SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    854401 8p18:Z (2.77) BS02 rna ? GO:0000027 ... P0AG51 N/A
    854402 8p18:a (2.77) BS01 rna ? GO:0002181 ... P0A7M9 N/A
    854403 8p18:a (2.77) BS02 rna ? GO:0002181 ... P0A7M9 N/A
    854404 8p18:a (2.77) BS03 ZN ? GO:0002181 ... P0A7M9 N/A
    854405 8p18:b (2.77) BS01 rna ? GO:0000027 ... P0A7N4 N/A
    854406 8p18:c (2.77) BS01 rna ? GO:0000027 ... P0A7N9 N/A
    854407 8p18:d (2.77) BS01 rna ? GO:0002181 ... P0A7P5 N/A
    854408 8p18:e (2.77) BS01 rna ? GO:0002181 ... P0A7Q1 N/A
    854409 8p18:f (2.77) BS01 rna ? GO:0002181 ... P0A7Q6 N/A
    854410 8p18:f (2.77) BS02 ZN ? GO:0002181 ... P0A7Q6 N/A
    854411 8p18:g (2.77) BS01 rna ? GO:0000028 ... P0A7V0 N/A
    854412 8p18:h (2.77) BS01 rna ? GO:0000028 ... P0A7V3 N/A
    854413 8p18:i (2.77) BS01 rna ? GO:0000028 ... P0A7V8 N/A
    854414 8p18:j (2.77) BS01 rna ? GO:0000028 ... P0A7W1 N/A
    854415 8p18:j (2.77) BS02 rna ? GO:0000028 ... P0A7W1 N/A
    854416 8p18:k (2.77) BS01 rna ? GO:0002181 ... P02358 N/A
    854417 8p18:l (2.77) BS01 rna ? GO:0000028 ... P02359 N/A
    854418 8p18:l (2.77) BS02 rna ? GO:0000028 ... P02359 N/A
    854419 8p18:m (2.77) BS01 rna ? GO:0000028 ... P0A7W7 N/A
    854420 8p18:n (2.77) BS01 rna ? GO:0002181 ... P0A7X3 N/A
    854421 8p18:n (2.77) BS02 rna ? GO:0002181 ... P0A7X3 N/A
    854422 8p18:o (2.77) BS01 rna ? GO:0000049 ... P0A7R5 N/A
    854423 8p18:p (2.77) BS01 rna ? GO:0002181 ... P0A7R9 N/A
    854424 8p18:q (2.77) BS01 rna ? GO:0000049 ... P0A7S3 N/A
    854425 8p18:r (2.77) BS01 rna ? GO:0000049 ... P0A7S9 N/A
    854426 8p18:r (2.77) BS02 rna ? GO:0000049 ... P0A7S9 N/A
    854427 8p18:s (2.77) BS01 rna ? GO:0000028 ... P0AG59 N/A
    854428 8p18:t (2.77) BS01 rna ? GO:0000028 ... P0ADZ4 N/A
    854429 8p18:t (2.77) BS02 rna ? GO:0000028 ... P0ADZ4 N/A
    854430 8p18:u (2.77) BS01 rna ? GO:0000028 ... P0A7T3 N/A
    854431 8p18:v (2.77) BS01 rna ? GO:0000028 ... P0AG63 N/A
    854432 8p18:w (2.77) BS01 rna ? GO:0002181 ... P0A7T7 N/A
    854433 8p18:x (2.77) BS01 rna ? GO:0002181 ... P0A7U3 N/A
    854434 8p18:y (2.77) BS01 rna ? GO:0000028 ... P0A7U7 N/A
    854435 8p18:z (2.77) BS01 rna ? GO:0000028 ... P68679 N/A
    854436 8p18:z (2.77) BS02 rna ? GO:0000028 ... P68679 N/A
    854437 8p1c:A (1.58) BS01 NA 3.2.1.17 GO:0003796 ... P00698 37830774
    854438 8p1d:A (1.6) BS01 NA 3.2.1.17 GO:0003796 ... P00698 37830774
    854439 8p1e:D (2.1) BS01 WD2 ? GO:0004888 ... P58154 40896114
    854440 8p1e:E (2.1) BS01 WD2 ? GO:0004888 ... P58154 40896114
    854441 8p1e:I (2.1) BS01 WD2 ? GO:0004888 ... P58154 40896114
    854442 8p1e:J (2.1) BS01 WD2 ? GO:0004888 ... P58154 40896114
    854443 8p1f:A (2.1) BS01 WCW ? GO:0004888 ... P58154 40896114
    854444 8p1f:E (2.1) BS01 WCW ? GO:0004888 ... P58154 40896114
    854445 8p1f:G (2.1) BS01 WCW ? GO:0004888 ... P58154 40896114
    854446 8p1f:H (2.1) BS01 WCW ? GO:0004888 ... P58154 40896114
    854447 8p1f:I (2.1) BS01 WCW ? GO:0004888 ... P58154 40896114
    854448 8p1h:A (1.95) BS01 AZI ? N/A P36544
    P63104
    37804592
    854449 8p1i:A (2.97) BS01 WQW ? GO:0005886 ... A0A332Z023 38177534
    854450 8p1i:B (2.97) BS01 WR6 ? GO:0005886 ... A0A332Z023 38177534
    854451 8p1m:A (3.23) BS01 rna 2.7.7.48
    3.1.-.-
    GO:0000166 ... P23456 39652621
    854452 8p1m:A (3.23) BS02 ATP 2.7.7.48
    3.1.-.-
    GO:0000166 ... P23456 39652621
    854453 8p1m:A (3.23) BS03 MG 2.7.7.48
    3.1.-.-
    GO:0000166 ... P23456 39652621
    854454 8p1m:A (3.23) BS04 MG 2.7.7.48
    3.1.-.-
    GO:0000166 ... P23456 39652621
