SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    854801 8pk0:5 (3.03) BS01 rna ? GO:0003723 ... Q9BZE1 38042949
    854802 8pk0:6 (3.03) BS01 rna ? GO:0005515 ... Q96DV4 38042949
    854803 8pk0:6 (3.03) BS02 rna ? GO:0005515 ... Q96DV4 38042949
    854804 8pk0:8 (3.03) BS01 rna ? GO:0003723 ... Q9NQ50 38042949
    854805 8pk0:9 (3.03) BS01 rna ? GO:0003723 ... Q8IXM3 38042949
    854806 8pk0:D (3.03) BS01 rna ? GO:0003723 ... Q5T653 38042949
    854807 8pk0:E (3.03) BS01 rna ? GO:0003723 ... P09001 38042949
    854808 8pk0:F (3.03) BS01 rna ? GO:0003723 ... Q9BYD3 38042949
    854809 8pk0:H (3.03) BS01 rna ? GO:0003723 ... Q9BYD2 38042949
    854810 8pk0:I (3.03) BS01 rna ? GO:0003723 ... Q7Z7H8 38042949
    854811 8pk0:J (3.03) BS01 rna ? GO:0003723 ... Q9Y3B7 38042949
    854812 8pk0:K (3.03) BS01 rna ? GO:0003723 ... Q9BYD1 38042949
    854813 8pk0:L (3.03) BS01 rna ? GO:0003723 ... Q6P1L8 38042949
    854814 8pk0:M (3.03) BS01 rna ? GO:0003723 ... Q9P015 38042949
    854815 8pk0:N (3.03) BS01 rna ? GO:0003735 ... Q9NX20 38042949
    854816 8pk0:O (3.03) BS01 rna ? GO:0003735 ... Q9NRX2 38042949
    854817 8pk0:P (3.03) BS01 rna ? GO:0003723 ... Q9H0U6 38042949
    854818 8pk0:P (3.03) BS02 rna ? GO:0003723 ... Q9H0U6 38042949
    854819 8pk0:Q (3.03) BS01 rna ? GO:0003735 ... P49406 38042949
    854820 8pk0:R (3.03) BS01 rna ? GO:0003723 ... Q9BYC9 38042949
    854821 8pk0:S (3.03) BS01 rna ? GO:0003723 ... Q7Z2W9 38042949
    854822 8pk0:T (3.03) BS01 rna ? GO:0003723 ... Q9NWU5 38042949
    854823 8pk0:U (3.03) BS01 rna ? GO:0001650 ... Q16540 38042949
    854824 8pk0:V (3.03) BS01 rna ? GO:0003723 ... Q96A35 38042949
    854825 8pk0:W (3.03) BS01 rna ? GO:0003723 ... Q9P0M9 38042949
    854826 8pk0:X (3.03) BS01 rna ? GO:0003723 ... Q13084 38042949
    854827 8pk0:Y (3.03) BS01 rna ? GO:0003735 ... Q9HD33 38042949
    854828 8pk0:Z (3.03) BS01 rna ? GO:0003735 ... Q8TCC3 38042949
    854829 8pk0:a (3.03) BS01 rna ? GO:0003723 ... Q9Y6G3 38042949
    854830 8pk0:b (3.03) BS01 rna ? GO:0003723 ... Q8N983 38042949
    854831 8pk0:c (3.03) BS01 rna 3.1.26.- GO:0003723 ... Q9H9J2 38042949
    854832 8pk0:d (3.03) BS01 rna ? GO:0003723 ... Q9BRJ2 38042949
    854833 8pk0:e (3.03) BS01 rna ? GO:0003735 ... Q9H2W6 38042949
    854834 8pk0:f (3.03) BS01 rna ? GO:0005515 ... Q96GC5 38042949
    854835 8pk0:f (3.03) BS02 rna ? GO:0005515 ... Q96GC5 38042949
    854836 8pk0:g (3.03) BS01 rna ? GO:0003735 ... Q13405 38042949
    854837 8pk0:i (3.03) BS01 rna ? GO:0003735 ... Q4U2R6 38042949
    854838 8pk0:j (3.03) BS01 rna ? GO:0003735 ... Q86TS9 38042949
    854839 8pk0:k (3.03) BS01 rna ? GO:0005515 ... Q96EL3 38042949
