SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    854201 8p0t:a (2.65) BS01 X5C ? GO:0005634 ... A2F716 39366995
    854202 8p0u:A (2.92) BS01 rna ? GO:0003723 ... P27194 N/A
    854203 8p0u:A (2.92) BS02 rna ? GO:0003723 ... P27194 N/A
    854204 8p0u:B (2.92) BS01 rna 2.7.7.48 GO:0000166 ... O41353 N/A
    854205 8p0u:B (2.92) BS02 rna 2.7.7.48 GO:0000166 ... O41353 N/A
    854206 8p0u:B (2.92) BS03 MG 2.7.7.48 GO:0000166 ... O41353 N/A
    854207 8p0y:A (4.12) BS01 peptide ? GO:0019013 ... A0A1Q1NMU1 37888996
    854208 8p10:L (3.26) BS01 peptide ? GO:0019013 ... A0A1Q1NMU1 37888996
    854209 8p11:D (1.9) BS01 WD5 ? GO:0004888 ... P58154 40896114
    854210 8p11:E (1.9) BS01 WD5 ? GO:0004888 ... P58154 40896114
    854211 8p11:F (1.9) BS01 WD5 ? GO:0004888 ... P58154 40896114
    854212 8p11:G (1.9) BS01 WD5 ? GO:0004888 ... P58154 40896114
    854213 8p11:G (1.9) BS02 WD5 ? GO:0004888 ... P58154 40896114
    854214 8p11:H (1.9) BS01 WD5 ? GO:0004888 ... P58154 40896114
    854215 8p11:H (1.9) BS02 WD5 ? GO:0004888 ... P58154 40896114
    854216 8p11:I (1.9) BS01 WD5 ? GO:0004888 ... P58154 40896114
    854217 8p14:A (2.57) BS01 VIS 3.4.19.12 GO:0004843 ... Q96RU2 38816515
    854218 8p16:6 (2.77) BS01 rna ? GO:0003747 ... P07012 N/A
    854219 8p16:6 (2.77) BS02 rna ? GO:0003747 ... P07012 N/A
    854220 8p16:6 (2.77) BS03 rna ? GO:0003747 ... P07012 N/A
    854221 8p16:6 (2.77) BS04 rna ? GO:0003747 ... P07012 N/A
    854222 8p16:B (2.77) BS01 rna ? GO:0000027 ... P60422 N/A
    854223 8p16:B (2.77) BS02 rna ? GO:0000027 ... P60422 N/A
    854224 8p16:C (2.77) BS01 rna ? GO:0000027 ... P60438 N/A
    854225 8p16:D (2.77) BS01 rna ? GO:0001070 ... P60723 N/A
    854226 8p16:E (2.77) BS01 rna ? GO:0000027 ... P62399 N/A
    854227 8p16:E (2.77) BS02 rna ? GO:0000027 ... P62399 N/A
    854228 8p16:E (2.77) BS03 rna ? GO:0000027 ... P62399 N/A
    854229 8p16:F (2.77) BS01 rna ? GO:0000027 ... P0AG55 N/A
    854230 8p16:G (2.77) BS01 rna ? GO:0002181 ... P0A7R1 N/A
    854231 8p16:I (2.77) BS01 rna ? GO:0000027 ... P0A7J7 N/A
    854232 8p16:J (2.77) BS01 rna ? GO:0002181 ... P0AA10 N/A
    854233 8p16:K (2.77) BS01 rna ? GO:0002181 ... P0ADY3 N/A
    854234 8p16:K (2.77) BS02 rna ? GO:0002181 ... P0ADY3 N/A
    854235 8p16:L (2.77) BS01 rna ? GO:0002181 ... P02413 N/A
    854236 8p16:M (2.77) BS01 rna ? GO:0000027 ... P0ADY7 N/A
    854237 8p16:M (2.77) BS02 rna ? GO:0000027 ... P0ADY7 N/A
    854238 8p16:N (2.77) BS01 rna ? GO:0000027 ... P0AG44 N/A