    854455 8p1n:A (2.79) BS01 rna 2.7.7.48
    3.1.-.-
    GO:0000166 ... P23456 39652621
    854456 8p1o:A (2.17) BS01 WEW ? N/A Q9NZQ7 38229762
    854457 8p1o:B (2.17) BS01 WEW ? N/A Q9NZQ7 38229762
    854458 8p1p:A (2.76) BS01 WF0 3.4.19.12 GO:0004843 ... Q96RU2 38816515
    854459 8p1p:B (2.76) BS01 WF0 3.4.19.12 GO:0004843 ... Q96RU2 38816515
    854460 8p1q:A (2.79) BS01 WFT 3.4.19.12 GO:0004843 ... Q96RU2 38816515
    854461 8p1q:B (2.79) BS01 WFT 3.4.19.12 GO:0004843 ... Q96RU2 38816515
    854462 8p1s:A (1.9) BS01 FUC N/A GO:0004560 ... A0A0F4KU40 38890439
    854463 8p1s:B (1.9) BS01 FUC N/A GO:0004560 ... A0A0F4KU40 38890439
    854464 8p1s:C (1.9) BS01 FUC N/A GO:0004560 ... A0A0F4KU40 38890439
    854465 8p1s:D (1.9) BS01 FUC N/A GO:0004560 ... A0A0F4KU40 38890439
    854466 8p1s:E (1.9) BS01 FUC N/A GO:0004560 ... A0A0F4KU40 38890439
    854467 8p1s:F (1.9) BS01 FUC N/A GO:0004560 ... A0A0F4KU40 38890439
    854468 8p1t:AAA (1.442) BS01 SAM 2.5.1.6 GO:0004478 ... P31153 37591318
    854469 8p1t:AAA (1.442) BS02 WJL 2.5.1.6 GO:0004478 ... P31153 37591318
    854470 8p1v:AAA (1.54) BS01 SAM 2.5.1.6 GO:0004478 ... P31153 37591318
    854471 8p1v:AAA (1.54) BS02 WIV 2.5.1.6 GO:0004478 ... P31153 37591318
    854472 8p1w:AAA (1.15) BS01 MTA 2.5.1.6 GO:0004478 ... P31153 37591318
    854473 8p1w:AAA (1.15) BS02 WK5 2.5.1.6 GO:0004478 ... P31153 37591318
    854474 8p1x:AAA (2.03) BS01 PO4 N/A GO:0016757 ... N/A 38000019
    854475 8p1x:AAA (2.03) BS02 PO4 N/A GO:0016757 ... N/A 38000019
    854476 8p1x:AAA (2.03) BS03 UPG N/A GO:0016757 ... N/A 38000019
    854477 8p20:AAA (2.848) BS01 BJT N/A GO:0016757 ... N/A 38000019
    854478 8p20:AAA (2.848) BS02 UDP N/A GO:0016757 ... N/A 38000019
    854479 8p20:BBB (2.848) BS01 BJT N/A GO:0016757 ... N/A 38000019
    854480 8p20:BBB (2.848) BS02 UDP N/A GO:0016757 ... N/A 38000019
    854481 8p20:CCC (2.848) BS01 BJT N/A GO:0016757 ... N/A 38000019
    854482 8p20:CCC (2.848) BS02 UDP N/A GO:0016757 ... N/A 38000019
    854483 8p20:DDD (2.848) BS01 BJT N/A GO:0016757 ... N/A 38000019
    854484 8p20:DDD (2.848) BS02 UDP N/A GO:0016757 ... N/A 38000019
    854485 8p22:A (2.2) BS01 WNO ? GO:0004888 ... P58154 40896114
    854486 8p22:A (2.2) BS02 WNO ? GO:0004888 ... P58154 40896114
    854487 8p22:B (2.2) BS01 WNO ? GO:0004888 ... P58154 40896114
    854488 8p22:B (2.2) BS02 WNO ? GO:0004888 ... P58154 40896114
    854489 8p22:C (2.2) BS01 WNO ? GO:0004888 ... P58154 40896114
    854490 8p22:C (2.2) BS02 WNO ? GO:0004888 ... P58154 40896114
    854491 8p22:D (2.2) BS01 WNO ? GO:0004888 ... P58154 40896114
    854492 8p22:E (2.2) BS01 WNO ? GO:0004888 ... P58154 40896114
    854493 8p22:E (2.2) BS02 WNO ? GO:0004888 ... P58154 40896114
    854494 8p22:F (2.2) BS01 WNO ? GO:0004888 ... P58154 40896114
    854495 8p22:G (2.2) BS01 WNO ? GO:0004888 ... P58154 40896114
    854496 8p22:H (2.2) BS01 WNO ? GO:0004888 ... P58154 40896114
    854497 8p22:H (2.2) BS02 WNO ? GO:0004888 ... P58154 40896114
    854498 8p22:I (2.2) BS01 WNO ? GO:0004888 ... P58154 40896114
    854499 8p22:I (2.2) BS02 WNO ? GO:0004888 ... P58154 40896114
    854500 8p22:J (2.2) BS01 WNO ? GO:0004888 ... P58154 40896114
    854501 8p22:J (2.2) BS02 WNO ? GO:0004888 ... P58154 40896114