    854840 8pk0:l (3.03) BS01 rna ? GO:0003723 ... Q6P161 38042949
    854841 8pk0:o (3.03) BS01 rna ? GO:0003735 ... Q9BQC6 38042949
    854842 8pk0:q (3.03) BS01 rna ? GO:0005515 ... Q8TAE8 38042949
    854843 8pk0:r (3.03) BS01 rna ? GO:0003735 ... Q9NVS2 38042949
    854844 8pk0:s (3.03) BS01 rna ? GO:0003723 ... Q9NP92 38042949
    854845 8pk0:t (3.03) BS01 rna ? GO:0000287 ... A4D1E9 38042949
    854846 8pk0:t (3.03) BS02 GNP ? GO:0000287 ... A4D1E9 38042949
    854847 8pk0:u (3.03) BS01 rna ? GO:0005515 ... Q96EH3 38042949
    854848 8pk0:v (3.03) BS01 PM8 ? GO:0000266 ... L0R8F8 38042949
    854849 8pk0:x (3.03) BS01 rna 2.1.1.- GO:0000957 ... Q96CB9 38042949
    854850 8pk0:x (3.03) BS02 SAM 2.1.1.- GO:0000957 ... Q96CB9 38042949
    854851 8pk0:y (3.03) BS01 rna ? GO:0003690 ... Q7Z6M4 38042949
    854852 8pk0:z (3.03) BS01 rna ? GO:0003924 ... Q9BT17 38042949
    854853 8pk0:z (3.03) BS02 GNP ? GO:0003924 ... Q9BT17 38042949
    854854 8pk0:z (3.03) BS03 MG ? GO:0003924 ... Q9BT17 38042949
    854855 8pk1:A (3.17) BS01 dna N/A GO:0004519 ... G3ECR3 N/A
    854856 8pk1:A (3.17) BS02 dna N/A GO:0004519 ... G3ECR3 N/A
    854857 8pk1:A (3.17) BS03 dna N/A GO:0004519 ... G3ECR3 N/A
    854858 8pk1:A (3.17) BS04 MG N/A GO:0004519 ... G3ECR3 N/A
    854859 8pk1:B (3.17) BS01 dna N/A GO:0003676 ... G3ECR2 N/A
    854860 8pk1:C (3.17) BS01 dna N/A GO:0003676 ... G3ECR2 N/A
    854861 8pk1:C (3.17) BS02 dna N/A GO:0003676 ... G3ECR2 N/A
    854862 8pk1:D (3.17) BS01 dna N/A GO:0004519 ... G3ECR3 N/A
    854863 8pk1:D (3.17) BS02 dna N/A GO:0004519 ... G3ECR3 N/A
    854864 8pk1:D (3.17) BS03 dna N/A GO:0004519 ... G3ECR3 N/A
    854865 8pk1:D (3.17) BS04 MG N/A GO:0004519 ... G3ECR3 N/A
    854866 8pk1:E (3.17) BS01 dna N/A GO:0003676 ... G3ECR2 N/A
    854867 8pk1:F (3.17) BS01 dna N/A GO:0003676 ... G3ECR2 N/A
    854868 8pk1:F (3.17) BS02 dna N/A GO:0003676 ... G3ECR2 N/A
    854869 8pk5:B (2.5) BS01 MG N/A GO:0005515 ... O15014
    Q96SY0
    38906142
    854870 8pk6:A (3.21) BS01 peptide N/A N/A Q9NVM9 38906142
    854871 8pk6:C (3.21) BS01 peptide N/A N/A Q9NVM9 38906142
    854872 8pk6:E (3.21) BS01 peptide N/A N/A Q9NVM9 38906142
    854873 8pk7:A (2.52) BS01 ZN N/A N/A Q8JUX6 39285216
    854874 8pk8:A (2.49) BS01 PLP 2.8.1.7 GO:0030170 ... Q9Y697 38627381
    854875 8pk8:B (2.49) BS01 8Q1 ? GO:0005515 ... Q9HD34 38627381
    854876 8pk8:D (2.49) BS01 FE2 ? GO:0005506 ... Q9H1K1 38627381
    854877 8pk9:A (2.58) BS01 PLP 2.8.1.7 GO:0030170 ... Q9Y697 38627381
    854878 8pk9:B (2.58) BS01 8Q1 ? GO:0005515 ... Q9HD34 38627381
    854879 8pk9:D (2.58) BS01 FE2 ? GO:0005506 ... Q9H1K1 38627381
