SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    854001 8pg3:A (1.26) BS02 ZN N/A N/A Q9XAY4 N/A
    854002 8pg3:A (1.26) BS03 YL9 N/A N/A Q9XAY4 N/A
    854003 8pg4:A (1.38) BS01 ZN N/A N/A Q9XAY4 N/A
    854004 8pg4:A (1.38) BS02 ZN N/A N/A Q9XAY4 N/A
    854005 8pg4:A (1.38) BS03 YTO N/A N/A Q9XAY4 N/A
    854006 8pg5:A (1.25) BS01 ZN N/A N/A Q9XAY4 N/A
    854007 8pg5:A (1.25) BS02 ZN N/A N/A Q9XAY4 N/A
    854008 8pg5:A (1.25) BS03 YR8 N/A N/A Q9XAY4 N/A
    854009 8pg6:A (1.2) BS01 ZN N/A N/A Q9XAY4 N/A
    854010 8pg6:A (1.2) BS02 ZN N/A N/A Q9XAY4 N/A
    854011 8pg6:A (1.2) BS03 YSX N/A N/A Q9XAY4 N/A
    854012 8pg7:A (1.2) BS01 ZN N/A N/A Q9XAY4 N/A
    854013 8pg7:A (1.2) BS02 ZN N/A N/A Q9XAY4 N/A
    854014 8pg7:A (1.2) BS03 YV3 N/A N/A Q9XAY4 N/A
    854015 8pg8:A (1.28) BS01 ZN N/A N/A Q9XAY4 N/A
    854016 8pg8:A (1.28) BS02 ZN N/A N/A Q9XAY4 N/A
    854017 8pg8:A (1.28) BS03 YVC N/A N/A Q9XAY4 N/A
    854018 8pg9:A (1.29) BS01 ZN N/A N/A Q9XAY4 N/A
    854019 8pg9:A (1.29) BS02 ZN N/A N/A Q9XAY4 N/A
    854020 8pg9:A (1.29) BS03 YV8 N/A N/A Q9XAY4 N/A
    854021 8pga:A (1.19) BS01 ZN N/A N/A Q9XAY4 N/A
    854022 8pga:A (1.19) BS02 ZN N/A N/A Q9XAY4 N/A
    854023 8pga:A (1.19) BS03 YLH N/A N/A Q9XAY4 N/A
    854024 8pgb:A (1.34) BS01 ZN N/A N/A Q9XAY4 N/A
    854025 8pgb:A (1.34) BS02 ZN N/A N/A Q9XAY4 N/A
    854026 8pgb:A (1.34) BS03 YSK N/A N/A Q9XAY4 N/A
    854027 8pgc:A (1.3) BS01 ZN N/A N/A Q9XAY4 N/A
    854028 8pgc:A (1.3) BS02 ZN N/A N/A Q9XAY4 N/A
    854029 8pgc:A (1.3) BS03 YSB N/A N/A Q9XAY4 N/A
    854030 8pge:A (1.29) BS01 ZN N/A N/A Q9XAY4 N/A
    854031 8pge:A (1.29) BS02 ZN N/A N/A Q9XAY4 N/A
    854032 8pge:A (1.29) BS03 YU8 N/A N/A Q9XAY4 N/A
    854033 8pgf:A (1.2) BS01 ZN N/A N/A Q9XAY4 N/A
    854034 8pgf:A (1.2) BS02 ZN N/A N/A Q9XAY4 N/A
    854035 8pgf:A (1.2) BS03 XMU N/A N/A Q9XAY4 N/A
    854036 8pgg:A (1.2) BS01 ZN N/A N/A Q9XAY4 N/A
    854037 8pgg:A (1.2) BS02 ZN N/A N/A Q9XAY4 N/A
    854038 8pgg:A (1.2) BS03 YU3 N/A N/A Q9XAY4 N/A
    854039 8pgh:A (1.2) BS01 ZN N/A N/A Q9XAY4 N/A
    854040 8pgh:A (1.2) BS02 ZN N/A N/A Q9XAY4 N/A
    854041 8pgh:A (1.2) BS03 YUZ N/A N/A Q9XAY4 N/A
    854042 8pgi:A (1.4) BS01 ZN N/A N/A Q9XAY4 N/A
    854043 8pgi:A (1.4) BS02 ZN N/A N/A Q9XAY4 N/A
    854044 8pgi:A (1.4) BS03 YRX N/A N/A Q9XAY4 N/A
    854045 8pgj:A (1.2) BS01 ZN N/A N/A Q9XAY4 N/A
    854046 8pgj:A (1.2) BS02 ZN N/A N/A Q9XAY4 N/A
