SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    855001 8p3m:G (2.07) BS01 CU ? N/A W0DP94 N/A
    855002 8p3m:G (2.07) BS02 CU ? N/A W0DP94 N/A
    855003 8p3m:J (2.07) BS01 CU ? N/A W0DP94 N/A
    855004 8p3m:J (2.07) BS02 CU ? N/A W0DP94 N/A
    855005 8p3m:M (2.07) BS01 CU ? N/A W0DP94 N/A
    855006 8p3m:M (2.07) BS02 CU ? N/A W0DP94 N/A
    855007 8p3m:P (2.07) BS01 CU ? N/A W0DP94 N/A
    855008 8p3m:P (2.07) BS02 CU ? N/A W0DP94 N/A
    855009 8p3m:S (2.07) BS01 CU ? N/A W0DP94 N/A
    855010 8p3m:S (2.07) BS02 CU ? N/A W0DP94 N/A
    855011 8p3m:V (2.07) BS01 CU ? N/A W0DP94 N/A
    855012 8p3m:V (2.07) BS02 CU ? N/A W0DP94 N/A
    855013 8p3m:Y (2.07) BS01 CU ? N/A W0DP94 N/A
    855014 8p3m:Y (2.07) BS02 CU ? N/A W0DP94 N/A
    855015 8p3m:e (2.07) BS01 CU ? N/A W0DP94 N/A
    855016 8p3m:e (2.07) BS02 CU ? N/A W0DP94 N/A
    855017 8p3m:h (2.07) BS01 CU ? N/A W0DP94 N/A
    855018 8p3m:h (2.07) BS02 CU ? N/A W0DP94 N/A
    855019 8p3m:k (2.07) BS01 CU ? N/A W0DP94 N/A
    855020 8p3m:k (2.07) BS02 CU ? N/A W0DP94 N/A
    855021 8p3m:x (2.07) BS01 CU ? N/A W0DP94 N/A
    855022 8p3m:x (2.07) BS02 CU ? N/A W0DP94 N/A
    855023 8p3n:A (2.0) BS01 ADZ 2.7.13.3 GO:0016310 ... Q56310 N/A
    855024 8p3n:B (2.0) BS01 ADZ 2.7.13.3 GO:0016310 ... Q56310 N/A
    855025 8p3r:A (1.9) BS01 WUT 2.7.13.3 GO:0016310 ... Q56310 N/A
    855026 8p3r:B (1.9) BS01 WUT 2.7.13.3 GO:0016310 ... Q56310 N/A
    855027 8p41:A (1.83) BS01 WYC 2.4.1.-
    3.2.1.-
    3.2.1.45
    3.2.1.46
    GO:0004336 ... P04062 38381042
    855028 8p41:A (1.83) BS02 WYC 2.4.1.-
    3.2.1.-
    3.2.1.45
    3.2.1.46
    GO:0004336 ... P04062 38381042
    855029 8p41:B (1.83) BS01 WYC 2.4.1.-
    3.2.1.-
    3.2.1.45
    3.2.1.46
    GO:0004336 ... P04062 38381042
    855030 8p41:B (1.83) BS02 WYC 2.4.1.-
    3.2.1.-
    3.2.1.45
    3.2.1.46
    GO:0004336 ... P04062 38381042
    855031 8p42:A (2.64) BS01 WRX 5.2.1.8 GO:0003755 ... Q09734 39976355
    855032 8p42:D (2.64) BS01 WRX 5.2.1.8 GO:0003755 ... Q09734 39976355
    855033 8p43:A (2.43) BS01 peptide N/A N/A N/A N/A
    855034 8p44:A (1.93) BS01 WY8 ? GO:0004518 ... A0A7H0DNF0 38325369
    855035 8p44:A (1.93) BS02 WY8 ? GO:0004518 ... A0A7H0DNF0 38325369
    855036 8p44:B (1.93) BS01 WY8 ? GO:0004518 ... A0A7H0DNF0 38325369
    855037 8p44:B (1.93) BS02 WY8 ? GO:0004518 ... A0A7H0DNF0 38325369
    855038 8p44:C (1.93) BS01 WY8 ? GO:0004518 ... A0A7H0DNF0 38325369
    855039 8p44:C (1.93) BS02 WY8 ? GO:0004518 ... A0A7H0DNF0 38325369
    855040 8p44:D (1.93) BS01 WY8 ? GO:0004518 ... A0A7H0DNF0 38325369
    855041 8p44:D (1.93) BS02 WY8 ? GO:0004518 ... A0A7H0DNF0 38325369
    855042 8p45:A (3.23) BS01 WY8 ? GO:0002218 ... Q86WV6 38325369
    855043 8p46:A (1.77) BS01 FE 1.21.3.1 GO:0005506 ... P05326 N/A
