SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    854601 8p2f:W (2.44) BS01 rna ? GO:0003735 ... Q2FW08 38902339
    854602 8p2f:X (2.44) BS01 rna ? GO:0003723 ... Q2FW17 38902339
    854603 8p2f:Y (2.44) BS01 rna ? GO:0003723 ... Q2G0S0 38902339
    854604 8p2f:Z (2.44) BS01 rna ? GO:0003735 ... Q2FXT0 38902339
    854605 8p2f:Z (2.44) BS02 rna ? GO:0003735 ... Q2FXT0 38902339
    854606 8p2f:c (2.44) BS01 rna ? GO:0003735 ... Q2FZ25 38902339
    854607 8p2f:d (2.44) BS01 rna ? GO:0003676 ... Q2FW12 38902339
    854608 8p2f:e (2.44) BS01 rna ? GO:0003723 ... Q2FXK6 38902339
    854609 8p2f:f (2.44) BS01 rna ? GO:0003723 ... Q2FW23 38902339
    854610 8p2f:g (2.44) BS01 rna ? GO:0003735 ... Q2G113 38902339
    854611 8p2f:h (2.44) BS01 rna ? GO:0000049 ... P48940 38902339
    854612 8p2f:h (2.44) BS02 rna ? GO:0000049 ... P48940 38902339
    854613 8p2f:i (2.44) BS01 rna ? GO:0003735 ... Q2FW20 38902339
    854614 8p2f:j (2.44) BS01 rna ? GO:0003723 ... Q2FW39 38902339
    854615 8p2f:j (2.44) BS02 rna ? GO:0003723 ... Q2FW39 38902339
    854616 8p2f:k (2.44) BS01 rna ? GO:0000049 ... A0A0D1JTN2 38902339
    854617 8p2f:l (2.44) BS01 rna ? GO:0003735 ... Q2FW31 38902339
    854618 8p2f:m (2.44) BS01 rna ? GO:0000049 ... P0A0H0 38902339
    854619 8p2f:n (2.44) BS01 rna ? GO:0000049 ... Q2FW30 38902339
    854620 8p2f:o (2.44) BS01 rna ? GO:0003735 ... Q2FW19 38902339
    854621 8p2f:o (2.44) BS02 ZN ? GO:0003735 ... Q2FW19 38902339
    854622 8p2f:p (2.44) BS01 rna ? GO:0003735 ... Q2G2Q1 38902339
    854623 8p2f:p (2.44) BS02 rna ? GO:0003735 ... Q2G2Q1 38902339
    854624 8p2f:q (2.44) BS01 rna ? GO:0003735 ... Q2FZ45 38902339
    854625 8p2f:r (2.44) BS01 rna ? GO:0003735 ... Q2FW15 38902339
    854626 8p2f:s (2.44) BS01 rna ? GO:0003735 ... Q2G111 38902339
    854627 8p2f:t (2.44) BS01 rna ? GO:0003723 ... Q2FW10 38902339
    854628 8p2f:u (2.44) BS01 rna ? GO:0003723 ... Q2FXY6 38902339
    854629 8p2g:1 (2.02) BS01 rna ? GO:0003735 ... Q2FZ60 38902339
    854630 8p2g:2 (2.02) BS01 rna ? GO:0003735 ... Q2FW14 38902339
    854631 8p2g:3 (2.02) BS01 rna ? GO:0003735 ... P0A0G2 38902339
    854632 8p2g:3 (2.02) BS02 rna ? GO:0003735 ... P0A0G2 38902339
    854633 8p2g:4 (2.02) BS01 rna ? GO:0003735 ... Q2FWD8 38902339
    854634 8p2g:5 (2.02) BS01 rna ? GO:0003735 ... Q2FZF1 38902339
    854635 8p2g:5 (2.02) BS02 ZN ? GO:0003735 ... Q2FZF1 38902339
    854636 8p2g:6 (2.02) BS01 rna ? GO:0003735 ... Q2FYU6 38902339
    854637 8p2g:7 (2.02) BS01 rna ? GO:0003735 ... Q2FUQ0 38902339
    854638 8p2g:8 (2.02) BS01 rna ? GO:0003735 ... Q2FXQ0 38902339
    854639 8p2g:9 (2.02) BS01 rna ? GO:0003735 ... Q2FW29 38902339
    854640 8p2g:9 (2.02) BS02 ZN ? GO:0003735 ... Q2FW29 38902339