    854880 8pka:A (2.75) BS01 PLP 2.8.1.7 GO:0030170 ... Q9Y697 38627381
    854881 8pka:B (2.75) BS01 8Q1 ? GO:0005515 ... Q9HD34 38627381
    854882 8pka:D (2.75) BS01 FE2 ? GO:0005506 ... Q9H1K1 38627381
    854883 8pkb:A (1.9) BS01 FE N/A GO:0003677 ... Q6GGE2 39655415
    854884 8pkb:A (1.9) BS02 FE N/A GO:0003677 ... Q6GGE2 39655415
    854885 8pkb:A (1.9) BS03 ZN N/A GO:0003677 ... Q6GGE2 39655415
    854886 8pkh:BC (3.35) BS01 peptide ? N/A Q9R3U6 37866476
    854887 8pkh:BM (3.35) BS01 peptide ? N/A Q9R3U6 37866476
    854888 8pkh:BR (3.35) BS01 peptide ? N/A Q9R3U6 37866476
    854889 8pkh:BT (3.35) BS01 peptide ? N/A Q9R3U6 37866476
    854890 8pkh:BX (3.35) BS01 peptide ? N/A Q9R3U6 37866476
    854891 8pki:A (2.58) BS01 dna ? GO:0000775 ... P84244 38409506
    854892 8pki:A (2.58) BS02 dna ? GO:0000775 ... P84244 38409506
    854893 8pki:B (2.58) BS01 dna ? GO:0000786 ... P62806 38409506
    854894 8pki:B (2.58) BS02 dna ? GO:0000786 ... P62806 38409506
    854895 8pki:C (2.58) BS01 dna ? GO:0000786 ... C0HKE3 38409506
    854896 8pki:C (2.58) BS02 dna ? GO:0000786 ... C0HKE3 38409506
    854897 8pki:D (2.58) BS01 dna ? GO:0000786 ... Q6ZWY9 38409506
    854898 8pki:E (2.58) BS01 dna ? GO:0000775 ... P84244 38409506
    854899 8pki:E (2.58) BS02 dna ? GO:0000775 ... P84244 38409506
    854900 8pki:F (2.58) BS01 dna ? GO:0000786 ... P62806 38409506
    854901 8pki:F (2.58) BS02 dna ? GO:0000786 ... P62806 38409506
    854902 8pki:G (2.58) BS01 dna ? GO:0000786 ... C0HKE3 38409506
    854903 8pki:G (2.58) BS02 dna ? GO:0000786 ... C0HKE3 38409506
    854904 8pki:H (2.58) BS01 dna ? GO:0000786 ... Q6ZWY9 38409506
    854905 8pki:H (2.58) BS02 dna ? GO:0000786 ... Q6ZWY9 38409506
    854906 8pki:K (2.58) BS01 dna ? GO:0003677 ... O00482 38409506
    854907 8pki:K (2.58) BS02 dna ? GO:0003677 ... O00482 38409506
    854908 8pki:K (2.58) BS03 ZN ? GO:0003677 ... O00482 38409506
    854909 8pkj:A (2.5) BS01 dna ? GO:0000775 ... P84244 38409506
    854910 8pkj:A (2.5) BS02 dna ? GO:0000775 ... P84244 38409506
    854911 8pkj:B (2.5) BS01 dna ? GO:0000786 ... P62806 38409506
    854912 8pkj:B (2.5) BS02 dna ? GO:0000786 ... P62806 38409506
    854913 8pkj:C (2.5) BS01 dna ? GO:0000786 ... C0HKE1 38409506
    854914 8pkj:C (2.5) BS02 dna ? GO:0000786 ... C0HKE1 38409506
    854915 8pkj:D (2.5) BS01 dna ? GO:0000786 ... Q6ZWY9 38409506
    854916 8pkj:E (2.5) BS01 dna ? GO:0000775 ... P84244 38409506
    854917 8pkj:E (2.5) BS02 dna ? GO:0000775 ... P84244 38409506
    854918 8pkj:F (2.5) BS01 dna ? GO:0000786 ... P62806 38409506
    854919 8pkj:F (2.5) BS02 dna ? GO:0000786 ... P62806 38409506
    854920 8pkj:G (2.5) BS01 dna ? GO:0000786 ... C0HKE1 38409506