    854502 8p23:A (3.17) BS01 ATP 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854503 8p23:A (3.17) BS02 ATP 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854504 8p23:B (3.17) BS01 CTP 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854505 8p23:B (3.17) BS02 ATP 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854506 8p23:B (3.17) BS03 ATP 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854507 8p23:B (3.17) BS04 ZN 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854508 8p27:A (2.73) BS01 DTP 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854509 8p27:A (2.73) BS02 MG 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854510 8p27:A (2.73) BS03 DTP 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854511 8p27:B (2.73) BS01 DTP 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854512 8p27:B (2.73) BS02 DTP 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854513 8p27:B (2.73) BS03 MG 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854514 8p28:A (2.77) BS01 DTP 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854515 8p28:A (2.77) BS02 DTP 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854516 8p28:A (2.77) BS03 DTP 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854517 8p28:A (2.77) BS04 MG 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854518 8p28:A (2.77) BS05 DTP 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854519 8p28:B (2.77) BS01 DTP 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854520 8p28:B (2.77) BS02 DTP 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854521 8p28:B (2.77) BS03 DTP 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854522 8p28:B (2.77) BS04 DTP 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854523 8p28:B (2.77) BS05 MG 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854524 8p28:C (2.77) BS01 DTP 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854525 8p28:C (2.77) BS02 DTP 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854526 8p28:C (2.77) BS03 DTP 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854527 8p28:C (2.77) BS04 MG 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854528 8p28:C (2.77) BS05 DTP 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854529 8p28:D (2.77) BS01 DTP 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854530 8p28:D (2.77) BS02 DTP 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854531 8p28:D (2.77) BS03 DTP 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854532 8p29:A (2.06) BS01 WJC ? N/A Q15562 37770003
    854533 8p2a:A (2.0) BS01 FMN ? GO:0010181 ... A0A0K8PVQ4 37455753
    854534 8p2b:A (2.6) BS01 FMN N/A GO:0010181 ... N/A 37455753
    854535 8p2b:B (2.6) BS01 FMN N/A GO:0010181 ... N/A 37455753
    854536 8p2c:A (2.59) BS01 DTP 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854537 8p2c:A (2.59) BS02 DTP 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854538 8p2c:A (2.59) BS03 DTP 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854539 8p2c:A (2.59) BS04 MG 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854540 8p2c:A (2.59) BS05 DTP 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854541 8p2c:B (2.59) BS01 DTP 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854542 8p2c:B (2.59) BS02 DTP 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854543 8p2c:B (2.59) BS03 DTP 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854544 8p2c:B (2.59) BS04 DTP 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854545 8p2c:B (2.59) BS05 MG 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854546 8p2c:C (2.59) BS01 DTP 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854547 8p2c:C (2.59) BS02 DTP 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854548 8p2c:C (2.59) BS03 DTP 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854549 8p2c:C (2.59) BS04 MG 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854550 8p2c:C (2.59) BS05 