    854239 8p16:O (2.77) BS01 rna ? GO:0002181 ... P0C018 N/A
    854240 8p16:O (2.77) BS02 rna ? GO:0002181 ... P0C018 N/A
    854241 8p16:P (2.77) BS01 rna ? GO:0000027 ... P0A7K6 N/A
    854242 8p16:P (2.77) BS02 rna ? GO:0000027 ... P0A7K6 N/A
    854243 8p16:Q (2.77) BS01 rna ? GO:0000027 ... P0A7L3 N/A
    854244 8p16:R (2.77) BS01 rna ? GO:0002181 ... P0AG48 N/A
    854245 8p16:S (2.77) BS01 rna ? GO:0002181 ... P61175 N/A
    854246 8p16:T (2.77) BS01 rna ? GO:0000027 ... P0ADZ0 N/A
    854247 8p16:U (2.77) BS01 rna ? GO:0000027 ... P60624 N/A
    854248 8p16:V (2.77) BS01 rna ? GO:0000027 ... P68919 N/A
    854249 8p16:V (2.77) BS02 rna ? GO:0000027 ... P68919 N/A
    854250 8p16:W (2.77) BS01 rna ? GO:0000027 ... P0A7L8 N/A
    854251 8p16:W (2.77) BS02 rna ? GO:0000027 ... P0A7L8 N/A
    854252 8p16:X (2.77) BS01 rna ? GO:0000027 ... P0A7M2 N/A
    854253 8p16:Y (2.77) BS01 rna ? GO:0000027 ... P0A7M6 N/A
    854254 8p16:Z (2.77) BS01 rna ? GO:0000027 ... P0AG51 N/A
    854255 8p16:Z (2.77) BS02 rna ? GO:0000027 ... P0AG51 N/A
    854256 8p16:a (2.77) BS01 rna ? GO:0002181 ... P0A7M9 N/A
    854257 8p16:a (2.77) BS02 rna ? GO:0002181 ... P0A7M9 N/A
    854258 8p16:a (2.77) BS03 ZN ? GO:0002181 ... P0A7M9 N/A
    854259 8p16:b (2.77) BS01 rna ? GO:0000027 ... P0A7N4 N/A
    854260 8p16:c (2.77) BS01 rna ? GO:0000027 ... P0A7N9 N/A
    854261 8p16:d (2.77) BS01 rna ? GO:0002181 ... P0A7P5 N/A
    854262 8p16:e (2.77) BS01 rna ? GO:0002181 ... P0A7Q1 N/A
    854263 8p16:f (2.77) BS01 rna ? GO:0002181 ... P0A7Q6 N/A
    854264 8p16:f (2.77) BS02 ZN ? GO:0002181 ... P0A7Q6 N/A
    854265 8p16:g (2.77) BS01 rna ? GO:0000028 ... P0A7V0 N/A
    854266 8p16:h (2.77) BS01 rna ? GO:0000028 ... P0A7V3 N/A
    854267 8p16:h (2.77) BS02 rna ? GO:0000028 ... P0A7V3 N/A
    854268 8p16:i (2.77) BS01 rna ? GO:0000028 ... P0A7V8 N/A
    854269 8p16:j (2.77) BS01 rna ? GO:0000028 ... P0A7W1 N/A
    854270 8p16:j (2.77) BS02 rna ? GO:0000028 ... P0A7W1 N/A
    854271 8p16:k (2.77) BS01 rna ? GO:0002181 ... P02358 N/A
    854272 8p16:l (2.77) BS01 rna ? GO:0000028 ... P02359 N/A
    854273 8p16:l (2.77) BS02 rna ? GO:0000028 ... P02359 N/A
    854274 8p16:m (2.77) BS01 rna ? GO:0000028 ... P0A7W7 N/A
    854275 8p16:n (2.77) BS01 rna ? GO:0002181 ... P0A7X3 N/A
    854276 8p16:n (2.77) BS02 rna ? GO:0002181 ... P0A7X3 N/A
    854277 8p16:o (2.77) BS01 rna ? GO:0000049 ... P0A7R5 N/A
    854278 8p16:p (2.77) BS01 rna ? GO:0002181 ... P0A7R9 N/A
    854279 8p16:q (2.77) BS01 rna ? GO:0000049 ... P0A7S3 N/A