    855044 8p46:A (1.77) BS02 IP1 1.21.3.1 GO:0005506 ... P05326 N/A
    855045 8p47:A (1.56) BS01 ACV 1.21.3.1 GO:0005506 ... P05326 N/A
    855046 8p47:A (1.56) BS02 FE 1.21.3.1 GO:0005506 ... P05326 N/A
    855047 8p48:A (1.63) BS01 ACV 1.21.3.1 GO:0005506 ... P05326 N/A
    855048 8p48:A (1.63) BS02 FE 1.21.3.1 GO:0005506 ... P05326 N/A
    855049 8p4a:A (3.6) BS01 rna 2.7.7.6 GO:0001172 ... A0A7M4DUC2 37369200
    855050 8p4a:A (3.6) BS02 dna 2.7.7.6 GO:0001172 ... A0A7M4DUC2 37369200
    855051 8p4a:A (3.6) BS03 MG 2.7.7.6 GO:0001172 ... A0A7M4DUC2 37369200
    855052 8p4a:A (3.6) BS04 ZN 2.7.7.6 GO:0001172 ... A0A7M4DUC2 37369200
    855053 8p4a:A (3.6) BS05 ZN 2.7.7.6 GO:0001172 ... A0A7M4DUC2 37369200
    855054 8p4a:B (3.6) BS01 rna 2.7.7.6 GO:0000781 ... I3LGP4 37369200
    855055 8p4a:B (3.6) BS02 dna 2.7.7.6 GO:0000781 ... I3LGP4 37369200
    855056 8p4a:B (3.6) BS03 ZN 2.7.7.6 GO:0000781 ... I3LGP4 37369200
    855057 8p4a:C (3.6) BS01 ZN ? GO:0003677 ... I3LCH3 37369200
    855058 8p4a:E (3.6) BS01 dna ? GO:0003677 ... I3LSI7 37369200
    855059 8p4a:I (3.6) BS01 ZN ? GO:0001193 ... P60899 37369200
    855060 8p4a:I (3.6) BS02 ZN ? GO:0001193 ... P60899 37369200
    855061 8p4a:J (3.6) BS01 ZN ? GO:0003677 ... A0A8W4F9W9 37369200
    855062 8p4a:L (3.6) BS01 ZN ? GO:0001650 ... A0A4X1TRS6 37369200
    855063 8p4a:M (3.6) BS01 rna 2.7.7.50
    3.6.1.74
    GO:0003824 ... O60942 37369200
    855064 8p4b:A (3.2) BS01 rna 2.7.7.6 GO:0000974 ... P11414 37369200
    855065 8p4b:A (3.2) BS02 dna 2.7.7.6 GO:0000974 ... P11414 37369200
    855066 8p4b:A (3.2) BS03 ZN 2.7.7.6 GO:0000974 ... P11414 37369200
    855067 8p4b:A (3.2) BS04 ZN 2.7.7.6 GO:0000974 ... P11414 37369200
    855068 8p4b:A (3.2) BS05 MG 2.7.7.6 GO:0000974 ... P11414 37369200
    855069 8p4b:B (3.2) BS01 rna 2.7.7.6 GO:0000781 ... I3LGP4 37369200
    855070 8p4b:B (3.2) BS02 dna 2.7.7.6 GO:0000781 ... I3LGP4 37369200
    855071 8p4b:B (3.2) BS03 ZN 2.7.7.6 GO:0000781 ... I3LGP4 37369200
    855072 8p4b:C (3.2) BS01 ZN ? GO:0003677 ... I3LCH3 37369200
    855073 8p4b:E (3.2) BS01 dna ? GO:0003677 ... I3LSI7 37369200
    855074 8p4b:I (3.2) BS01 ZN ? GO:0001193 ... P60899 37369200
    855075 8p4b:I (3.2) BS02 ZN ? GO:0001193 ... P60899 37369200
    855076 8p4b:J (3.2) BS01 ZN ? GO:0003677 ... A0A8W4F9W9 37369200
    855077 8p4b:L (3.2) BS01 ZN ? GO:0001650 ... A0A4X1TRS6 37369200
    855078 8p4b:M (3.2) BS01 rna 2.7.7.50
    3.6.1.74
    GO:0003824 ... O60942 37369200
    855079 8p4c:A (3.8) BS01 dna 2.7.7.6 GO:0000974 ... P11414 37369200
    855080 8p4c:A (3.8) BS02 rna 2.7.7.6 GO:0000974 ... P11414 37369200
    855081 8p4c:A (3.8) BS03 ZN 2.7.7.6 GO:0000974 ... P11414 37369200
    855082 8p4c:A (3.8) BS04 ZN 2.7.7.6 GO:0000974 ... P11414 37369200
    855083 8p4c:A (3.8) BS05 MG 2.7.7.6 GO:0000974 ... P11414 37369200