    854921 8pkj:G (2.5) BS02 dna ? GO:0000786 ... C0HKE1 38409506
    854922 8pkj:H (2.5) BS01 dna ? GO:0000786 ... Q6ZWY9 38409506
    854923 8pkl:0 (3.09) BS01 rna ? GO:0002181 ... P0A7Q6 38409277
    854924 8pkl:0 (3.09) BS02 ZN ? GO:0002181 ... P0A7Q6 38409277
    854925 8pkl:1 (3.09) BS01 rna ? GO:0000027 ... P0A7M2 38409277
    854926 8pkl:2 (3.09) BS01 rna ? GO:0000027 ... P0A7M6 38409277
    854927 8pkl:3 (3.09) BS01 rna ? GO:0000027 ... P0AG51 38409277
    854928 8pkl:3 (3.09) BS02 rna ? GO:0000027 ... P0AG51 38409277
    854929 8pkl:4 (3.09) BS01 rna ? GO:0002181 ... P0A7M9 38409277
    854930 8pkl:4 (3.09) BS02 rna ? GO:0002181 ... P0A7M9 38409277
    854931 8pkl:4 (3.09) BS03 ZN ? GO:0002181 ... P0A7M9 38409277
    854932 8pkl:5 (3.09) BS01 rna ? GO:0000027 ... P0A7N4 38409277
    854933 8pkl:6 (3.09) BS01 rna ? GO:0002181 ... P0A7Q1 38409277
    854934 8pkl:B (3.09) BS01 rna ? GO:0000028 ... P0A7V0 38409277
    854935 8pkl:C (3.09) BS01 rna ? GO:0000028 ... P0A7V3 38409277
    854936 8pkl:C (3.09) BS02 rna ? GO:0000028 ... P0A7V3 38409277
    854937 8pkl:D (3.09) BS01 rna ? GO:0000028 ... P0A7V8 38409277
    854938 8pkl:E (3.09) BS01 rna ? GO:0000028 ... P0A7W1 38409277
    854939 8pkl:E (3.09) BS02 rna ? GO:0000028 ... P0A7W1 38409277
    854940 8pkl:F (3.09) BS01 rna ? GO:0002181 ... P02358 38409277
    854941 8pkl:G (3.09) BS01 rna ? GO:0000028 ... P02359 38409277
    854942 8pkl:G (3.09) BS02 rna ? GO:0000028 ... P02359 38409277
    854943 8pkl:H (3.09) BS01 rna ? GO:0000028 ... P0A7W7 38409277
    854944 8pkl:I (3.09) BS01 rna ? GO:0000049 ... P0A7X3 38409277
    854945 8pkl:I (3.09) BS02 rna ? GO:0000049 ... P0A7X3 38409277
    854946 8pkl:J (3.09) BS01 rna ? GO:0000049 ... P0A7R5 38409277
    854947 8pkl:K (3.09) BS01 rna ? GO:0002181 ... P0A7R9 38409277
    854948 8pkl:L (3.09) BS01 rna ? GO:0000049 ... P0A7S3 38409277
    854949 8pkl:M (3.09) BS01 rna ? GO:0000049 ... P0A7S9 38409277
    854950 8pkl:M (3.09) BS02 rna ? GO:0000049 ... P0A7S9 38409277
    854951 8pkl:N (3.09) BS01 rna ? GO:0000028 ... P0AG59 38409277
    854952 8pkl:O (3.09) BS01 rna ? GO:0000028 ... P0ADZ4 38409277
    854953 8pkl:O (3.09) BS02 rna ? GO:0000028 ... P0ADZ4 38409277
    854954 8pkl:P (3.09) BS01 rna ? GO:0000028 ... P0A7T3 38409277
    854955 8pkl:Q (3.09) BS01 rna ? GO:0000028 ... P0AG63 38409277
    854956 8pkl:R (3.09) BS01 rna ? GO:0002181 ... P0A7T7 38409277
    854957 8pkl:S (3.09) BS01 rna ? GO:0000028 ... P0A7U3 38409277
    854958 8pkl:T (3.09) BS01 rna ? GO:0000028 ... P0A7U7 38409277
    854959 8pkl:U (3.09) BS01 rna ? GO:0000028 ... P68679 38409277
    854960 8pkl:a (3.09) BS01 rna ? GO:0000027 ... P0A7L0 38409277
