SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    854201 8phj:p (3.67) BS01 rna ? GO:0000027 ... P0A7L3 38033086
    854202 8phj:q (3.67) BS01 rna ? GO:0002181 ... P0AG48 38033086
    854203 8phj:r (3.67) BS01 rna ? GO:0002181 ... P61175 38033086
    854204 8phj:s (3.67) BS01 rna ? GO:0000027 ... P0ADZ0 38033086
    854205 8phj:t (3.67) BS01 rna ? GO:0000027 ... P60624 38033086
    854206 8phj:u (3.67) BS01 rna ? GO:0000027 ... P68919 38033086
    854207 8phj:v (3.67) BS01 rna ? GO:0000027 ... P0A7L8 38033086
    854208 8phj:v (3.67) BS02 rna ? GO:0000027 ... P0A7L8 38033086
    854209 8phj:w (3.67) BS01 rna ? GO:0000027 ... P0A7M2 38033086
    854210 8phj:x (3.67) BS01 rna ? GO:0000027 ... P0A7M6 38033086
    854211 8phj:y (3.67) BS01 rna ? GO:0000027 ... P0AG51 38033086
    854212 8phj:z (3.67) BS01 rna ? GO:0000027 ... P0A7N4 38033086
    854213 8phk:I (3.1) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 38589445
    854214 8phk:I (3.1) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 38589445
    854215 8phk:I (3.1) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 38589445
    854216 8phk:J (3.1) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    854217 8phk:J (3.1) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    854218 8phk:J (3.1) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    854219 8phk:J (3.1) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    854220 8phk:J (3.1) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    854221 8phk:J (3.1) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    854222 8phk:P (3.1) BS01 dna ? GO:0001000 ... P0AFW0 38589445
    854223 8phl:A (1.3) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 38358125
    854224 8phm:A (1.45) BS01 CO N/A GO:0002009 ... P00918 38805564
    854225 8phm:A (1.45) BS02 HGB N/A GO:0002009 ... P00918 38805564
    854226 8phm:A (1.45) BS03 OXD N/A GO:0002009 ... P00918 38805564
    854227 8phn:A (1.9) BS01 MG N/A GO:0000160 ... G0SBK1 38965424
    854228 8phs:AC (2.82) BS01 peptide N/A N/A N/A 37866476
    854229 8phs:BK (2.82) BS01 peptide N/A N/A N/A 37866476
    854230 8phs:BV (2.82) BS01 peptide N/A N/A N/A 37866476
    854231 8phs:CD (2.82) BS01 peptide N/A N/A N/A 37866476
    854232 8phs:CN (2.82) BS01 peptide N/A N/A N/A 37866476
    854233 8phu:AC (7.41) BS01 peptide N/A N/A N/A 37866476
    854234 8phu:BK (7.41) BS01 peptide N/A N/A N/A 37866476
    854235 8phu:BU (7.41) BS01 peptide N/A N/A N/A 37866476
    854236 8phu:BV (7.41) BS01 peptide N/A N/A N/A 37866476
    854237 8phu:CD (7.41) BS01 peptide N/A N/A N/A 37866476
    854238 8phu:CN (7.41) BS01 peptide N/A N/A N/A 37866476
    854239 8phu:DC (7.41) BS01 peptide N/A N/A N/A 37866476
    854240 8phu:EK (7.41) BS01 peptide N/A N/A N/A 37866476
    854241 8phu:EV (7.41) BS01 peptide N/A N/A N/A 37866476
    854242 8phu:FD (7.41) BS01 peptide N/A N/A N/A 37866476
    854243 8phu:FN (7.41) BS01 peptide N/A N/A N/A 37866476
    854244 8phu:GC (7.41) BS01 peptide N/A N/A N/A 37866476
    854245 8phu:HK (7.41) BS01 peptide N/A N/A N/A 37866476
    854246 8phu:HV (7.41) BS01 peptide N/A N/A N/A 37866476
    854247 8phu:ID (7.41) BS01 peptide N/A N/A N/A 37866476
    854248 8phu:IN (7.41) BS01 peptide N/A N/A N/A 37866476
    854249 8phu:JC (7.41) BS01 peptide N/A N/A N/A 37866476
    854250 8phu:KK (7.41) BS01 peptide N/A N/A N/A 37866476