    854047 8pgj:A (1.2) BS03 YMB N/A N/A Q9XAY4 N/A
    854048 8pgk:A (1.24) BS01 ZN N/A N/A Q9XAY4 N/A
    854049 8pgk:A (1.24) BS02 ZN N/A N/A Q9XAY4 N/A
    854050 8pgk:A (1.24) BS03 YVH N/A N/A Q9XAY4 N/A
    854051 8pgl:A (1.2) BS01 ZN N/A N/A Q9XAY4 N/A
    854052 8pgl:A (1.2) BS02 ZN N/A N/A Q9XAY4 N/A
    854053 8pgl:A (1.2) BS03 YK5 N/A N/A Q9XAY4 N/A
    854054 8pgm:A (1.27) BS01 ZN N/A N/A Q9XAY4 N/A
    854055 8pgm:A (1.27) BS02 ZN N/A N/A Q9XAY4 N/A
    854056 8pgm:A (1.27) BS03 YU0 N/A N/A Q9XAY4 N/A
    854057 8pgn:A (1.12) BS01 ZN N/A N/A Q9XAY4 N/A
    854058 8pgn:A (1.12) BS02 ZN N/A N/A Q9XAY4 N/A
    854059 8pgn:A (1.12) BS03 YRF N/A N/A Q9XAY4 N/A
    854060 8pgo:A (1.14) BS01 ZN N/A N/A Q9XAY4 N/A
    854061 8pgo:A (1.14) BS02 ZN N/A N/A Q9XAY4 N/A
    854062 8pgo:A (1.14) BS03 YUQ N/A N/A Q9XAY4 N/A
    854063 8pgp:A (0.97) BS01 ZN N/A N/A Q9XAY4 N/A
    854064 8pgp:A (0.97) BS02 ZN N/A N/A Q9XAY4 N/A
    854065 8pgp:A (0.97) BS03 YSR N/A N/A Q9XAY4 N/A
    854066 8pgq:A (1.24) BS01 ZN N/A N/A Q9XAY4 N/A
    854067 8pgq:A (1.24) BS02 ZN N/A N/A Q9XAY4 N/A
    854068 8pgq:A (1.24) BS03 YUC N/A N/A Q9XAY4 N/A
    854069 8pgr:A (1.22) BS01 ZN N/A N/A Q9XAY4 N/A
    854070 8pgr:A (1.22) BS02 ZN N/A N/A Q9XAY4 N/A
    854071 8pgr:A (1.22) BS03 YJZ N/A N/A Q9XAY4 N/A
    854072 8pgs:A (1.24) BS01 ZN N/A N/A Q9XAY4 N/A
    854073 8pgs:A (1.24) BS02 ZN N/A N/A Q9XAY4 N/A
    854074 8pgs:A (1.24) BS03 YRC N/A N/A Q9XAY4 N/A
    854075 8pgt:A (1.21) BS01 ZN N/A N/A Q9XAY4 N/A
    854076 8pgt:A (1.21) BS02 ZN N/A N/A Q9XAY4 N/A
    854077 8pgt:A (1.21) BS03 YKZ N/A N/A Q9XAY4 N/A
    854078 8pgu:A (1.62) BS01 ZN N/A N/A Q9XAY4 N/A
    854079 8pgu:A (1.62) BS02 ZN N/A N/A Q9XAY4 N/A
    854080 8pgu:A (1.62) BS03 YUH N/A N/A Q9XAY4 N/A
    854081 8pgv:A (1.23) BS01 ZN N/A N/A Q9XAY4 N/A
    854082 8pgv:A (1.23) BS02 ZN N/A N/A Q9XAY4 N/A
    854083 8pgv:A (1.23) BS03 YRT N/A N/A Q9XAY4 N/A
    854084 8pgw:A (1.5) BS01 ZN N/A N/A Q9XAY4 N/A
    854085 8pgw:A (1.5) BS02 ZN N/A N/A Q9XAY4 N/A
    854086 8pgw:A (1.5) BS03 YRK N/A N/A Q9XAY4 N/A
    854087 8pgx:A (1.2) BS01 ZN N/A N/A Q9XAY4 N/A
    854088 8pgx:A (1.2) BS02 ZN N/A N/A Q9XAY4 N/A
    854089 8pgx:A (1.2) BS03 YKO N/A N/A Q9XAY4 N/A
    854090 8pgy:A (1.34) BS01 ZN N/A N/A Q9XAY4 N/A
    854091 8pgy:A (1.34) BS02 ZN N/A N/A Q9XAY4 N/A
    854092 8pgy:A (1.34) BS03 YKH N/A N/A Q9XAY4 N/A
    854093 8pgz:A (1.34) BS01 ZN N/A N/A Q9XAY4 N/A