    854641 8p2g:E (2.02) BS01 rna ? GO:0003746 ... Q2G0N1 38902339
    854642 8p2g:E (2.02) BS02 rna ? GO:0003746 ... Q2G0N1 38902339
    854643 8p2g:E (2.02) BS03 GDP ? GO:0003746 ... Q2G0N1 38902339
    854644 8p2g:E (2.02) BS04 WUX ? GO:0003746 ... Q2G0N1 38902339
    854645 8p2g:G (2.02) BS01 rna ? GO:0002181 ... P60430 38902339
    854646 8p2g:H (2.02) BS01 rna ? GO:0003735 ... Q2FW06 38902339
    854647 8p2g:I (2.02) BS01 rna ? GO:0003735 ... Q2FW07 38902339
    854648 8p2g:J (2.02) BS01 rna ? GO:0000049 ... Q2FW18 38902339
    854649 8p2g:J (2.02) BS02 rna ? GO:0000049 ... Q2FW18 38902339
    854650 8p2g:K (2.02) BS01 rna ? GO:0002181 ... Q2FW21 38902339
    854651 8p2g:M (2.02) BS01 rna ? GO:0003729 ... Q2FW38 38902339
    854652 8p2g:N (2.02) BS01 rna ? GO:0003735 ... Q2FW16 38902339
    854653 8p2g:N (2.02) BS02 rna ? GO:0003735 ... Q2FW16 38902339
    854654 8p2g:O (2.02) BS01 rna ? GO:0003735 ... P0A0F8 38902339
    854655 8p2g:P (2.02) BS01 rna ? GO:0003735 ... Q2FW13 38902339
    854656 8p2g:P (2.02) BS02 rna ? GO:0003735 ... Q2FW13 38902339
    854657 8p2g:Q (2.02) BS01 rna ? GO:0003735 ... Q2FW33 38902339
    854658 8p2g:R (2.02) BS01 rna ? GO:0003735 ... Q2FW22 38902339
    854659 8p2g:R (2.02) BS02 rna ? GO:0003735 ... Q2FW22 38902339
    854660 8p2g:S (2.02) BS01 rna ? GO:0003735 ... Q2FZ42 38902339
    854661 8p2g:S (2.02) BS02 rna ? GO:0003735 ... Q2FZ42 38902339
    854662 8p2g:T (2.02) BS01 rna ? GO:0000027 ... Q2FXQ1 38902339
    854663 8p2g:U (2.02) BS01 rna ? GO:0003723 ... Q2FXS8 38902339
    854664 8p2g:V (2.02) BS01 rna ? GO:0003735 ... Q2FW11 38902339
    854665 8p2g:W (2.02) BS01 rna ? GO:0003735 ... Q2FW08 38902339
    854666 8p2g:X (2.02) BS01 rna ? GO:0003723 ... Q2FW17 38902339
    854667 8p2g:Y (2.02) BS01 rna ? GO:0003723 ... Q2G0S0 38902339
    854668 8p2g:Z (2.02) BS01 rna ? GO:0003735 ... Q2FXT0 38902339
    854669 8p2g:Z (2.02) BS02 rna ? GO:0003735 ... Q2FXT0 38902339
    854670 8p2g:c (2.02) BS01 rna ? GO:0003735 ... Q2FZ25 38902339
    854671 8p2g:d (2.02) BS01 rna ? GO:0003676 ... Q2FW12 38902339
    854672 8p2g:e (2.02) BS01 rna ? GO:0003723 ... Q2FXK6 38902339
    854673 8p2g:f (2.02) BS01 rna ? GO:0003723 ... Q2FW23 38902339
    854674 8p2g:g (2.02) BS01 rna ? GO:0003735 ... Q2G113 38902339
    854675 8p2g:h (2.02) BS01 rna ? GO:0000049 ... P48940 38902339
    854676 8p2g:i (2.02) BS01 rna ? GO:0003735 ... Q2FW20 38902339
    854677 8p2g:j (2.02) BS01 rna ? GO:0003723 ... Q2FW39 38902339
    854678 8p2g:j (2.02) BS02 rna ? GO:0003723 ... Q2FW39 38902339
    854679 8p2g:k (2.02) BS01 rna ? GO:0000049 ... A5IV35 38902339
    854680 8p2g:l (2.02) BS01 rna ? GO:0003735 ... Q2FW31 38902339
