SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    854401 8pis:F (2.69) BS02 SER N/A N/A N/A N/A
    854402 8pis:F (2.69) BS03 SER N/A N/A N/A N/A
    854403 8pis:F (2.69) BS04 NAD N/A N/A N/A N/A
    854404 8pis:G (2.69) BS01 peptide N/A N/A N/A N/A
    854405 8pis:G (2.69) BS02 NAD N/A N/A N/A N/A
    854406 8pis:G (2.69) BS03 SER N/A N/A N/A N/A
    854407 8pis:G (2.69) BS04 SER N/A N/A N/A N/A
    854408 8pis:H (2.69) BS01 peptide N/A N/A N/A N/A
    854409 8pis:H (2.69) BS02 SER N/A N/A N/A N/A
    854410 8pis:H (2.69) BS03 NAD N/A N/A N/A N/A
    854411 8pis:H (2.69) BS04 SER N/A N/A N/A N/A
    854412 8piw:A (1.72) BS01 ZHT N/A GO:0003796 ... P00698 38738452
    854413 8piy:A (-1.00) BS01 Z5I N/A GO:0003924 ... P01116 N/A
    854414 8piz:A (2.75) BS01 G3P ? GO:0007155 ... A0A9K2KM41 38499587
    854415 8piz:A (2.75) BS02 B6D ? GO:0007155 ... A0A9K2KM41 38499587
    854416 8piz:B (2.75) BS01 G3P N/A N/A N/A 38499587
    854417 8pj0:A (1.7) BS01 ZHX 2.3.1.179 GO:0004315 ... O54440 38665834
    854418 8pj0:B (1.7) BS01 ZHX 2.3.1.179 GO:0004315 ... O54440 38665834
    854419 8pj0:C (1.7) BS01 ZHX 2.3.1.179 GO:0004315 ... O54440 38665834
    854420 8pj0:D (1.7) BS01 ZHX 2.3.1.179 GO:0004315 ... O54440 38665834
    854421 8pj1:1 (3.4) BS01 rna N/A GO:0001732 ... P55884 39289545
    854422 8pj1:B (3.4) BS01 rna N/A GO:0002181 ... P62280 39289545
    854423 8pj1:C (3.4) BS01 rna N/A GO:0002181 ... P62701 39289545
    854424 8pj1:D (3.4) BS01 rna N/A GO:0002181 ... P46781 39289545
    854425 8pj1:E (3.4) BS01 rna N/A GO:0002181 ... P62266 39289545
    854426 8pj1:F (3.4) BS01 rna N/A GO:0003735 ... P62861 39289545
    854427 8pj1:F (3.4) BS02 rna N/A GO:0003735 ... P62861 39289545
    854428 8pj1:G (3.4) BS01 rna N/A GO:0001843 ... P62081 39289545
    854429 8pj1:H (3.4) BS01 rna N/A GO:0000028 ... P42677 39289545
    854430 8pj1:I (3.4) BS01 rna N/A GO:0002181 ... P62277 39289545
    854431 8pj1:J (3.4) BS01 rna N/A GO:0002181 ... P62244 39289545
    854432 8pj1:L (3.4) BS01 rna N/A GO:0002181 ... P15880 39289545
    854433 8pj1:M (3.4) BS01 rna N/A GO:0002181 ... P08708 39289545
    854434 8pj1:N (3.4) BS01 rna N/A GO:0000028 ... P08865 39289545
    854435 8pj1:O (3.4) BS01 rna N/A GO:0002181 ... P61247 39289545
    854436 8pj1:P (3.4) BS01 rna N/A GO:0000028 ... P62263 39289545
    854437 8pj1:Q (3.4) BS01 rna N/A GO:0002181 ... P62854 39289545
    854438 8pj1:Q (3.4) BS02 rna N/A GO:0002181 ... P62854 39289545
    854439 8pj1:Q (3.4) BS03 ZN N/A GO:0002181 ... P62854 39289545
    854440 8pj1:R (3.4) BS01 rna N/A GO:0000462 ... P62241 39289545
    854441 8pj1:S (3.4) BS01 rna N/A GO:0000082 ... P62753 39289545
    854442 8pj1:T (3.4) BS01 rna N/A GO:0002181 ... P62847 39289545
