SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    854601 8pj4:B (3.2) BS01 rna N/A GO:0002181 ... P62280 39289545
    854602 8pj4:C (3.2) BS01 rna N/A GO:0002181 ... P62701 39289545
    854603 8pj4:D (3.2) BS01 rna N/A GO:0002181 ... P46781 39289545
    854604 8pj4:E (3.2) BS01 rna N/A GO:0002181 ... P62266 39289545
    854605 8pj4:F (3.2) BS01 rna N/A GO:0002181 ... P62861 39289545
    854606 8pj4:G (3.2) BS01 rna N/A GO:0001843 ... P62081 39289545
    854607 8pj4:H (3.2) BS01 rna N/A GO:0000028 ... P42677 39289545
    854608 8pj4:I (3.2) BS01 rna N/A GO:0002181 ... P62277 39289545
    854609 8pj4:J (3.2) BS01 rna N/A GO:0002181 ... P62244 39289545
    854610 8pj4:L (3.2) BS01 rna N/A GO:0002181 ... P15880 39289545
    854611 8pj4:M (3.2) BS01 rna N/A GO:0002181 ... P08708 39289545
    854612 8pj4:N (3.2) BS01 rna N/A GO:0000028 ... P08865 39289545
    854613 8pj4:O (3.2) BS01 rna N/A GO:0002181 ... P61247 39289545
    854614 8pj4:P (3.2) BS01 rna N/A GO:0000028 ... P62263 39289545
    854615 8pj4:Q (3.2) BS01 rna N/A GO:0002181 ... P62854 39289545
    854616 8pj4:Q (3.2) BS02 ZN N/A GO:0002181 ... P62854 39289545
    854617 8pj4:R (3.2) BS01 rna N/A GO:0000462 ... P62241 39289545
    854618 8pj4:S (3.2) BS01 rna N/A GO:0000082 ... P62753 39289545
    854619 8pj4:T (3.2) BS01 rna N/A GO:0002181 ... P62847 39289545
    854620 8pj4:V (3.2) BS01 rna N/A GO:0000028 ... P46782 39289545
    854621 8pj4:Y (3.2) BS01 rna N/A GO:0000462 ... P62249 39289545
    854622 8pj4:Z (3.2) BS01 rna N/A GO:0000977 ... P23396 39289545
    854623 8pj4:Z (3.2) BS02 rna N/A GO:0000977 ... P23396 39289545
    854624 8pj4:a (3.2) BS01 rna N/A GO:0002181 ... P46783 39289545
    854625 8pj4:b (3.2) BS01 rna N/A GO:0000028 ... P62841 39289545
    854626 8pj4:b (3.2) BS02 rna N/A GO:0000028 ... P62841 39289545
    854627 8pj4:b (3.2) BS03 rna N/A GO:0000028 ... P62841 39289545
    854628 8pj4:c (3.2) BS01 rna N/A GO:0001891 ... P63244 39289545
    854629 8pj4:d (3.2) BS01 rna N/A GO:0000028 ... P39019 39289545
    854630 8pj4:e (3.2) BS01 rna N/A GO:0002181 ... P62851 39289545
    854631 8pj4:e (3.2) BS02 rna N/A GO:0002181 ... P62851 39289545
    854632 8pj4:f (3.2) BS01 rna N/A GO:0002181 ... P62269 39289545
    854633 8pj4:f (3.2) BS02 rna N/A GO:0002181 ... P62269 39289545
    854634 8pj4:f (3.2) BS03 MG N/A GO:0002181 ... P62269 39289545
    854635 8pj4:h (3.2) BS01 rna N/A GO:0002181 ... P60866 39289545
    854636 8pj4:i (3.2) BS01 rna N/A GO:0002181 ... P62273 39289545
    854637 8pj4:k (3.2) BS01 rna N/A GO:0002181 ... P62979 39289545
    854638 8pj4:k (3.2) BS02 ZN N/A GO:0002181 ... P62979 39289545
    854639 8pj4:m (3.2) BS01 rna N/A GO:0002181 ... P25398 39289545
    854640 8pj4:n (3.2) BS01 rna N/A GO:0000028 ... P62857 39289545