    854681 8p2g:m (2.02) BS01 rna ? GO:0000049 ... P0A0H0 38902339
    854682 8p2g:n (2.02) BS01 rna ? GO:0000049 ... Q2FW30 38902339
    854683 8p2g:o (2.02) BS01 rna ? GO:0003735 ... Q2FW19 38902339
    854684 8p2g:o (2.02) BS02 ZN ? GO:0003735 ... Q2FW19 38902339
    854685 8p2g:p (2.02) BS01 rna ? GO:0003735 ... Q2G2Q1 38902339
    854686 8p2g:p (2.02) BS02 rna ? GO:0003735 ... Q2G2Q1 38902339
    854687 8p2g:q (2.02) BS01 rna ? GO:0003735 ... Q2FZ45 38902339
    854688 8p2g:r (2.02) BS01 rna ? GO:0003735 ... Q2FW15 38902339
    854689 8p2g:s (2.02) BS01 rna ? GO:0003735 ... Q2G111 38902339
    854690 8p2g:t (2.02) BS01 rna ? GO:0003723 ... Q2FW10 38902339
    854691 8p2g:u (2.02) BS01 rna ? GO:0003723 ... Q2FXY6 38902339
    854692 8p2h:1 (2.49) BS01 rna ? GO:0003735 ... Q2FZ60 38902339
    854693 8p2h:2 (2.49) BS01 rna ? GO:0003735 ... Q2FW14 38902339
    854694 8p2h:3 (2.49) BS01 rna ? GO:0003735 ... P0A0G2 38902339
    854695 8p2h:3 (2.49) BS02 rna ? GO:0003735 ... P0A0G2 38902339
    854696 8p2h:4 (2.49) BS01 rna ? GO:0003735 ... Q2FWD8 38902339
    854697 8p2h:5 (2.49) BS01 rna ? GO:0003735 ... Q2FZF1 38902339
    854698 8p2h:5 (2.49) BS02 ZN ? GO:0003735 ... Q2FZF1 38902339
    854699 8p2h:6 (2.49) BS01 rna ? GO:0003735 ... Q2FYU6 38902339
    854700 8p2h:7 (2.49) BS01 rna ? GO:0003735 ... Q2FUQ0 38902339
    854701 8p2h:8 (2.49) BS01 rna ? GO:0003735 ... Q2FXQ0 38902339
    854702 8p2h:9 (2.49) BS01 rna ? GO:0003735 ... Q2FW29 38902339
    854703 8p2h:9 (2.49) BS02 ZN ? GO:0003735 ... Q2FW29 38902339
    854704 8p2h:E (2.49) BS01 rna ? GO:0003746 ... Q2G0N1 38902339
    854705 8p2h:E (2.49) BS02 rna ? GO:0003746 ... Q2G0N1 38902339
    854706 8p2h:E (2.49) BS03 GDP ? GO:0003746 ... Q2G0N1 38902339
    854707 8p2h:E (2.49) BS04 FUA ? GO:0003746 ... Q2G0N1 38902339
    854708 8p2h:G (2.49) BS01 rna ? GO:0002181 ... P60430 38902339
    854709 8p2h:G (2.49) BS02 MG ? GO:0002181 ... P60430 38902339
    854710 8p2h:H (2.49) BS01 rna ? GO:0003735 ... Q2FW06 38902339
    854711 8p2h:I (2.49) BS01 rna ? GO:0003735 ... Q2FW07 38902339
    854712 8p2h:J (2.49) BS01 rna ? GO:0000049 ... Q2FW18 38902339
    854713 8p2h:J (2.49) BS02 rna ? GO:0000049 ... Q2FW18 38902339
    854714 8p2h:K (2.49) BS01 rna ? GO:0002181 ... Q2FW21 38902339
    854715 8p2h:M (2.49) BS01 rna ? GO:0003729 ... Q2FW38 38902339
    854716 8p2h:N (2.49) BS01 rna ? GO:0003735 ... Q2FW16 38902339
    854717 8p2h:N (2.49) BS02 rna ? GO:0003735 ... Q2FW16 38902339
    854718 8p2h:O (2.49) BS01 rna ? GO:0003735 ... P0A0F8 38902339
    854719 8p2h:P (2.49) BS01 rna ? GO:0003735 ... Q2FW13 38902339
    854720 8p2h:P (2.49) BS02 rna ? GO:0003735 ... Q2FW13 38902339
    854721 8p2h:Q (2.49) BS01 rna ? GO:0003735 ... Q2FW33 38902339