    854443 8pj1:V (3.4) BS01 rna N/A GO:0000028 ... P46782 39289545
    854444 8pj1:V (3.4) BS02 rna N/A GO:0000028 ... P46782 39289545
    854445 8pj1:V (3.4) BS03 MG N/A GO:0000028 ... P46782 39289545
    854446 8pj1:Y (3.4) BS01 rna N/A GO:0000462 ... P62249 39289545
    854447 8pj1:Z (3.4) BS01 rna N/A GO:0000977 ... P23396 39289545
    854448 8pj1:Z (3.4) BS02 rna N/A GO:0000977 ... P23396 39289545
    854449 8pj1:a (3.4) BS01 rna N/A GO:0002181 ... P46783 39289545
    854450 8pj1:b (3.4) BS01 rna N/A GO:0000028 ... P62841 39289545
    854451 8pj1:c (3.4) BS01 rna N/A GO:0001891 ... P63244 39289545
    854452 8pj1:d (3.4) BS01 rna N/A GO:0000028 ... P39019 39289545
    854453 8pj1:e (3.4) BS01 rna N/A GO:0002181 ... P62851 39289545
    854454 8pj1:f (3.4) BS01 rna N/A GO:0002181 ... P62269 39289545
    854455 8pj1:f (3.4) BS02 MG N/A GO:0002181 ... P62269 39289545
    854456 8pj1:h (3.4) BS01 rna N/A GO:0002181 ... P60866 39289545
    854457 8pj1:i (3.4) BS01 rna N/A GO:0002181 ... P62273 39289545
    854458 8pj1:k (3.4) BS01 rna N/A GO:0003735 ... P62979 39289545
    854459 8pj1:k (3.4) BS02 ZN N/A GO:0003735 ... P62979 39289545
    854460 8pj1:m (3.4) BS01 rna N/A GO:0002181 ... P25398 39289545
    854461 8pj1:n (3.4) BS01 rna N/A GO:0000028 ... P62857 39289545
    854462 8pj1:o (3.4) BS01 rna N/A GO:0001732 ... O75821 39289545
    854463 8pj1:p (3.4) BS01 rna N/A GO:0003723 ... P41567 39289545
    854464 8pj1:q (3.4) BS01 rna N/A GO:0000049 ... P47813 39289545
    854465 8pj1:q (3.4) BS02 rna N/A GO:0000049 ... P47813 39289545
    854466 8pj1:r (3.4) BS01 rna N/A GO:0000423 ... P05198 39289545
    854467 8pj1:r (3.4) BS02 rna N/A GO:0000423 ... P05198 39289545
    854468 8pj1:s (3.4) BS01 rna N/A GO:0001701 ... P20042 39289545
    854469 8pj1:s (3.4) BS02 rna N/A GO:0001701 ... P20042 39289545
    854470 8pj1:s (3.4) BS03 ZN N/A GO:0001701 ... P20042 39289545
    854471 8pj1:s (3.4) BS04 GTP N/A GO:0001701 ... P20042 39289545
    854472 8pj1:t (3.4) BS01 rna N/A GO:0000049 ... P41091 39289545
    854473 8pj1:t (3.4) BS02 GTP N/A GO:0000049 ... P41091 39289545
    854474 8pj1:t (3.4) BS03 MG N/A GO:0000049 ... P41091 39289545
    854475 8pj1:u (3.4) BS01 rna N/A GO:0001732 ... Q14152 39289545
    854476 8pj1:x (3.4) BS01 rna N/A GO:0001732 ... O15371 39289545
    854477 8pj1:y (3.4) BS01 rna N/A GO:0001732 ... Q99613 39289545
    854478 8pj1:y (3.4) BS02 rna N/A GO:0001732 ... Q99613 39289545
    854479 8pj2:1 (3.4) BS01 rna N/A GO:0001732 ... P55884 39289545
    854480 8pj2:B (3.4) BS01 rna N/A GO:0002181 ... P62280 39289545
    854481 8pj2:C (3.4) BS01 rna N/A GO:0002181 ... P62701 39289545