    854251 8phu:KV (7.41) BS01 peptide N/A N/A N/A 37866476
    854252 8phu:LD (7.41) BS01 peptide N/A N/A N/A 37866476
    854253 8phu:LN (7.41) BS01 peptide N/A N/A N/A 37866476
    854254 8phu:MC (7.41) BS01 peptide N/A N/A N/A 37866476
    854255 8phu:NK (7.41) BS01 peptide N/A N/A N/A 37866476
    854256 8phu:NU (7.41) BS01 peptide N/A N/A N/A 37866476
    854257 8phu:NV (7.41) BS01 peptide N/A N/A N/A 37866476
    854258 8phu:OD (7.41) BS01 peptide N/A N/A N/A 37866476
    854259 8phu:ON (7.41) BS01 peptide N/A N/A N/A 37866476
    854260 8phv:A (1.97) BS01 ATP ? GO:0000287 ... O75794 37507029
    854261 8phv:C (1.97) BS01 ATP ? GO:0000287 ... O75794 37507029
    854262 8phw:A (3.6) BS01 FY5 ? GO:0005886 ... Q9Y6L6 37723174
    854263 8phx:A (1.5) BS01 MG N/A GO:0000160 ... Q5A872 38965424
    854264 8phx:B (1.5) BS01 MG N/A GO:0000160 ... Q5A872 38965424
    854265 8phx:C (1.5) BS01 MG N/A GO:0000160 ... Q5A872 38965424
    854266 8phx:D (1.5) BS01 MG N/A GO:0000160 ... Q5A872 38965424
    854267 8phz:A (2.35) BS01 ZN N/A N/A Q8JUX6 39285216
    854268 8phz:B (2.35) BS01 ZN N/A N/A Q8JUX6 39285216
    854269 8phz:C (2.35) BS01 ZN N/A N/A Q8JUX6 39285216
    854270 8phz:D (2.35) BS01 ZN N/A N/A Q8JUX6 39285216
    854271 8phz:E (2.35) BS01 ZN N/A N/A Q8JUX6 39285216
    854272 8pi0:A (-1.00) BS01 YVW N/A GO:0003924 ... P01116 N/A
    854273 8pi1:A (2.5) BS01 ZIZ 1.-.-.-
    3.1.1.2
    GO:0003824 ... P22862 38344167
    854274 8pi1:B (2.5) BS01 ZIZ 1.-.-.-
    3.1.1.2
    GO:0003824 ... P22862 38344167
    854275 8pi1:C (2.5) BS01 ZIZ 1.-.-.-
    3.1.1.2
    GO:0003824 ... P22862 38344167
    854276 8pi1:D (2.5) BS01 ZIZ 1.-.-.-
    3.1.1.2
    GO:0003824 ... P22862 38344167
    854277 8pi1:E (2.5) BS01 ZIZ 1.-.-.-
    3.1.1.2
    GO:0003824 ... P22862 38344167
    854278 8pi1:F (2.5) BS01 ZIZ 1.-.-.-
    3.1.1.2
    GO:0003824 ... P22862 38344167
    854279 8pi1:G (2.5) BS01 ZIZ 1.-.-.-
    3.1.1.2
    GO:0003824 ... P22862 38344167
    854280 8pi1:H (2.5) BS01 ZIZ 1.-.-.-
    3.1.1.2
    GO:0003824 ... P22862 38344167
    854281 8pi1:I (2.5) BS01 ZIZ 1.-.-.-
    3.1.1.2
    GO:0003824 ... P22862 38344167
    854282 8pi1:J (2.5) BS01 ZIZ 1.-.-.-
    3.1.1.2
    GO:0003824 ... P22862 38344167
    854283 8pi1:K (2.5) BS01 ZIZ 1.-.-.-
    3.1.1.2
    GO:0003824 ... P22862 38344167
    854284 8pi1:M (2.5) BS01 ZIZ 1.-.-.-
    3.1.1.2
    GO:0003824 ... P22862 38344167
    854285 8pi1:N (2.5) BS01 ZIZ 1.-.-.-
    3.1.1.2
    GO:0003824 ... P22862 38344167
    854286 8pi1:O (2.5) BS01 ZIZ 1.-.-.-
    3.1.1.2
    GO:0003824 ... P22862 38344167
    854287 8pi2:A (1.48) BS01 GLY ? GO:0002020 ... P01009 N/A
    854288 8pi3:A (1.73) BS01 peptide 3.4.22.27 GO:0006508 ... P25774 38811854
    854289 8pi5:D (1.66) BS01 RCO ? GO:0005179 ... P01308 37880066
    854290 8pi7:A (3.2) BS01 dna N/A GO:0001889 ... P20823 38855865
    854291 8pi7:A (3.2) BS02 dna N/A GO:0001889 ... P20823 38855865
    854292 8pi7:B (3.2) BS01 dna N/A GO:0001889 ... P20823 38855865
    854293 8pi7:B (3.2) BS02 dna N/A GO:0001889 ... P20823 38855865
    854294 8pi8:A (2.3) BS01 dna N/A GO:0001889 ... P20823 38855865
    854295 8pi8:A (2.3) BS02 dna N/A GO:0001889 ... P20823 38855865
    854296 8pi8:B (2.3) BS01 dna N/A GO:0001889 ... P20823 38855865
    854297 8pi8:B (2.3) BS02 dna N/A GO:0001889 ... P20823 38855865