DTP 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854551 8p2c:D (2.59) BS01 DTP 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854552 8p2c:D (2.59) BS02 DTP 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854553 8p2c:D (2.59) BS03 DTP 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854554 8p2c:D (2.59) BS04 DTP 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854555 8p2c:D (2.59) BS05 MG 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854556 8p2d:A (2.59) BS01 DTP 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854557 8p2d:A (2.59) BS02 DTP 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854558 8p2d:B (2.59) BS01 DTP 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854559 8p2d:B (2.59) BS02 DTP 1.17.4.2 GO:0000166 ... A0A3E4SF67 38968292
    854560 8p2f:1 (2.44) BS01 rna ? GO:0003735 ... Q2FZ60 38902339
    854561 8p2f:2 (2.44) BS01 rna ? GO:0003735 ... Q2FW14 38902339
    854562 8p2f:3 (2.44) BS01 rna ? GO:0003735 ... P0A0G2 38902339
    854563 8p2f:3 (2.44) BS02 rna ? GO:0003735 ... P0A0G2 38902339
    854564 8p2f:4 (2.44) BS01 rna ? GO:0003735 ... Q2FWD8 38902339
    854565 8p2f:4 (2.44) BS02 rna ? GO:0003735 ... Q2FWD8 38902339
    854566 8p2f:5 (2.44) BS01 rna ? GO:0003735 ... Q2FZF1 38902339
    854567 8p2f:5 (2.44) BS02 ZN ? GO:0003735 ... Q2FZF1 38902339
    854568 8p2f:6 (2.44) BS01 rna ? GO:0003735 ... Q2FYU6 38902339
    854569 8p2f:7 (2.44) BS01 rna ? GO:0003735 ... Q2FUQ0 38902339
    854570 8p2f:8 (2.44) BS01 rna ? GO:0003735 ... Q2FXQ0 38902339
    854571 8p2f:8 (2.44) BS02 MG ? GO:0003735 ... Q2FXQ0 38902339
    854572 8p2f:9 (2.44) BS01 rna ? GO:0003735 ... Q2FW29 38902339
    854573 8p2f:9 (2.44) BS02 ZN ? GO:0003735 ... Q2FW29 38902339
    854574 8p2f:E (2.44) BS01 rna ? GO:0003746 ... Q2G0N1 38902339
    854575 8p2f:E (2.44) BS02 rna ? GO:0003746 ... Q2G0N1 38902339
    854576 8p2f:E (2.44) BS03 rna ? GO:0003746 ... Q2G0N1 38902339
    854577 8p2f:E (2.44) BS04 rna ? GO:0003746 ... Q2G0N1 38902339
    854578 8p2f:E (2.44) BS05 GDP ? GO:0003746 ... Q2G0N1 38902339
    854579 8p2f:E (2.44) BS06 WUX ? GO:0003746 ... Q2G0N1 38902339
    854580 8p2f:G (2.44) BS01 rna ? GO:0002181 ... P60430 38902339
    854581 8p2f:H (2.44) BS01 rna ? GO:0003735 ... Q2FW06 38902339
    854582 8p2f:I (2.44) BS01 rna ? GO:0003735 ... Q2FW07 38902339
    854583 8p2f:J (2.44) BS01 rna ? GO:0000049 ... Q2FW18 38902339
    854584 8p2f:J (2.44) BS02 rna ? GO:0000049 ... Q2FW18 38902339
    854585 8p2f:J (2.44) BS03 rna ? GO:0000049 ... Q2FW18 38902339
    854586 8p2f:K (2.44) BS01 rna ? GO:0002181 ... Q2FW21 38902339
    854587 8p2f:M (2.44) BS01 rna ? GO:0003729 ... Q2FW38 38902339
    854588 8p2f:N (2.44) BS01 rna ? GO:0003735 ... Q2FW16 38902339
    854589 8p2f:N (2.44) BS02 rna ? GO:0003735 ... Q2FW16 38902339
    854590 8p2f:O (2.44) BS01 rna ? GO:0003735 ... P0A0F8 38902339
    854591 8p2f:P (2.44) BS01 rna ? GO:0003735 ... Q2FW13 38902339
    854592 8p2f:P (2.44) BS02 rna ? GO:0003735 ... Q2FW13 38902339
    854593 8p2f:Q (2.44) BS01 rna ? GO:0003735 ... Q2FW33 38902339
    854594 8p2f:R (2.44) BS01 rna ? GO:0003735 ... Q2FW22 38902339
    854595 8p2f:R (2.44) BS02 rna ? GO:0003735 ... Q2FW22 38902339
    854596 8p2f:S (2.44) BS01 rna ? GO:0003735 ... Q2FZ42 38902339
    854597 8p2f:S (2.44) BS02 rna ? GO:0003735 ... Q2FZ42 38902339
    854598 8p2f:T (2.44) BS01 rna ? GO:0000027 ... Q2FXQ1 38902339
    854599 8p2f:U (2.44) BS01 rna ? GO:0003723 ... Q2FXS8 38902339
    854600 8p2f:V (2.44) BS01 rna ? GO:0003735 ... Q2FW11 38902339

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).