    854961 8pkl:b (3.09) BS01 rna ? GO:0000027 ... P60422 38409277
    854962 8pkl:b (3.09) BS02 rna ? GO:0000027 ... P60422 38409277
    854963 8pkl:c (3.09) BS01 rna ? GO:0000027 ... P60438 38409277
    854964 8pkl:d (3.09) BS01 rna ? GO:0001070 ... P60723 38409277
    854965 8pkl:e (3.09) BS01 rna ? GO:0000027 ... P62399 38409277
    854966 8pkl:e (3.09) BS02 rna ? GO:0000027 ... P62399 38409277
    854967 8pkl:e (3.09) BS03 rna ? GO:0000027 ... P62399 38409277
    854968 8pkl:f (3.09) BS01 rna ? GO:0000027 ... P0AG55 38409277
    854969 8pkl:g (3.09) BS01 rna ? GO:0000027 ... P0A7N9 38409277
    854970 8pkl:h (3.09) BS01 rna ? GO:0000027 ... P0ADY7 38409277
    854971 8pkl:h (3.09) BS02 rna ? GO:0000027 ... P0ADY7 38409277
    854972 8pkl:h (3.09) BS03 rna ? GO:0000027 ... P0ADY7 38409277
    854973 8pkl:i (3.09) BS01 rna ? GO:0002181 ... P0A7R1 38409277
    854974 8pkl:j (3.09) BS01 rna ? GO:0002181 ... P0A7J3 38409277
    854975 8pkl:k (3.09) BS01 rna ? GO:0000027 ... P0A7J7 38409277
    854976 8pkl:l (3.09) BS01 rna ? GO:0002181 ... P0A7P5 38409277
    854977 8pkl:m (3.09) BS01 rna ? GO:0002181 ... P0AA10 38409277
    854978 8pkl:n (3.09) BS01 rna ? GO:0002181 ... P0ADY3 38409277
    854979 8pkl:n (3.09) BS02 rna ? GO:0002181 ... P0ADY3 38409277
    854980 8pkl:o (3.09) BS01 rna ? GO:0002181 ... P02413 38409277
    854981 8pkl:p (3.09) BS01 rna N/A N/A N/A 38409277
    854982 8pkl:q (3.09) BS01 rna ? GO:0000027 ... P0AG44 38409277
    854983 8pkl:r (3.09) BS01 rna ? GO:0002181 ... P0C018 38409277
    854984 8pkl:r (3.09) BS02 rna ? GO:0002181 ... P0C018 38409277
    854985 8pkl:s (3.09) BS01 rna ? GO:0000027 ... P0A7K6 38409277
    854986 8pkl:s (3.09) BS02 rna ? GO:0000027 ... P0A7K6 38409277
    854987 8pkl:t (3.09) BS01 rna ? GO:0000027 ... P0A7L3 38409277
    854988 8pkl:u (3.09) BS01 rna ? GO:0002181 ... P0AG48 38409277
    854989 8pkl:v (3.09) BS01 rna ? GO:0002181 ... P61175 38409277
    854990 8pkl:w (3.09) BS01 rna ? GO:0000027 ... P0ADZ0 38409277
    854991 8pkl:x (3.09) BS01 rna ? GO:0000027 ... P60624 38409277
    854992 8pkl:y (3.09) BS01 rna ? GO:0000027 ... P68919 38409277
    854993 8pkl:y (3.09) BS02 rna ? GO:0000027 ... P68919 38409277
    854994 8pkl:z (3.09) BS01 rna ? GO:0000027 ... P0A7L8 38409277
    854995 8pkl:z (3.09) BS02 rna ? GO:0000027 ... P0A7L8 38409277
    854996 8pkl:z (3.09) BS03 rna ? GO:0000027 ... P0A7L8 38409277
    854997 8pkm:R (2.9) BS01 CLR ? GO:0001586 ... P08908 N/A
    854998 8pkm:R (2.9) BS02 T7M ? GO:0001586 ... P08908 N/A
    854999 8pkm:R (2.9) BS03 ZKV ? GO:0001586 ... P08908 N/A
    855000 8pkn:A (2.26) BS01 117 N/A N/A P04035 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).