    854482 8pj2:D (3.4) BS01 rna N/A GO:0002181 ... P46781 39289545
    854483 8pj2:E (3.4) BS01 rna N/A GO:0002181 ... P62266 39289545
    854484 8pj2:F (3.4) BS01 rna N/A GO:0003735 ... P62861 39289545
    854485 8pj2:G (3.4) BS01 rna N/A GO:0001843 ... P62081 39289545
    854486 8pj2:H (3.4) BS01 rna N/A GO:0000028 ... P42677 39289545
    854487 8pj2:I (3.4) BS01 rna N/A GO:0002181 ... P62277 39289545
    854488 8pj2:J (3.4) BS01 rna N/A GO:0002181 ... P62244 39289545
    854489 8pj2:L (3.4) BS01 rna N/A GO:0002181 ... P15880 39289545
    854490 8pj2:M (3.4) BS01 rna N/A GO:0002181 ... P08708 39289545
    854491 8pj2:N (3.4) BS01 rna N/A GO:0000028 ... P08865 39289545
    854492 8pj2:O (3.4) BS01 rna N/A GO:0002181 ... P61247 39289545
    854493 8pj2:P (3.4) BS01 rna N/A GO:0000028 ... P62263 39289545
    854494 8pj2:Q (3.4) BS01 rna N/A GO:0002181 ... P62854 39289545
    854495 8pj2:Q (3.4) BS02 ZN N/A GO:0002181 ... P62854 39289545
    854496 8pj2:R (3.4) BS01 rna N/A GO:0000462 ... P62241 39289545
    854497 8pj2:S (3.4) BS01 rna N/A GO:0000082 ... P62753 39289545
    854498 8pj2:T (3.4) BS01 rna N/A GO:0002181 ... P62847 39289545
    854499 8pj2:V (3.4) BS01 rna N/A GO:0000028 ... P46782 39289545
    854500 8pj2:V (3.4) BS02 MG N/A GO:0000028 ... P46782 39289545
    854501 8pj2:Y (3.4) BS01 rna N/A GO:0000462 ... P62249 39289545
    854502 8pj2:Z (3.4) BS01 rna N/A GO:0000977 ... P23396 39289545
    854503 8pj2:Z (3.4) BS02 rna N/A GO:0000977 ... P23396 39289545
    854504 8pj2:a (3.4) BS01 rna N/A GO:0002181 ... P46783 39289545
    854505 8pj2:b (3.4) BS01 rna N/A GO:0000028 ... P62841 39289545
    854506 8pj2:b (3.4) BS02 rna N/A GO:0000028 ... P62841 39289545
    854507 8pj2:b (3.4) BS03 rna N/A GO:0000028 ... P62841 39289545
    854508 8pj2:c (3.4) BS01 rna N/A GO:0001891 ... P63244 39289545
    854509 8pj2:d (3.4) BS01 rna N/A GO:0000028 ... P39019 39289545
    854510 8pj2:e (3.4) BS01 rna N/A GO:0002181 ... P62851 39289545
    854511 8pj2:e (3.4) BS02 rna N/A GO:0002181 ... P62851 39289545
    854512 8pj2:f (3.4) BS01 rna N/A GO:0002181 ... P62269 39289545
    854513 8pj2:f (3.4) BS02 rna N/A GO:0002181 ... P62269 39289545
    854514 8pj2:f (3.4) BS03 MG N/A GO:0002181 ... P62269 39289545
    854515 8pj2:h (3.4) BS01 rna N/A GO:0002181 ... P60866 39289545
    854516 8pj2:i (3.4) BS01 rna N/A GO:0002181 ... P62273 39289545
    854517 8pj2:i (3.4) BS02 MG N/A GO:0002181 ... P62273 39289545
    854518 8pj2:i (3.4) BS03 MG N/A GO:0002181 ... P62273 39289545
    854519 8pj2:k (3.4) BS01 rna N/A GO:0002181 ... P62979 39289545
    854520 8pj2:k (3.4) BS02 ZN N/A GO:0002181 ... P62979 39289545
    854521 8pj2:m (3.4) BS01 rna N/A GO:0002181 ... P25398 39289545