    854094 8pgz:A (1.34) BS02 ZN N/A N/A Q9XAY4 N/A
    854095 8pgz:A (1.34) BS03 YQW N/A N/A Q9XAY4 N/A
    854096 8ph0:A (1.36) BS01 ZN N/A N/A Q9XAY4 N/A
    854097 8ph0:A (1.36) BS02 ZN N/A N/A Q9XAY4 N/A
    854098 8ph0:A (1.36) BS03 YVO N/A N/A Q9XAY4 N/A
    854099 8ph1:A (1.33) BS01 ZN N/A N/A Q9XAY4 N/A
    854100 8ph1:A (1.33) BS02 ZN N/A N/A Q9XAY4 N/A
    854101 8ph1:A (1.33) BS03 YMF N/A N/A Q9XAY4 N/A
    854102 8ph2:A (1.13) BS01 ZN N/A N/A Q9XAY4 N/A
    854103 8ph2:A (1.13) BS02 ZN N/A N/A Q9XAY4 N/A
    854104 8ph2:A (1.13) BS03 YUU N/A N/A Q9XAY4 N/A
    854105 8ph3:A (1.09) BS01 ZN N/A N/A Q9XAY4 N/A
    854106 8ph3:A (1.09) BS02 ZN N/A N/A Q9XAY4 N/A
    854107 8ph3:A (1.09) BS03 YQR N/A N/A Q9XAY4 N/A
    854108 8ph4:A (1.69) BS01 YQN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 38232960
    854109 8ph4:A (1.69) BS02 YQN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 38232960
    854110 8ph4:B (1.69) BS01 YQN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 38232960
    854111 8ph4:B (1.69) BS02 YQN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 38232960
    854112 8ph5:AAA (1.29) BS01 ZJK 3.2.1.17 GO:0003796 ... P00698 37660867
    854113 8ph5:AAA (1.29) BS02 ZJK 3.2.1.17 GO:0003796 ... P00698 37660867
    854114 8ph6:A (1.07) BS01 ZWL 3.2.1.17 GO:0003796 ... P00698 37660867
    854115 8ph6:A (1.07) BS02 YWV 3.2.1.17 GO:0003796 ... P00698 37660867
    854116 8ph6:A (1.07) BS03 ZWO 3.2.1.17 GO:0003796 ... P00698 37660867
    854117 8ph6:A (1.07) BS04 ZXE 3.2.1.17 GO:0003796 ... P00698 37660867
    854118 8ph7:A (1.406) BS01 ZQ2 3.2.1.17 GO:0003796 ... P00698 37660867
    854119 8ph7:A (1.406) BS02 ZWH 3.2.1.17 GO:0003796 ... P00698 37660867
    854120 8ph8:AAA (1.29) BS01 ZJO 3.2.1.17 GO:0003796 ... P00698 37660867
    854121 8ph9:I (3.0) BS01 rna 2.7.7.6 GO:0000345 ... P0A8V2 38589445
    854122 8ph9:I (3.0) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 38589445
    854123 8ph9:I (3.0) BS03 dna 2.7.7.6 GO:0000345 ... P0A8V2 38589445
    854124 8ph9:J (3.0) BS01 rna 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    854125 8ph9:J (3.0) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    854126 8ph9:J (3.0) BS03 dna 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    854127 8ph9:J (3.0) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    854128 8ph9:J (3.0) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    854129 8ph9:J (3.0) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    854130 8pha:A (2.02) BS01 ORN ? GO:0008168 ... A0A067NAT9 38462720