    855084 8p4c:B (3.8) BS01 dna 2.7.7.6 GO:0000781 ... I3LGP4 37369200
    855085 8p4c:B (3.8) BS02 dna 2.7.7.6 GO:0000781 ... I3LGP4 37369200
    855086 8p4c:B (3.8) BS03 rna 2.7.7.6 GO:0000781 ... I3LGP4 37369200
    855087 8p4d:A (3.6) BS01 dna 2.7.7.6 GO:0000974 ... P11414 37369200
    855088 8p4d:A (3.6) BS02 rna 2.7.7.6 GO:0000974 ... P11414 37369200
    855089 8p4d:B (3.6) BS01 dna 2.7.7.6 GO:0000781 ... I3LGP4 37369200
    855090 8p4d:B (3.6) BS02 dna 2.7.7.6 GO:0000781 ... I3LGP4 37369200
    855091 8p4d:B (3.6) BS03 rna 2.7.7.6 GO:0000781 ... I3LGP4 37369200
    855092 8p4e:A (3.9) BS01 rna 2.7.7.48
    2.7.7.6
    3.1.13.-
    GO:0000974 ... P11414 37369200
    855093 8p4e:A (3.9) BS02 dna 2.7.7.48
    2.7.7.6
    3.1.13.-
    GO:0000974 ... P11414 37369200
    855094 8p4e:A (3.9) BS03 dna 2.7.7.48
    2.7.7.6
    3.1.13.-
    GO:0000974 ... P11414 37369200
    855095 8p4e:A (3.9) BS04 MG 2.7.7.48
    2.7.7.6
    3.1.13.-
    GO:0000974 ... P11414 37369200
    855096 8p4e:A (3.9) BS05 ZN 2.7.7.48
    2.7.7.6
    3.1.13.-
    GO:0000974 ... P11414 37369200
    855097 8p4e:B (3.9) BS01 rna 2.7.7.6 GO:0000781 ... I3LGP4 37369200
    855098 8p4e:B (3.9) BS02 dna 2.7.7.6 GO:0000781 ... I3LGP4 37369200
    855099 8p4e:B (3.9) BS03 dna 2.7.7.6 GO:0000781 ... I3LGP4 37369200
    855100 8p4e:B (3.9) BS04 ZN 2.7.7.6 GO:0000781 ... I3LGP4 37369200
    855101 8p4e:C (3.9) BS01 ZN ? GO:0003677 ... I3LCH3 37369200
    855102 8p4e:I (3.9) BS01 ZN ? GO:0001193 ... P60899 37369200
    855103 8p4e:I (3.9) BS02 ZN ? GO:0001193 ... P60899 37369200
    855104 8p4e:J (3.9) BS01 ZN ? GO:0003677 ... A0A8W4F9W9 37369200
    855105 8p4e:L (3.9) BS01 ZN ? GO:0001650 ... A0A4X1TRS6 37369200
    855106 8p4e:O (3.9) BS01 rna 2.1.1.57 GO:0003676 ... Q8N1G2 37369200
    855107 8p4f:A (4.0) BS01 rna 2.7.7.6 GO:0000974 ... P11414 37369200
    855108 8p4f:A (4.0) BS02 dna 2.7.7.6 GO:0000974 ... P11414 37369200
    855109 8p4f:A (4.0) BS03 dna 2.7.7.6 GO:0000974 ... P11414 37369200
    855110 8p4f:A (4.0) BS04 ZN 2.7.7.6 GO:0000974 ... P11414 37369200
    855111 8p4f:A (4.0) BS05 MG 2.7.7.6 GO:0000974 ... P11414 37369200
    855112 8p4f:B (4.0) BS01 rna 2.7.7.6 GO:0000781 ... I3LGP4 37369200
    855113 8p4f:B (4.0) BS02 dna 2.7.7.6 GO:0000781 ... I3LGP4 37369200
    855114 8p4f:B (4.0) BS03 dna 2.7.7.6 GO:0000781 ... I3LGP4 37369200
    855115 8p4f:B (4.0) BS04 ZN 2.7.7.6 GO:0000781 ... I3LGP4 37369200
    855116 8p4f:E (4.0) BS01 dna ? GO:0003677 ... I3LSI7 37369200
    855117 8p4f:I (4.0) BS01 ZN ? GO:0001193 ... P60899 37369200
    855118 8p4f:I (4.0) BS02 ZN ? GO:0001193 ... P60899 37369200
    855119 8p4f:J (4.0) BS01 ZN ? GO:0003677 ... A0A4X1VYD0 37369200
    855120 8p4f:L (4.0) BS01 ZN ? GO:0001650 ... A0A4X1TRS6 37369200
    855121 8p4f:O (4.0) BS01 rna 2.1.1.57 GO:0003676 ... Q8N1G2 37369200