    854641 8pj4:o (3.2) BS01 rna N/A GO:0001732 ... O75821 39289545
    854642 8pj4:q (3.2) BS01 rna N/A GO:0000049 ... P47813 39289545
    854643 8pj4:q (3.2) BS02 rna N/A GO:0000049 ... P47813 39289545
    854644 8pj4:q (3.2) BS03 rna N/A GO:0000049 ... P47813 39289545
    854645 8pj4:r (3.2) BS01 rna N/A GO:0000423 ... P05198 39289545
    854646 8pj4:r (3.2) BS02 rna N/A GO:0000423 ... P05198 39289545
    854647 8pj4:u (3.2) BS01 rna N/A GO:0001732 ... Q14152 39289545
    854648 8pj4:x (3.2) BS01 rna N/A GO:0001732 ... O15371 39289545
    854649 8pj4:x (3.2) BS02 rna N/A GO:0001732 ... O15371 39289545
    854650 8pj4:y (3.2) BS01 rna N/A GO:0001732 ... Q99613 39289545
    854651 8pj4:y (3.2) BS02 rna N/A GO:0001732 ... Q99613 39289545
    854652 8pj5:0 (2.9) BS01 rna N/A GO:0000049 ... O60841 39289545
    854653 8pj5:0 (2.9) BS02 rna N/A GO:0000049 ... O60841 39289545
    854654 8pj5:0 (2.9) BS03 MG N/A GO:0000049 ... O60841 39289545
    854655 8pj5:0 (2.9) BS04 GTP N/A GO:0000049 ... O60841 39289545
    854656 8pj5:1 (2.9) BS01 rna N/A GO:0001732 ... P55884 39289545
    854657 8pj5:8 (2.9) BS01 rna N/A GO:0001732 ... O15372 39289545
    854658 8pj5:B (2.9) BS01 rna N/A GO:0002181 ... P62280 39289545
    854659 8pj5:C (2.9) BS01 rna N/A GO:0002181 ... P62701 39289545
    854660 8pj5:D (2.9) BS01 rna N/A GO:0002181 ... P46781 39289545
    854661 8pj5:E (2.9) BS01 rna N/A GO:0002181 ... P62266 39289545
    854662 8pj5:F (2.9) BS01 rna N/A GO:0003735 ... P62861 39289545
    854663 8pj5:F (2.9) BS02 rna N/A GO:0003735 ... P62861 39289545
    854664 8pj5:G (2.9) BS01 rna N/A GO:0001843 ... P62081 39289545
    854665 8pj5:H (2.9) BS01 rna N/A GO:0000028 ... P42677 39289545
    854666 8pj5:I (2.9) BS01 rna N/A GO:0002181 ... P62277 39289545
    854667 8pj5:J (2.9) BS01 rna N/A GO:0002181 ... P62244 39289545
    854668 8pj5:L (2.9) BS01 rna N/A GO:0002181 ... P15880 39289545
    854669 8pj5:L (2.9) BS02 rna N/A GO:0002181 ... P15880 39289545
    854670 8pj5:M (2.9) BS01 rna N/A GO:0002181 ... P08708 39289545
    854671 8pj5:N (2.9) BS01 rna N/A GO:0000028 ... P08865 39289545
    854672 8pj5:O (2.9) BS01 rna N/A GO:0002181 ... P61247 39289545
    854673 8pj5:P (2.9) BS01 rna N/A GO:0000028 ... P62263 39289545
    854674 8pj5:Q (2.9) BS01 rna N/A GO:0002181 ... P62854 39289545
    854675 8pj5:Q (2.9) BS02 rna N/A GO:0002181 ... P62854 39289545
    854676 8pj5:Q (2.9) BS03 ZN N/A GO:0002181 ... P62854 39289545
    854677 8pj5:R (2.9) BS01 rna N/A GO:0000462 ... P62241 39289545
    854678 8pj5:S (2.9) BS01 rna N/A GO:0000082 ... P62753 39289545
    854679 8pj5:T (2.9) BS01 rna N/A GO:0002181 ... P62847 39289545
    854680 8pj5:V (2.9) BS01 rna N/A GO:0000028 ... P46782 39289545