    854280 8p16:r (2.77) BS01 rna ? GO:0000049 ... P0A7S9 N/A
    854281 8p16:r (2.77) BS02 rna ? GO:0000049 ... P0A7S9 N/A
    854282 8p16:s (2.77) BS01 rna ? GO:0000028 ... P0AG59 N/A
    854283 8p16:t (2.77) BS01 rna ? GO:0000028 ... P0ADZ4 N/A
    854284 8p16:t (2.77) BS02 rna ? GO:0000028 ... P0ADZ4 N/A
    854285 8p16:u (2.77) BS01 rna ? GO:0000028 ... P0A7T3 N/A
    854286 8p16:v (2.77) BS01 rna ? GO:0000028 ... P0AG63 N/A
    854287 8p16:w (2.77) BS01 rna ? GO:0002181 ... P0A7T7 N/A
    854288 8p16:x (2.77) BS01 rna ? GO:0002181 ... P0A7U3 N/A
    854289 8p16:y (2.77) BS01 rna ? GO:0000028 ... P0A7U7 N/A
    854290 8p16:z (2.77) BS01 rna ? GO:0000028 ... P68679 N/A
    854291 8p16:z (2.77) BS02 rna ? GO:0000028 ... P68679 N/A
    854292 8p17:6 (2.78) BS01 rna ? GO:0003747 ... P07012 N/A
    854293 8p17:6 (2.78) BS02 rna ? GO:0003747 ... P07012 N/A
    854294 8p17:6 (2.78) BS03 rna ? GO:0003747 ... P07012 N/A
    854295 8p17:6 (2.78) BS04 rna ? GO:0003747 ... P07012 N/A
    854296 8p17:B (2.78) BS01 rna ? GO:0000027 ... P60422 N/A
    854297 8p17:B (2.78) BS02 rna ? GO:0000027 ... P60422 N/A
    854298 8p17:C (2.78) BS01 rna ? GO:0000027 ... P60438 N/A
    854299 8p17:D (2.78) BS01 rna ? GO:0001070 ... P60723 N/A
    854300 8p17:E (2.78) BS01 rna ? GO:0000027 ... P62399 N/A
    854301 8p17:E (2.78) BS02 rna ? GO:0000027 ... P62399 N/A
    854302 8p17:E (2.78) BS03 rna ? GO:0000027 ... P62399 N/A
    854303 8p17:F (2.78) BS01 rna ? GO:0000027 ... P0AG55 N/A
    854304 8p17:G (2.78) BS01 rna ? GO:0002181 ... P0A7R1 N/A
    854305 8p17:I (2.78) BS01 rna ? GO:0000027 ... P0A7J7 N/A
    854306 8p17:J (2.78) BS01 rna ? GO:0002181 ... P0AA10 N/A
    854307 8p17:K (2.78) BS01 rna ? GO:0002181 ... P0ADY3 N/A
    854308 8p17:K (2.78) BS02 rna ? GO:0002181 ... P0ADY3 N/A
    854309 8p17:L (2.78) BS01 rna ? GO:0002181 ... P02413 N/A
    854310 8p17:M (2.78) BS01 rna ? GO:0000027 ... P0ADY7 N/A
    854311 8p17:M (2.78) BS02 rna ? GO:0000027 ... P0ADY7 N/A
    854312 8p17:N (2.78) BS01 rna ? GO:0000027 ... P0AG44 N/A
    854313 8p17:O (2.78) BS01 rna ? GO:0002181 ... P0C018 N/A
    854314 8p17:O (2.78) BS02 rna ? GO:0002181 ... P0C018 N/A
    854315 8p17:P (2.78) BS01 rna ? GO:0000027 ... P0A7K6 N/A
    854316 8p17:P (2.78) BS02 rna ? GO:0000027 ... P0A7K6 N/A
    854317 8p17:Q (2.78) BS01 rna ? GO:0000027 ... P0A7L3 N/A
    854318 8p17:R (2.78) BS01 rna ? GO:0002181 ... P0AG48 N/A
    854319 8p17:S (2.78) BS01 rna ? GO:0002181 ... P61175 N/A
    854320 8p17:T (2.78) BS01 rna ? GO:0000027 ... P0ADZ0 N/A