    854131 8pha:B (2.02) BS01 ORN ? GO:0008168 ... A0A067NAT9 38462720
    854132 8phd:A (2.08) BS01 ATP ? GO:0000287 ... O75794 37507029
    854133 8phd:A (2.08) BS02 MG ? GO:0000287 ... O75794 37507029
    854134 8phd:C (2.08) BS01 ATP ? GO:0000287 ... O75794 37507029
    854135 8phd:C (2.08) BS02 MG ? GO:0000287 ... O75794 37507029
    854136 8phe:A (3.1) BS01 peptide 1.3.8.- GO:0001676 ... Q9H845 38086790
    854137 8phe:A (3.1) BS02 peptide 1.3.8.- GO:0001676 ... Q9H845 38086790
    854138 8phe:B (3.1) BS01 peptide 1.3.8.- GO:0001676 ... Q9H845 38086790
    854139 8phe:B (3.1) BS02 peptide 1.3.8.- GO:0001676 ... Q9H845 38086790
    854140 8phf:A (3.6) BS01 FAD 1.3.8.- GO:0001676 ... Q9H845 38086790
    854141 8phf:A (3.6) BS02 FAD 1.3.8.- GO:0001676 ... Q9H845 38086790
    854142 8phf:B (3.6) BS01 FAD 1.3.8.- GO:0001676 ... Q9H845 38086790
    854143 8phf:B (3.6) BS02 FAD 1.3.8.- GO:0001676 ... Q9H845 38086790
    854144 8phi:F (2.289) BS01 336 ? GO:0019064 ... P03420 38332002
    854145 8phi:F (2.289) BS02 CA ? GO:0019064 ... P03420 38332002
    854146 8phj:0 (3.67) BS01 rna ? GO:0000027 ... P0A7N9 38033086
    854147 8phj:1 (3.67) BS01 rna ? GO:0002181 ... P0A7P5 38033086
    854148 8phj:2 (3.67) BS01 rna ? GO:0002181 ... P0A7Q1 38033086
    854149 8phj:3 (3.67) BS01 rna ? GO:0002181 ... P0A7Q6 38033086
    854150 8phj:3 (3.67) BS02 ZN ? GO:0002181 ... P0A7Q6 38033086
    854151 8phj:4 (3.67) BS01 rna ? GO:0002181 ... P0A7M9 38033086
    854152 8phj:4 (3.67) BS02 rna ? GO:0002181 ... P0A7M9 38033086
    854153 8phj:4 (3.67) BS03 ZN ? GO:0002181 ... P0A7M9 38033086
    854154 8phj:5 (3.67) BS01 rna ? GO:0002181 ... P0A7J3 38033086
    854155 8phj:6 (3.67) BS01 rna ? GO:0000027 ... P0A7J7 38033086
    854156 8phj:B (3.67) BS01 rna ? GO:0000028 ... P0A7V0 38033086
    854157 8phj:C (3.67) BS01 rna ? GO:0000028 ... P0A7V3 38033086
    854158 8phj:D (3.67) BS01 rna ? GO:0000028 ... P0A7V8 38033086
    854159 8phj:E (3.67) BS01 rna ? GO:0000028 ... P0A7W1 38033086
    854160 8phj:F (3.67) BS01 rna ? GO:0002181 ... P02358 38033086
    854161 8phj:G (3.67) BS01 rna ? GO:0000028 ... P02359 38033086
    854162 8phj:G (3.67) BS02 rna ? GO:0000028 ... P02359 38033086
    854163 8phj:H (3.67) BS01 rna ? GO:0000028 ... P0A7W7 38033086
    854164 8phj:I (3.67) BS01 rna ? GO:0000049 ... P0A7X3 38033086