    854681 8pj5:V (2.9) BS02 MG N/A GO:0000028 ... P46782 39289545
    854682 8pj5:Y (2.9) BS01 rna N/A GO:0000462 ... P62249 39289545
    854683 8pj5:Z (2.9) BS01 rna N/A GO:0000977 ... P23396 39289545
    854684 8pj5:Z (2.9) BS02 rna N/A GO:0000977 ... P23396 39289545
    854685 8pj5:a (2.9) BS01 rna N/A GO:0002181 ... P46783 39289545
    854686 8pj5:b (2.9) BS01 rna N/A GO:0000028 ... P62841 39289545
    854687 8pj5:b (2.9) BS02 rna N/A GO:0000028 ... P62841 39289545
    854688 8pj5:b (2.9) BS03 rna N/A GO:0000028 ... P62841 39289545
    854689 8pj5:c (2.9) BS01 rna N/A GO:0001891 ... P63244 39289545
    854690 8pj5:d (2.9) BS01 rna N/A GO:0000028 ... P39019 39289545
    854691 8pj5:e (2.9) BS01 rna N/A GO:0002181 ... P62851 39289545
    854692 8pj5:e (2.9) BS02 rna N/A GO:0002181 ... P62851 39289545
    854693 8pj5:f (2.9) BS01 rna N/A GO:0002181 ... P62269 39289545
    854694 8pj5:f (2.9) BS02 rna N/A GO:0002181 ... P62269 39289545
    854695 8pj5:f (2.9) BS03 MG N/A GO:0002181 ... P62269 39289545
    854696 8pj5:h (2.9) BS01 rna N/A GO:0002181 ... P60866 39289545
    854697 8pj5:i (2.9) BS01 rna N/A GO:0002181 ... P62273 39289545
    854698 8pj5:k (2.9) BS01 rna N/A GO:0002181 ... P62979 39289545
    854699 8pj5:k (2.9) BS02 ZN N/A GO:0002181 ... P62979 39289545
    854700 8pj5:m (2.9) BS01 rna N/A GO:0002181 ... P25398 39289545
    854701 8pj5:n (2.9) BS01 rna N/A GO:0000028 ... P62857 39289545
    854702 8pj5:o (2.9) BS01 rna N/A GO:0001732 ... O75821 39289545
    854703 8pj5:q (2.9) BS01 rna N/A GO:0000049 ... P47813 39289545
    854704 8pj5:q (2.9) BS02 rna N/A GO:0000049 ... P47813 39289545
    854705 8pj5:u (2.9) BS01 rna N/A GO:0001732 ... Q14152 39289545
    854706 8pj5:x (2.9) BS01 rna N/A GO:0001732 ... O15371 39289545
    854707 8pj5:x (2.9) BS02 rna N/A GO:0001732 ... O15371 39289545
    854708 8pj5:y (2.9) BS01 rna N/A GO:0001732 ... Q99613 39289545
    854709 8pj6:1 (2.9) BS01 rna N/A GO:0001732 ... P55884 39289545
    854710 8pj6:B (2.9) BS01 rna N/A GO:0002181 ... P62280 39289545
    854711 8pj6:C (2.9) BS01 rna N/A GO:0002181 ... P62701 39289545
    854712 8pj6:D (2.9) BS01 rna N/A GO:0002181 ... P46781 39289545
    854713 8pj6:E (2.9) BS01 rna N/A GO:0002181 ... P62266 39289545
    854714 8pj6:F (2.9) BS01 rna N/A GO:0003735 ... P62861 39289545
    854715 8pj6:G (2.9) BS01 rna N/A GO:0001843 ... P62081 39289545
    854716 8pj6:H (2.9) BS01 rna N/A GO:0000028 ... P42677 39289545
    854717 8pj6:I (2.9) BS01 rna N/A GO:0002181 ... P62277 39289545
    854718 8pj6:J (2.9) BS01 rna N/A GO:0002181 ... P62244 39289545
    854719 8pj6:L (2.9) BS01 rna N/A GO:0002181 ... P15880 39289545
    854720 8pj6:M (2.9) BS01 rna N/A GO:0002181 ... P08708 39289545