    854522 8pj2:n (3.4) BS01 rna N/A GO:0000028 ... P62857 39289545
    854523 8pj2:o (3.4) BS01 rna N/A GO:0001732 ... O75821 39289545
    854524 8pj2:q (3.4) BS01 rna N/A GO:0000049 ... P47813 39289545
    854525 8pj2:q (3.4) BS02 rna N/A GO:0000049 ... P47813 39289545
    854526 8pj2:q (3.4) BS03 rna N/A GO:0000049 ... P47813 39289545
    854527 8pj2:r (3.4) BS01 rna N/A GO:0000423 ... P05198 39289545
    854528 8pj2:r (3.4) BS02 rna N/A GO:0000423 ... P05198 39289545
    854529 8pj2:t (3.4) BS01 rna N/A GO:0000049 ... P41091 39289545
    854530 8pj2:u (3.4) BS01 rna N/A GO:0001732 ... Q14152 39289545
    854531 8pj2:x (3.4) BS01 rna N/A GO:0001732 ... O15371 39289545
    854532 8pj2:y (3.4) BS01 rna N/A GO:0001732 ... Q99613 39289545
    854533 8pj2:y (3.4) BS02 rna N/A GO:0001732 ... Q99613 39289545
    854534 8pj2:z (3.4) BS01 rna N/A GO:0001732 ... P55010 39289545
    854535 8pj2:z (3.4) BS02 rna N/A GO:0001732 ... P55010 39289545
    854536 8pj3:0 (3.7) BS01 rna N/A GO:0000049 ... O60841 39289545
    854537 8pj3:0 (3.7) BS02 rna N/A GO:0000049 ... O60841 39289545
    854538 8pj3:0 (3.7) BS03 GTP N/A GO:0000049 ... O60841 39289545
    854539 8pj3:0 (3.7) BS04 MG N/A GO:0000049 ... O60841 39289545
    854540 8pj3:1 (3.7) BS01 rna N/A GO:0001732 ... P55884 39289545
    854541 8pj3:B (3.7) BS01 rna N/A GO:0002181 ... P62280 39289545
    854542 8pj3:C (3.7) BS01 rna N/A GO:0002181 ... P62701 39289545
    854543 8pj3:D (3.7) BS01 rna N/A GO:0002181 ... P46781 39289545
    854544 8pj3:E (3.7) BS01 rna N/A GO:0002181 ... P62266 39289545
    854545 8pj3:F (3.7) BS01 rna N/A GO:0002181 ... P62861 39289545
    854546 8pj3:F (3.7) BS02 rna N/A GO:0002181 ... P62861 39289545
    854547 8pj3:G (3.7) BS01 rna N/A GO:0001843 ... P62081 39289545
    854548 8pj3:H (3.7) BS01 rna N/A GO:0000028 ... P42677 39289545
    854549 8pj3:I (3.7) BS01 rna N/A GO:0002181 ... P62277 39289545
    854550 8pj3:J (3.7) BS01 rna N/A GO:0002181 ... P62244 39289545
    854551 8pj3:L (3.7) BS01 rna N/A GO:0002181 ... P15880 39289545
    854552 8pj3:L (3.7) BS02 rna N/A GO:0002181 ... P15880 39289545
    854553 8pj3:M (3.7) BS01 rna N/A GO:0002181 ... P08708 39289545
    854554 8pj3:N (3.7) BS01 rna N/A GO:0000028 ... P08865 39289545
    854555 8pj3:O (3.7) BS01 rna N/A GO:0002181 ... P61247 39289545
    854556 8pj3:P (3.7) BS01 rna N/A GO:0000028 ... P62263 39289545
    854557 8pj3:Q (3.7) BS01 rna N/A GO:0002181 ... P62854 39289545
    854558 8pj3:Q (3.7) BS02 rna N/A GO:0002181 ... P62854 39289545
    854559 8pj3:Q (3.7) BS03 ZN N/A GO:0002181 ... P62854 39289545
    854560 8pj3:R (3.7) BS01 rna N/A GO:0000462 ... P62241 39289545
    854561 8pj3:S (3.7) BS01 rna N/A GO:0000082 ... P62753 39289545