    854298 8pi9:A (2.8) BS01 dna N/A GO:0001889 ... P20823 38855865
    854299 8pi9:A (2.8) BS02 dna N/A GO:0001889 ... P20823 38855865
    854300 8pi9:B (2.8) BS01 dna N/A GO:0001889 ... P20823 38855865
    854301 8pi9:B (2.8) BS02 dna N/A GO:0001889 ... P20823 38855865
    854302 8pia:A (2.8) BS01 dna N/A GO:0001889 ... P20823 38855865
    854303 8pia:A (2.8) BS02 dna N/A GO:0001889 ... P20823 38855865
    854304 8pia:B (2.8) BS01 dna N/A GO:0001889 ... P20823 38855865
    854305 8pia:B (2.8) BS02 dna N/A GO:0001889 ... P20823 38855865
    854306 8pib:I (2.6) BS01 rna 2.7.7.6 GO:0000345 ... P0A8V2 38589445
    854307 8pib:I (2.6) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 38589445
    854308 8pib:I (2.6) BS03 dna 2.7.7.6 GO:0000345 ... P0A8V2 38589445
    854309 8pib:J (2.6) BS01 rna 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    854310 8pib:J (2.6) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    854311 8pib:J (2.6) BS03 dna 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    854312 8pib:J (2.6) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    854313 8pib:J (2.6) BS05 MG 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    854314 8pib:P (2.6) BS01 dna ? GO:0001000 ... P0AFW0 38589445
    854315 8pib:P (2.6) BS02 dna ? GO:0001000 ... P0AFW0 38589445
    854316 8pid:I (3.0) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 38589445
    854317 8pid:I (3.0) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 38589445
    854318 8pid:I (3.0) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 38589445
    854319 8pid:J (3.0) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    854320 8pid:J (3.0) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    854321 8pid:J (3.0) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    854322 8pid:J (3.0) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    854323 8pid:J (3.0) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    854324 8pid:J (3.0) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    854325 8pid:P (3.0) BS01 dna ? GO:0001000 ... P0AFW0 38589445
    854326 8pid:P (3.0) BS02 dna ? GO:0001000 ... P0AFW0 38589445
    854327 8pie:A (1.9) BS01 7QT N/A GO:0000155 ... P22392 39190717
    854328 8pie:B (1.9) BS01 7QT N/A GO:0000155 ... P22392 39190717
    854329 8pie:C (1.9) BS01 7QT N/A GO:0000155 ... P22392 39190717
    854330 8pie:D (1.9) BS01 7QT N/A GO:0000155 ... P22392 39190717
    854331 8pie:E (1.9) BS01 7QT N/A GO:0000155 ... P22392 39190717
    854332 8pie:F (1.9) BS01 7QT N/A GO:0000155 ... P22392 39190717
    854333 8pif:A (1.782) BS01 YW6 ? N/A Q9Y2U9 N/A
    854334 8pif:B (1.782) BS01 YW6 ? N/A Q9Y2U9 N/A
    854335 8pii:A (2.35) BS01 peptide N/A N/A N/A 38484799
    854336 8pij:A (2.9) BS01 G3P ? GO:0007155 ... A0A9K2KM41 38499587
    854337 8pij:A (2.9) BS02 WKE ? GO:0007155 ... A0A9K2KM41 38499587
    854338 8pij:B (2.9) BS01 G3P N/A N/A N/A 38499587
    854339 8pil:I (3.2) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 38589445
    854340 8pil:I (3.2) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 38589445
    854341 8pil:I (3.2) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 38589445