    854321 8p17:U (2.78) BS01 rna ? GO:0000027 ... P60624 N/A
    854322 8p17:V (2.78) BS01 rna ? GO:0000027 ... P68919 N/A
    854323 8p17:W (2.78) BS01 rna ? GO:0000027 ... P0A7L8 N/A
    854324 8p17:W (2.78) BS02 rna ? GO:0000027 ... P0A7L8 N/A
    854325 8p17:X (2.78) BS01 rna ? GO:0000027 ... P0A7M2 N/A
    854326 8p17:Y (2.78) BS01 rna ? GO:0000027 ... P0A7M6 N/A
    854327 8p17:Z (2.78) BS01 rna ? GO:0000027 ... P0AG51 N/A
    854328 8p17:Z (2.78) BS02 rna ? GO:0000027 ... P0AG51 N/A
    854329 8p17:a (2.78) BS01 rna ? GO:0002181 ... P0A7M9 N/A
    854330 8p17:a (2.78) BS02 rna ? GO:0002181 ... P0A7M9 N/A
    854331 8p17:a (2.78) BS03 ZN ? GO:0002181 ... P0A7M9 N/A
    854332 8p17:b (2.78) BS01 rna ? GO:0000027 ... P0A7N4 N/A
    854333 8p17:c (2.78) BS01 rna ? GO:0000027 ... P0A7N9 N/A
    854334 8p17:d (2.78) BS01 rna ? GO:0002181 ... P0A7P5 N/A
    854335 8p17:e (2.78) BS01 rna ? GO:0002181 ... P0A7Q1 N/A
    854336 8p17:f (2.78) BS01 rna ? GO:0002181 ... P0A7Q6 N/A
    854337 8p17:f (2.78) BS02 ZN ? GO:0002181 ... P0A7Q6 N/A
    854338 8p17:g (2.78) BS01 rna ? GO:0000028 ... P0A7V0 N/A
    854339 8p17:h (2.78) BS01 rna ? GO:0000028 ... P0A7V3 N/A
    854340 8p17:h (2.78) BS02 rna ? GO:0000028 ... P0A7V3 N/A
    854341 8p17:i (2.78) BS01 rna ? GO:0000028 ... P0A7V8 N/A
    854342 8p17:j (2.78) BS01 rna ? GO:0000028 ... P0A7W1 N/A
    854343 8p17:j (2.78) BS02 rna ? GO:0000028 ... P0A7W1 N/A
    854344 8p17:k (2.78) BS01 rna ? GO:0002181 ... P02358 N/A
    854345 8p17:l (2.78) BS01 rna ? GO:0000028 ... P02359 N/A
    854346 8p17:l (2.78) BS02 rna ? GO:0000028 ... P02359 N/A
    854347 8p17:m (2.78) BS01 rna ? GO:0000028 ... P0A7W7 N/A
    854348 8p17:n (2.78) BS01 rna ? GO:0002181 ... P0A7X3 N/A
    854349 8p17:n (2.78) BS02 rna ? GO:0002181 ... P0A7X3 N/A
    854350 8p17:o (2.78) BS01 rna ? GO:0000049 ... P0A7R5 N/A
    854351 8p17:p (2.78) BS01 rna ? GO:0002181 ... P0A7R9 N/A
    854352 8p17:q (2.78) BS01 rna ? GO:0000049 ... P0A7S3 N/A
    854353 8p17:r (2.78) BS01 rna ? GO:0000049 ... P0A7S9 N/A
    854354 8p17:r (2.78) BS02 rna ? GO:0000049 ... P0A7S9 N/A
    854355 8p17:s (2.78) BS01 rna ? GO:0000028 ... P0AG59 N/A
    854356 8p17:t (2.78) BS01 rna ? GO:0000028 ... P0ADZ4 N/A
    854357 8p17:t (2.78) BS02 rna ? GO:0000028 ... P0ADZ4 N/A
    854358 8p17:u (2.78) BS01 rna ? GO:0000028 ... P0A7T3 N/A
    854359 8p17:v (2.78) BS01 rna ? GO:0000028 ... P0AG63 N/A
    854360 8p17:w (2.78) BS01 rna ? GO:0002181 ... P0A7T7 N/A