    855122 8p4f:O (4.0) BS02 MGT 2.1.1.57 GO:0003676 ... Q8N1G2 37369200
    855123 8p4f:O (4.0) BS03 SAM 2.1.1.57 GO:0003676 ... Q8N1G2 37369200
    855124 8p4f:Y (4.0) BS01 ZN ? GO:0000122 ... P63272 37369200
    855125 8p4f:Z (4.0) BS01 rna ? GO:0000122 ... O00267 37369200
    855126 8p4g:A (2.59) BS01 CU ? GO:0005507 ... Q8ZWA8 38227199
    855127 8p4g:A (2.59) BS02 CU ? GO:0005507 ... Q8ZWA8 38227199
    855128 8p4g:A (2.59) BS03 CU ? GO:0005507 ... Q8ZWA8 38227199
    855129 8p4g:A (2.59) BS04 CU ? GO:0005507 ... Q8ZWA8 38227199
    855130 8p4g:B (2.59) BS01 CU ? GO:0005507 ... Q8ZWA8 38227199
    855131 8p4g:B (2.59) BS02 CU ? GO:0005507 ... Q8ZWA8 38227199
    855132 8p4g:B (2.59) BS03 CU ? GO:0005507 ... Q8ZWA8 38227199
    855133 8p4g:B (2.59) BS04 CU ? GO:0005507 ... Q8ZWA8 38227199
    855134 8p4h:A (1.71) BS01 UM6 2.5.1.6 GO:0004478 ... P31153 37591318
    855135 8p4h:A (1.71) BS02 SAM 2.5.1.6 GO:0004478 ... P31153 37591318
    855136 8p4h:A (1.71) BS03 UM6 2.5.1.6 GO:0004478 ... P31153 37591318
    855137 8p4h:B (1.71) BS01 UM6 2.5.1.6 GO:0004478 ... P31153 37591318
    855138 8p4h:B (1.71) BS02 MG 2.5.1.6 GO:0004478 ... P31153 37591318
    855139 8p4h:B (1.71) BS03 SAM 2.5.1.6 GO:0004478 ... P31153 37591318
    855140 8p4h:B (1.71) BS04 UM6 2.5.1.6 GO:0004478 ... P31153 37591318
    855141 8p4h:C (1.71) BS01 UM6 2.5.1.6 GO:0004478 ... P31153 37591318
    855142 8p4h:C (1.71) BS02 SAM 2.5.1.6 GO:0004478 ... P31153 37591318
    855143 8p4h:C (1.71) BS03 UM6 2.5.1.6 GO:0004478 ... P31153 37591318
    855144 8p4h:D (1.71) BS01 UM6 2.5.1.6 GO:0004478 ... P31153 37591318
    855145 8p4h:D (1.71) BS02 SAM 2.5.1.6 GO:0004478 ... P31153 37591318
    855146 8p4h:D (1.71) BS03 MG 2.5.1.6 GO:0004478 ... P31153 37591318
    855147 8p4h:D (1.71) BS04 UM6 2.5.1.6 GO:0004478 ... P31153 37591318
    855148 8p4m:A (2.5) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    855149 8p4m:A (2.5) BS02 BEF N/A GO:0000287 ... P0A6F5 39169181
    855150 8p4m:B (2.5) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    855151 8p4m:B (2.5) BS02 BEF N/A GO:0000287 ... P0A6F5 39169181
    855152 8p4m:C (2.5) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    855153 8p4m:C (2.5) BS02 BEF N/A GO:0000287 ... P0A6F5 39169181
    855154 8p4m:D (2.5) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    855155 8p4m:D (2.5) BS02 BEF N/A GO:0000287 ... P0A6F5 39169181
    855156 8p4m:E (2.5) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    855157 8p4m:E (2.5) BS02 BEF N/A GO:0000287 ... P0A6F5 39169181
    855158 8p4m:F (2.5) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    855159 8p4m:F (2.5) BS02 BEF N/A GO:0000287 ... P0A6F5 39169181
    855160 8p4m:G (2.5) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    855161 8p4m:G (2.5) BS02 BEF N/A GO:0000287 ... P0A6F5 39169181