    854342 8pil:J (3.2) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    854343 8pil:J (3.2) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    854344 8pil:J (3.2) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    854345 8pil:J (3.2) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    854346 8pil:J (3.2) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    854347 8pil:J (3.2) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    854348 8pil:P (3.2) BS01 dna ? GO:0001000 ... P0AFW0 38589445
    854349 8pil:P (3.2) BS02 dna ? GO:0001000 ... P0AFW0 38589445
    854350 8pim:I (3.4) BS01 rna 2.7.7.6 GO:0000345 ... P0A8V2 38589445
    854351 8pim:I (3.4) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 38589445
    854352 8pim:I (3.4) BS03 dna 2.7.7.6 GO:0000345 ... P0A8V2 38589445
    854353 8pim:J (3.4) BS01 rna 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    854354 8pim:J (3.4) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    854355 8pim:J (3.4) BS03 dna 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    854356 8pim:J (3.4) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    854357 8pim:J (3.4) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    854358 8pim:J (3.4) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    854359 8pim:P (3.4) BS01 dna ? GO:0001000 ... P0AFW0 38589445
    854360 8pim:P (3.4) BS02 dna ? GO:0001000 ... P0AFW0 38589445
    854361 8pin:A (3.19) BS01 NAD N/A N/A P40510 N/A
    854362 8pin:B (3.19) BS01 NAD N/A N/A P40510 N/A
    854363 8pin:C (3.19) BS01 peptide N/A N/A P40510 N/A
    854364 8pin:C (3.19) BS02 NAD N/A N/A P40510 N/A
    854365 8pin:D (3.19) BS01 peptide N/A N/A P40510 N/A
    854366 8pin:D (3.19) BS02 NAD N/A N/A P40510 N/A
    854367 8pio:A (2.6) BS01 NAD N/A N/A N/A N/A
    854368 8pio:A (2.6) BS02 HPV N/A N/A N/A N/A
    854369 8pio:B (2.6) BS01 NAD N/A N/A N/A N/A
    854370 8pio:B (2.6) BS02 HPV N/A N/A N/A N/A
    854371 8pio:C (2.6) BS01 NAD N/A N/A N/A N/A
    854372 8pio:C (2.6) BS02 HPV N/A N/A N/A N/A
    854373 8pio:F (2.6) BS01 NAD N/A N/A N/A N/A
    854374 8pio:F (2.6) BS02 HPV N/A N/A N/A N/A
    854375 8piq:A (1.117) BS01 ZHO ? N/A O60885 N/A
    854376 8pir:A (2.7) BS01 NAD N/A N/A N/A N/A
    854377 8pir:B (2.7) BS01 NAD N/A N/A N/A N/A
    854378 8pir:C (2.7) BS01 NAD N/A N/A N/A N/A
    854379 8pir:F (2.7) BS01 NAD N/A N/A N/A N/A
    854380 8pis:A (2.69) BS01 peptide N/A N/A N/A N/A
    854381 8pis:A (2.69) BS02 NAD N/A N/A N/A N/A
    854382 8pis:A (2.69) BS03 SER N/A N/A N/A N/A
    854383 8pis:A (2.69) BS04 SER N/A N/A N/A N/A
    854384 8pis:B (2.69) BS01 peptide N/A N/A N/A N/A
    854385 8pis:B (2.69) BS02 SER N/A N/A N/A N/A
    854386 8pis:B (2.69) BS03 NAD N/A N/A N/A N/A
    854387 8pis:B (2.69) BS04 SER N/A N/A N/A N/A
    854388 8pis:C (2.69) BS01 peptide N/A N/A N/A N/A
    854389 8pis:C (2.69) BS02 NAD N/A N/A N/A N/A
    854390 8pis:C (2.69) BS03 SER N/A N/A N/A N/A
    854391 8pis:C (2.69) BS04 SER N/A N/A N/A N/A
    854392 8pis:D (2.69) BS01 peptide N/A N/A N/A N/A
    854393 8pis:D (2.69) BS02 SER N/A N/A N/A N/A
    854394 8pis:D (2.69) BS03 NAD N/A N/A N/A N/A
    854395 8pis:D (2.69) BS04 SER N/A N/A N/A N/A
    854396 8pis:E (2.69) BS01 peptide N/A N/A N/A N/A
    854397 8pis:E (2.69) BS02 NAD N/A N/A N/A N/A
    854398 8pis:E (2.69) BS03 SER N/A N/A N/A N/A
    854399 8pis:E (2.69) BS04 SER N/A N/A N/A N/A
    854400 8pis:F (2.69) BS01 peptide N/A N/A N/A N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).