    854562 8pj3:T (3.7) BS01 rna N/A GO:0002181 ... P62847 39289545
    854563 8pj3:V (3.7) BS01 rna N/A GO:0000028 ... P46782 39289545
    854564 8pj3:Y (3.7) BS01 rna N/A GO:0000462 ... P62249 39289545
    854565 8pj3:Z (3.7) BS01 rna N/A GO:0000977 ... P23396 39289545
    854566 8pj3:Z (3.7) BS02 rna N/A GO:0000977 ... P23396 39289545
    854567 8pj3:a (3.7) BS01 rna N/A GO:0002181 ... P46783 39289545
    854568 8pj3:b (3.7) BS01 rna N/A GO:0000028 ... P62841 39289545
    854569 8pj3:b (3.7) BS02 rna N/A GO:0000028 ... P62841 39289545
    854570 8pj3:b (3.7) BS03 rna N/A GO:0000028 ... P62841 39289545
    854571 8pj3:c (3.7) BS01 rna N/A GO:0001891 ... P63244 39289545
    854572 8pj3:d (3.7) BS01 rna N/A GO:0000028 ... P39019 39289545
    854573 8pj3:e (3.7) BS01 rna N/A GO:0002181 ... P62851 39289545
    854574 8pj3:f (3.7) BS01 rna N/A GO:0002181 ... P62269 39289545
    854575 8pj3:f (3.7) BS02 rna N/A GO:0002181 ... P62269 39289545
    854576 8pj3:f (3.7) BS03 MG N/A GO:0002181 ... P62269 39289545
    854577 8pj3:h (3.7) BS01 rna N/A GO:0002181 ... P60866 39289545
    854578 8pj3:i (3.7) BS01 rna N/A GO:0002181 ... P62273 39289545
    854579 8pj3:k (3.7) BS01 rna N/A GO:0002181 ... P62979 39289545
    854580 8pj3:k (3.7) BS02 ZN N/A GO:0002181 ... P62979 39289545
    854581 8pj3:m (3.7) BS01 rna N/A GO:0002181 ... P25398 39289545
    854582 8pj3:n (3.7) BS01 rna N/A GO:0000028 ... P62857 39289545
    854583 8pj3:n (3.7) BS02 rna N/A GO:0000028 ... P62857 39289545
    854584 8pj3:o (3.7) BS01 rna N/A GO:0001732 ... O75821 39289545
    854585 8pj3:q (3.7) BS01 rna N/A GO:0000049 ... P47813 39289545
    854586 8pj3:q (3.7) BS02 rna N/A GO:0000049 ... P47813 39289545
    854587 8pj3:q (3.7) BS03 rna N/A GO:0000049 ... P47813 39289545
    854588 8pj3:r (3.7) BS01 rna N/A GO:0000423 ... P05198 39289545
    854589 8pj3:r (3.7) BS02 rna N/A GO:0000423 ... P05198 39289545
    854590 8pj3:u (3.7) BS01 rna N/A GO:0001732 ... Q14152 39289545
    854591 8pj3:x (3.7) BS01 rna N/A GO:0001732 ... O15371 39289545
    854592 8pj3:x (3.7) BS02 rna N/A GO:0001732 ... O15371 39289545
    854593 8pj3:y (3.7) BS01 rna N/A GO:0001732 ... Q99613 39289545
    854594 8pj3:y (3.7) BS02 rna N/A GO:0001732 ... Q99613 39289545
    854595 8pj3:z (3.7) BS01 rna N/A GO:0001732 ... P55010 39289545
    854596 8pj3:z (3.7) BS02 rna N/A GO:0001732 ... P55010 39289545
    854597 8pj4:0 (3.2) BS01 rna N/A GO:0000049 ... O60841 39289545
    854598 8pj4:0 (3.2) BS02 rna N/A GO:0000049 ... O60841 39289545
    854599 8pj4:0 (3.2) BS03 GTP N/A GO:0000049 ... O60841 39289545
    854600 8pj4:0 (3.2) BS04 MG N/A GO:0000049 ... O60841 39289545

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).