    854722 8p2h:R (2.49) BS01 rna ? GO:0003735 ... Q2FW22 38902339
    854723 8p2h:R (2.49) BS02 rna ? GO:0003735 ... Q2FW22 38902339
    854724 8p2h:S (2.49) BS01 rna ? GO:0003735 ... Q2FZ42 38902339
    854725 8p2h:S (2.49) BS02 rna ? GO:0003735 ... Q2FZ42 38902339
    854726 8p2h:T (2.49) BS01 rna ? GO:0000027 ... Q2FXQ1 38902339
    854727 8p2h:U (2.49) BS01 rna ? GO:0003723 ... Q2FXS8 38902339
    854728 8p2h:V (2.49) BS01 rna ? GO:0003735 ... Q2FW11 38902339
    854729 8p2h:W (2.49) BS01 rna ? GO:0003735 ... Q2FW08 38902339
    854730 8p2h:X (2.49) BS01 rna ? GO:0003723 ... Q2FW17 38902339
    854731 8p2h:Y (2.49) BS01 rna ? GO:0003723 ... Q2G0S0 38902339
    854732 8p2h:Z (2.49) BS01 rna ? GO:0003735 ... Q2FXT0 38902339
    854733 8p2h:Z (2.49) BS02 rna ? GO:0003735 ... Q2FXT0 38902339
    854734 8p2h:c (2.49) BS01 rna ? GO:0003735 ... Q2FZ25 38902339
    854735 8p2h:d (2.49) BS01 rna ? GO:0003676 ... Q2FW12 38902339
    854736 8p2h:e (2.49) BS01 rna ? GO:0003723 ... Q2FXK6 38902339
    854737 8p2h:f (2.49) BS01 rna ? GO:0003723 ... Q2FW23 38902339
    854738 8p2h:g (2.49) BS01 rna ? GO:0003735 ... Q2G113 38902339
    854739 8p2h:h (2.49) BS01 rna ? GO:0000049 ... P48940 38902339
    854740 8p2h:i (2.49) BS01 rna ? GO:0003735 ... Q2FW20 38902339
    854741 8p2h:j (2.49) BS01 rna ? GO:0003723 ... Q2FW39 38902339
    854742 8p2h:j (2.49) BS02 rna ? GO:0003723 ... Q2FW39 38902339
    854743 8p2h:k (2.49) BS01 rna ? GO:0000049 ... A5IV35 38902339
    854744 8p2h:l (2.49) BS01 rna ? GO:0003735 ... Q2FW31 38902339
    854745 8p2h:m (2.49) BS01 rna ? GO:0000049 ... P0A0H0 38902339
    854746 8p2h:n (2.49) BS01 rna ? GO:0000049 ... Q2FW30 38902339
    854747 8p2h:o (2.49) BS01 rna ? GO:0003735 ... Q2FW19 38902339
    854748 8p2h:o (2.49) BS02 ZN ? GO:0003735 ... Q2FW19 38902339
    854749 8p2h:p (2.49) BS01 rna ? GO:0003735 ... Q2G2Q1 38902339
    854750 8p2h:p (2.49) BS02 rna ? GO:0003735 ... Q2G2Q1 38902339
    854751 8p2h:q (2.49) BS01 rna ? GO:0003735 ... Q2FZ45 38902339
    854752 8p2h:r (2.49) BS01 rna ? GO:0003735 ... Q2FW15 38902339
    854753 8p2h:s (2.49) BS01 rna ? GO:0003735 ... Q2G111 38902339
    854754 8p2h:t (2.49) BS01 rna ? GO:0003723 ... Q2FW10 38902339
    854755 8p2h:u (2.49) BS01 rna ? GO:0003723 ... Q2FXY6 38902339
    854756 8p2i:A (3.4) BS01 ZN 2.7.7.6 GO:0000287 ... Q8U0M4 38709902
    854757 8p2i:A (3.4) BS02 ZN 2.7.7.6 GO:0000287 ... Q8U0M4 38709902
    854758 8p2i:A (3.4) BS03 MG 2.7.7.6 GO:0000287 ... Q8U0M4 38709902
    854759 8p2i:B (3.4) BS01 ZN 2.7.7.6 GO:0003677 ... Q8U0M3 38709902
    854760 8p2i:I (3.4) BS01 ZN ? GO:0005515 ... Q8U440 38709902
    854761 8p2i:N (3.4) BS01 ZN 2.7.7.6 GO:0000428 ... P60292 38709902
