozh:E (2.91) BS01 peptide N/A GO:0019031 ... A0A1Q1N9U9 39013471
    853965 8ozh:G (2.91) BS01 peptide N/A GO:0019031 ... A0A1Q1N9U9 39013471
    853966 8ozh:H (2.91) BS01 peptide N/A GO:0019031 ... A0A1Q1N9U9 39013471
    853967 8ozh:I (2.91) BS01 peptide N/A GO:0019031 ... A0A1Q1N9U9 39013471
    853968 8ozh:K (2.91) BS01 peptide N/A GO:0019031 ... A0A1Q1N9U9 39013471
    853969 8ozh:L (2.91) BS01 peptide N/A GO:0019031 ... A0A1Q1N9U9 39013471
    853970 8ozi:A (3.22) BS01 rna ? GO:0007165 ... A0A316E683 37467330
    853971 8ozi:A (3.22) BS02 dna ? GO:0007165 ... A0A316E683 37467330
    853972 8ozi:A (3.22) BS03 NAD ? GO:0007165 ... A0A316E683 37467330
    853973 8ozi:B (3.22) BS01 rna ? GO:0003676 ... A0A316E3U6 37467330
    853974 8ozi:B (3.22) BS02 dna ? GO:0003676 ... A0A316E3U6 37467330
    853975 8ozi:C (3.22) BS01 rna ? GO:0007165 ... A0A316E683 37467330
    853976 8ozi:C (3.22) BS02 dna ? GO:0007165 ... A0A316E683 37467330
    853977 8ozi:C (3.22) BS03 NAD ? GO:0007165 ... A0A316E683 37467330
    853978 8ozi:D (3.22) BS01 rna ? GO:0003676 ... A0A316E3U6 37467330
    853979 8ozi:D (3.22) BS02 dna ? GO:0003676 ... A0A316E3U6 37467330
    853980 8ozi:E (3.22) BS01 rna ? GO:0007165 ... A0A316E683 37467330
    853981 8ozi:E (3.22) BS02 dna ? GO:0007165 ... A0A316E683 37467330
    853982 8ozi:E (3.22) BS03 NAD ? GO:0007165 ... A0A316E683 37467330
    853983 8ozi:F (3.22) BS01 rna ? GO:0003676 ... A0A316E3U6 37467330
    853984 8ozi:F (3.22) BS02 dna ? GO:0003676 ... A0A316E3U6 37467330
    853985 8ozi:G (3.22) BS01 rna ? GO:0007165 ... A0A316E683 37467330
    853986 8ozi:G (3.22) BS02 dna ? GO:0007165 ... A0A316E683 37467330
    853987 8ozi:G (3.22) BS03 NAD ? GO:0007165 ... A0A316E683 37467330
    853988 8ozi:H (3.22) BS01 rna ? GO:0003676 ... A0A316E3U6 37467330
    853989 8ozi:H (3.22) BS02 dna ? GO:0003676 ... A0A316E3U6 37467330
    853990 8ozj:A (3.7) BS01 peptide N/A GO:0019031 ... A0A1Q1N9U9 39013471
    853991 8ozj:G (3.7) BS01 peptide N/A GO:0019031 ... A0A1Q1N9U9 39013471
    853992 8ozj:K (3.7) BS01 peptide N/A GO:0019031 ... A0A1Q1N9U9 39013471
    853993 8ozp:A (11.9) BS01 peptide N/A GO:0019031 ... A0A1Q1N9U9 39013471
    853994 8ozp:A (11.9) BS02 CLR N/A GO:0019031 ... A0A1Q1N9U9 39013471
    853995 8ozp:G (11.9) BS01 peptide N/A GO:0019031 ... A0A1Q1N9U9 39013471
    853996 8ozp:H (11.9) BS01 peptide N/A GO:0019031 ... A0A1Q1N9U9 39013471
    853997 8ozp:H (11.9) BS02 CLR N/A GO:0019031 ... A0A1Q1N9U9 39013471
    853998 8ozp:L (11.9) BS01 MAN N/A GO:0019031 ... A0A1Q1N9U9 39013471
    853999 8ozp:L (11.9) BS02 CLR N/A GO:0019031 ... A0A1Q1N9U9 39013471
    854000 8ozq:A (10.0) BS01 peptide N/A GO:0019031 ... A0A1Q1N9U9 39013471

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).