    854361 8p17:x (2.78) BS01 rna ? GO:0002181 ... P0A7U3 N/A
    854362 8p17:y (2.78) BS01 rna ? GO:0000028 ... P0A7U7 N/A
    854363 8p17:z (2.78) BS01 rna ? GO:0000028 ... P68679 N/A
    854364 8p17:z (2.78) BS02 rna ? GO:0000028 ... P68679 N/A
    854365 8p18:6 (2.77) BS01 rna ? GO:0003747 ... P07012 N/A
    854366 8p18:6 (2.77) BS02 rna ? GO:0003747 ... P07012 N/A
    854367 8p18:6 (2.77) BS03 rna ? GO:0003747 ... P07012 N/A
    854368 8p18:6 (2.77) BS04 rna ? GO:0003747 ... P07012 N/A
    854369 8p18:B (2.77) BS01 rna ? GO:0000027 ... P60422 N/A
    854370 8p18:C (2.77) BS01 rna ? GO:0000027 ... P60438 N/A
    854371 8p18:D (2.77) BS01 rna ? GO:0001070 ... P60723 N/A
    854372 8p18:E (2.77) BS01 rna ? GO:0000027 ... P62399 N/A
    854373 8p18:E (2.77) BS02 rna ? GO:0000027 ... P62399 N/A
    854374 8p18:E (2.77) BS03 rna ? GO:0000027 ... P62399 N/A
    854375 8p18:F (2.77) BS01 rna ? GO:0000027 ... P0AG55 N/A
    854376 8p18:G (2.77) BS01 rna ? GO:0002181 ... P0A7R1 N/A
    854377 8p18:I (2.77) BS01 rna ? GO:0000027 ... P0A7J7 N/A
    854378 8p18:J (2.77) BS01 rna ? GO:0002181 ... P0AA10 N/A
    854379 8p18:K (2.77) BS01 rna ? GO:0002181 ... P0ADY3 N/A
    854380 8p18:K (2.77) BS02 rna ? GO:0002181 ... P0ADY3 N/A
    854381 8p18:L (2.77) BS01 rna ? GO:0002181 ... P02413 N/A
    854382 8p18:M (2.77) BS01 rna ? GO:0000027 ... P0ADY7 N/A
    854383 8p18:M (2.77) BS02 rna ? GO:0000027 ... P0ADY7 N/A
    854384 8p18:N (2.77) BS01 rna ? GO:0000027 ... P0AG44 N/A
    854385 8p18:O (2.77) BS01 rna ? GO:0002181 ... P0C018 N/A
    854386 8p18:O (2.77) BS02 rna ? GO:0002181 ... P0C018 N/A
    854387 8p18:P (2.77) BS01 rna ? GO:0000027 ... P0A7K6 N/A
    854388 8p18:P (2.77) BS02 rna ? GO:0000027 ... P0A7K6 N/A
    854389 8p18:Q (2.77) BS01 rna ? GO:0000027 ... P0A7L3 N/A
    854390 8p18:R (2.77) BS01 rna ? GO:0002181 ... P0AG48 N/A
    854391 8p18:S (2.77) BS01 rna ? GO:0002181 ... P61175 N/A
    854392 8p18:T (2.77) BS01 rna ? GO:0000027 ... P0ADZ0 N/A
    854393 8p18:U (2.77) BS01 rna ? GO:0000027 ... P60624 N/A
    854394 8p18:V (2.77) BS01 rna ? GO:0000027 ... P68919 N/A
    854395 8p18:V (2.77) BS02 rna ? GO:0000027 ... P68919 N/A
    854396 8p18:W (2.77) BS01 rna ? GO:0000027 ... P0A7L8 N/A
    854397 8p18:W (2.77) BS02 rna ? GO:0000027 ... P0A7L8 N/A
    854398 8p18:X (2.77) BS01 rna ? GO:0000027 ... P0A7M2 N/A
    854399 8p18:Y (2.77) BS01 rna ? GO:0000027 ... P0A7M6 N/A
    854400 8p18:Z (2.77) BS01 rna ? GO:0000027 ... P0AG51 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).