    854165 8phj:J (3.67) BS01 rna ? GO:0000049 ... P0A7R5 38033086
    854166 8phj:K (3.67) BS01 rna ? GO:0002181 ... P0A7R9 38033086
    854167 8phj:L (3.67) BS01 rna ? GO:0000049 ... P0A7S3 38033086
    854168 8phj:M (3.67) BS01 rna ? GO:0000049 ... P0A7S9 38033086
    854169 8phj:M (3.67) BS02 rna ? GO:0000049 ... P0A7S9 38033086
    854170 8phj:N (3.67) BS01 rna ? GO:0000028 ... P0AG59 38033086
    854171 8phj:O (3.67) BS01 rna ? GO:0000028 ... P0ADZ4 38033086
    854172 8phj:O (3.67) BS02 rna ? GO:0000028 ... P0ADZ4 38033086
    854173 8phj:P (3.67) BS01 rna ? GO:0000028 ... P0A7T3 38033086
    854174 8phj:Q (3.67) BS01 rna ? GO:0000028 ... P0AG63 38033086
    854175 8phj:R (3.67) BS01 rna ? GO:0002181 ... P0A7T7 38033086
    854176 8phj:S (3.67) BS01 rna ? GO:0000028 ... P0A7U3 38033086
    854177 8phj:T (3.67) BS01 rna ? GO:0000028 ... P0A7U7 38033086
    854178 8phj:U (3.67) BS01 rna ? GO:0000028 ... P68679 38033086
    854179 8phj:X (3.67) BS01 rna ? N/A D3RW14 38033086
    854180 8phj:X (3.67) BS02 rna ? N/A D3RW14 38033086
    854181 8phj:Y (3.67) BS01 rna ? N/A D3RW14 38033086
    854182 8phj:Y (3.67) BS02 rna ? N/A D3RW14 38033086
    854183 8phj:c (3.67) BS01 rna ? GO:0000027 ... P60422 38033086
    854184 8phj:d (3.67) BS01 rna ? GO:0000027 ... P60438 38033086
    854185 8phj:e (3.67) BS01 rna ? GO:0001070 ... P60723 38033086
    854186 8phj:f (3.67) BS01 rna ? GO:0000027 ... P62399 38033086
    854187 8phj:f (3.67) BS02 rna ? GO:0000027 ... P62399 38033086
    854188 8phj:f (3.67) BS03 rna ? GO:0000027 ... P62399 38033086
    854189 8phj:g (3.67) BS01 rna ? GO:0000027 ... P0AG55 38033086
    854190 8phj:h (3.67) BS01 rna ? GO:0002181 ... P0A7R1 38033086
    854191 8phj:i (3.67) BS01 rna ? GO:0002181 ... P0AA10 38033086
    854192 8phj:j (3.67) BS01 rna ? GO:0002181 ... P0ADY3 38033086
    854193 8phj:j (3.67) BS02 rna ? GO:0002181 ... P0ADY3 38033086
    854194 8phj:k (3.67) BS01 rna ? GO:0002181 ... P02413 38033086
    854195 8phj:l (3.67) BS01 rna ? GO:0000027 ... P0ADY7 38033086
    854196 8phj:m (3.67) BS01 rna ? GO:0000027 ... P0AG44 38033086
    854197 8phj:n (3.67) BS01 rna ? GO:0002181 ... P0C018 38033086
    854198 8phj:n (3.67) BS02 rna ? GO:0002181 ... P0C018 38033086
    854199 8phj:o (3.67) BS01 rna ? GO:0000027 ... P0A7K6 38033086
    854200 8phj:o (3.67) BS02 rna ? GO:0000027 ... P0A7K6 38033086

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).