    854762 8p2i:P (3.4) BS01 ZN 2.7.7.6 GO:0003677 ... Q8TZI3 38709902
    854763 8p2j:A (1.73) BS01 NDP ? GO:0000785 ... A0A179UH34 37581897
    854764 8p2j:B (1.73) BS01 NDP ? GO:0000785 ... A0A179UH34 37581897
    854765 8p2j:C (1.73) BS01 NDP ? GO:0000785 ... A0A179UH34 37581897
    854766 8p2j:C (1.73) BS02 NDP ? GO:0000785 ... A0A179UH34 37581897
    854767 8p2j:D (1.73) BS01 NDP ? GO:0000785 ... A0A179UH34 37581897
    854768 8p2j:E (1.73) BS01 NDP ? GO:0000785 ... A0A179UH34 37581897
    854769 8p2j:F (1.73) BS01 NDP ? GO:0000785 ... A0A179UH34 37581897
    854770 8p2j:F (1.73) BS02 NDP ? GO:0000785 ... A0A179UH34 37581897
    854771 8p2j:G (1.73) BS01 NDP ? GO:0000785 ... A0A179UH34 37581897
    854772 8p2j:G (1.73) BS02 NDP ? GO:0000785 ... A0A179UH34 37581897
    854773 8p2j:H (1.73) BS01 NDP ? GO:0000785 ... A0A179UH34 37581897
    854774 8p2j:I (1.73) BS01 NDP ? GO:0000785 ... A0A179UH34 37581897
    854775 8p2k:AA (2.9) BS01 rna ? GO:0003735 ... G1TZ76 37347872
    854776 8p2k:AB (2.9) BS01 rna ? GO:0000028 ... G1TIB4 37347872
    854777 8p2k:AC (2.9) BS01 rna ? GO:0003735 ... G1SK22 37347872
    854778 8p2k:AC (2.9) BS02 ZN ? GO:0003735 ... G1SK22 37347872
    854779 8p2k:AD (2.9) BS01 rna ? GO:0003735 ... G1T8A2 37347872
    854780 8p2k:AE (2.9) BS01 rna ? GO:0003729 ... A0A2K5LQY6 37347872
    854781 8p2k:AE (2.9) BS02 ZN ? GO:0003729 ... A0A2K5LQY6 37347872
    854782 8p2k:AF (2.9) BS01 rna ? GO:0001891 ... G1SJB4 37347872
    854783 8p2k:AG (2.9) BS01 rna ? GO:0002181 ... G1U7M4 37347872
    854784 8p2k:AG (2.9) BS02 ZN ? GO:0002181 ... G1U7M4 37347872
    854785 8p2k:AZ (2.9) BS01 rna ? GO:0000028 ... G1TLT8 37347872
    854786 8p2k:Aa (2.9) BS01 rna ? GO:0003735 ... G1SS70 37347872
    854787 8p2k:Ab (2.9) BS01 rna ? GO:0003723 ... O18789 37347872
    854788 8p2k:Ac (2.9) BS01 rna 4.2.99.18 GO:0003723 ... G1TNM3 37347872
    854789 8p2k:Ad (2.9) BS01 rna ? GO:0003723 ... G1TK17 37347872
    854790 8p2k:Ae (2.9) BS01 rna ? GO:0003723 ... G1TFM5 37347872
    854791 8p2k:Af (2.9) BS01 rna ? GO:0003735 ... G1TM55 37347872
    854792 8p2k:Ag (2.9) BS01 rna ? GO:0003735 ... G1SVB0 37347872
    854793 8p2k:Ah (2.9) BS01 rna ? GO:0003735 ... G1TJW1 37347872
    854794 8p2k:Ah (2.9) BS02 rna ? GO:0003735 ... G1TJW1 37347872
    854795 8p2k:Ai (2.9) BS01 rna ? GO:0003723 ... B7NZS8 37347872
    854796 8p2k:Aj (2.9) BS01 rna ? GO:0003723 ... G1T168 37347872
    854797 8p2k:Ak (2.9) BS01 rna ? GO:0003735 ... G1TRM4 37347872
    854798 8p2k:Al (2.9) BS01 rna ? GO:0003735 ... G1SFR8 37347872
    854799 8p2k:Am (2.9) BS01 rna ? GO:0003735 ... G1SP51 37347872
    854800 8p2k:Am (2.9) BS02 rna ? GO:0003735 ... G1SP51 37347872

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).