    855162 8p4n:A (2.9) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    855163 8p4n:A (2.9) BS02 BEF N/A GO:0000287 ... P0A6F5 39169181
    855164 8p4n:B (2.9) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    855165 8p4n:B (2.9) BS02 BEF N/A GO:0000287 ... P0A6F5 39169181
    855166 8p4n:C (2.9) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    855167 8p4n:C (2.9) BS02 BEF N/A GO:0000287 ... P0A6F5 39169181
    855168 8p4n:D (2.9) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    855169 8p4n:D (2.9) BS02 BEF N/A GO:0000287 ... P0A6F5 39169181
    855170 8p4n:E (2.9) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    855171 8p4n:E (2.9) BS02 BEF N/A GO:0000287 ... P0A6F5 39169181
    855172 8p4n:F (2.9) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    855173 8p4n:F (2.9) BS02 BEF N/A GO:0000287 ... P0A6F5 39169181
    855174 8p4n:G (2.9) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    855175 8p4n:G (2.9) BS02 BEF N/A GO:0000287 ... P0A6F5 39169181
    855176 8p4o:A (3.04) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    855177 8p4o:A (3.04) BS02 BEF N/A GO:0000287 ... P0A6F5 39169181
    855178 8p4o:B (3.04) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    855179 8p4o:B (3.04) BS02 BEF N/A GO:0000287 ... P0A6F5 39169181
    855180 8p4o:C (3.04) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    855181 8p4o:D (3.04) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    855182 8p4o:D (3.04) BS02 BEF N/A GO:0000287 ... P0A6F5 39169181
    855183 8p4o:E (3.04) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    855184 8p4o:F (3.04) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    855185 8p4o:F (3.04) BS02 BEF N/A GO:0000287 ... P0A6F5 39169181
    855186 8p4o:G (3.04) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    855187 8p4o:G (3.04) BS02 BEF N/A GO:0000287 ... P0A6F5 39169181
    855188 8p4p:A (9.6) BS01 ATP N/A GO:0005524 ... N/A 39169181
    855189 8p4p:B (9.6) BS01 ATP N/A GO:0005524 ... N/A 39169181
    855190 8p4p:C (9.6) BS01 ATP N/A GO:0005524 ... N/A 39169181
    855191 8p4p:D (9.6) BS01 ATP N/A GO:0005524 ... N/A 39169181
    855192 8p4p:E (9.6) BS01 ATP N/A GO:0005524 ... N/A 39169181
    855193 8p4p:F (9.6) BS01 ATP N/A GO:0005524 ... N/A 39169181
    855194 8p4p:G (9.6) BS01 ATP N/A GO:0005524 ... N/A 39169181
    855195 8p4p:H (9.6) BS01 ADP N/A GO:0005524 ... N/A 39169181
    855196 8p4p:I (9.6) BS01 ADP N/A GO:0005524 ... N/A 39169181
    855197 8p4p:J (9.6) BS01 ADP N/A GO:0005524 ... N/A 39169181
    855198 8p4p:K (9.6) BS01 ADP N/A GO:0005524 ... N/A 39169181
    855199 8p4p:L (9.6) BS01 ADP N/A GO:0005524 ... N/A 39169181
    855200 8p4p:M (9.6) BS01 ADP N/A GO:0005524 ... N/A 39169181

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).