    854721 8pj6:N (2.9) BS01 rna N/A GO:0000028 ... P08865 39289545
    854722 8pj6:O (2.9) BS01 rna N/A GO:0002181 ... P61247 39289545
    854723 8pj6:P (2.9) BS01 rna N/A GO:0000028 ... P62263 39289545
    854724 8pj6:Q (2.9) BS01 rna N/A GO:0002181 ... P62854 39289545
    854725 8pj6:Q (2.9) BS02 rna N/A GO:0002181 ... P62854 39289545
    854726 8pj6:Q (2.9) BS03 ZN N/A GO:0002181 ... P62854 39289545
    854727 8pj6:R (2.9) BS01 rna N/A GO:0000462 ... P62241 39289545
    854728 8pj6:S (2.9) BS01 rna N/A GO:0000082 ... P62753 39289545
    854729 8pj6:T (2.9) BS01 rna N/A GO:0002181 ... P62847 39289545
    854730 8pj6:V (2.9) BS01 rna N/A GO:0000028 ... P46782 39289545
    854731 8pj6:Y (2.9) BS01 rna N/A GO:0000462 ... P62249 39289545
    854732 8pj6:Z (2.9) BS01 rna N/A GO:0000977 ... P23396 39289545
    854733 8pj6:Z (2.9) BS02 rna N/A GO:0000977 ... P23396 39289545
    854734 8pj6:a (2.9) BS01 rna N/A GO:0002181 ... P46783 39289545
    854735 8pj6:b (2.9) BS01 rna N/A GO:0000028 ... P62841 39289545
    854736 8pj6:b (2.9) BS02 rna N/A GO:0000028 ... P62841 39289545
    854737 8pj6:b (2.9) BS03 rna N/A GO:0000028 ... P62841 39289545
    854738 8pj6:c (2.9) BS01 rna N/A GO:0001891 ... P63244 39289545
    854739 8pj6:d (2.9) BS01 rna N/A GO:0000028 ... P39019 39289545
    854740 8pj6:e (2.9) BS01 rna N/A GO:0002181 ... P62851 39289545
    854741 8pj6:f (2.9) BS01 rna N/A GO:0002181 ... P62269 39289545
    854742 8pj6:f (2.9) BS02 rna N/A GO:0002181 ... P62269 39289545
    854743 8pj6:f (2.9) BS03 MG N/A GO:0002181 ... P62269 39289545
    854744 8pj6:h (2.9) BS01 rna N/A GO:0002181 ... P60866 39289545
    854745 8pj6:i (2.9) BS01 rna N/A GO:0002181 ... P62273 39289545
    854746 8pj6:i (2.9) BS02 MG N/A GO:0002181 ... P62273 39289545
    854747 8pj6:i (2.9) BS03 MG N/A GO:0002181 ... P62273 39289545
    854748 8pj6:k (2.9) BS01 rna N/A GO:0002181 ... P62979 39289545
    854749 8pj6:k (2.9) BS02 ZN N/A GO:0002181 ... P62979 39289545
    854750 8pj6:m (2.9) BS01 rna N/A GO:0002181 ... P25398 39289545
    854751 8pj6:n (2.9) BS01 rna N/A GO:0000028 ... P62857 39289545
    854752 8pj6:o (2.9) BS01 rna N/A GO:0001732 ... O75821 39289545
    854753 8pj6:q (2.9) BS01 rna N/A GO:0000049 ... P47813 39289545
    854754 8pj6:q (2.9) BS02 rna N/A GO:0000049 ... P47813 39289545
    854755 8pj6:q (2.9) BS03 rna N/A GO:0000049 ... P47813 39289545
    854756 8pj6:u (2.9) BS01 rna N/A GO:0001732 ... Q14152 39289545
    854757 8pj6:x (2.9) BS01 rna N/A GO:0001732 ... O15371 39289545
    854758 8pj6:x (2.9) BS02 rna N/A GO:0001732 ... O15371 39289545
    854759 8pj6:y (2.9) BS01 rna N/A GO:0001732 ... Q99613 39289545
    854760 8pj6:y (2.9) BS02 rna N/A GO:0001732 ... Q99613 39289545
    854761 8pj7:A (1.26) BS01 ZJ9 ? N/A P42568 37944866
    854762 8pj8:A (1.5) BS01 GY1 5.2.1.8 GO:0003755 ... Q13451 38559286
    854763 8pj9:A (3.24) BS01 rna N/A GO:0003676 ... G3ECR1 N/A
    854764 8pj9:A (3.24) BS02 rna N/A GO:0003676 ... G3ECR1 N/A
    854765 8pj9:A (3.24) BS03 dna N/A GO:0003676 ... G3ECR1 N/A
    854766 8pj9:A (3.24) BS04 dna N/A GO:0003676 ... G3ECR1 N/A
    854767 8pj9:A (3.24) BS05 dna N/A GO:0003676 ... G3ECR1 N/A
    854768 8pja:A (1.6) BS01 GY1 5.2.1.8 GO:0003755 ... Q13451 38559286
    854769 8pjb:A (3.62) BS01 rna 3.6.4.13 GO:0000228 ... P24785 37989319
    854770 8pjb:A (3.62) BS02 ADP 3.6.4.13 GO:0000228 ... P24785 37989319
    854771 8pjd:A (1.6) BS01 SAH N/A GO:0008168 ... Q3UKX1 N/A
    854772 8pje:A (1.7) BS01 peptide N/A GO:0006955 ... P01903 38819988
    854773 8pje:B (1.7) BS01 peptide N/A GO:0006955 ... P01911 38819988
    854774 8pje:D (1.7) BS01 peptide N/A GO:0006955 ... P01903 38819988
    854775 8pje:E (1.7) BS01 peptide N/A GO:0006955 ... P01911 38819988
    854776 8pjf:A (1.48) BS01 peptide N/A GO:0006955 ... P01903 38819988
    854777 8pjf:B (1.48) BS01 peptide N/A GO:0006955 ... P01911 38819988
    854778 8pjg:A (1.83) BS01 peptide N/A GO:0006955 ... P01903 38819988
    854779 8pjg:B (1.83) BS01 peptide N/A GO:0006955 ... P01911 38819988
    854780 8pjg:D (1.83) BS01 peptide N/A N/A N/A 38819988
    854781 8pjg:E (1.83) BS01 peptide N/A N/A N/A 38819988
    854782 8pji:A (1.7) BS01 ZJF ? N/A Q03111 37944866
    854783 8pjj:A (4.24) BS01 rna 3.6.4.13 GO:0000228 ... P24785 37989319
    854784 8pjj:A (4.24) BS02 ADP 3.6.4.13 GO:0000228 ... P24785 37989319
    854785 8pjk:A (2.4) BS01 T7M ? GO:0000287 ... P63096 N/A
    854786 8pjk:R (2.4) BS01 CLR ? GO:0001586 ... P08908 N/A
    854787 8pjk:R (2.4) BS02 CLR ? GO:0001586 ... P08908 N/A
    854788 8pjk:R (2.4) BS03 ZL9 ? GO:0001586 ... P08908 N/A
    854789 8pjk:R (2.4) BS04 T7M ? GO:0001586 ... P08908 N/A
    854790 8pjm:AAAA (1.44) BS01 ZJ5 3.5.2.6 GO:0016787 ... Q9K2N0 N/A
    854791 8pjm:AAAA (1.44) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 N/A
    854792 8pjm:AAAA (1.44) BS03 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 N/A
    854793 8pjn:b (3.4) BS01 ZN 2.3.2.27 GO:0000151 ... Q9H871 38113892
    854794 8pjp:A (2.92) BS01 WKE ? GO:0007155 ... A0A9K2KM41 38499587
    854795 8pjp:C (2.92) BS01 WKE N/A N/A N/A 38499587
    854796 8pk0:0 (3.03) BS01 rna ? GO:0003723 ... Q9BYC8 38042949
    854797 8pk0:0 (3.03) BS02 ZN ? GO:0003723 ... Q9BYC8 38042949
    854798 8pk0:1 (3.03) BS01 rna ? GO:0003735 ... O75394 38042949
    854799 8pk0:2 (3.03) BS01 rna ? GO:0003735 ... Q9BQ48 38042949
    854800 8pk0:3 (3.03) BS01 rna ? GO:0003735 ... Q9NZE8 38042949

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).