SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    856201 8p7k:B (1.929) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    856202 8p7k:B (1.929) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    856203 8p7k:B (1.929) BS03 E5N 3.1.8.1 GO:0004063 ... P0A434 37860961
    856204 8p7l:J (2.1) BS01 peptide 2.7.11.22
    2.7.11.23
    GO:0000439 ... P50613 38480681
    856205 8p7l:J (2.1) BS02 WD9 2.7.11.22
    2.7.11.23
    GO:0000439 ... P50613 38480681
    856206 8p7m:A (1.85) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    856207 8p7m:A (1.85) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    856208 8p7m:A (1.85) BS03 GB 3.1.8.1 GO:0004063 ... P0A434 37860961
    856209 8p7n:A (3.2) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    856210 8p7n:A (3.2) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    856211 8p7n:B (3.2) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    856212 8p7n:B (3.2) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    856213 8p7n:C (3.2) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    856214 8p7n:C (3.2) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    856215 8p7n:D (3.2) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    856216 8p7n:D (3.2) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    856217 8p7o:A (1.7) BS01 FE 1.21.3.1 GO:0005506 ... P05326 N/A
    856218 8p7o:A (1.7) BS02 X5L 1.21.3.1 GO:0005506 ... P05326 N/A
    856219 8p7p:A (1.8) BS01 X2R 1.21.3.1 GO:0005506 ... P05326 N/A
    856220 8p7p:A (1.8) BS02 FE 1.21.3.1 GO:0005506 ... P05326 N/A
    856221 8p7q:A (1.77) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    856222 8p7q:A (1.77) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    856223 8p7q:A (1.77) BS03 E8N 3.1.8.1 GO:0004063 ... P0A434 37860961
    856224 8p7q:A (1.77) BS04 UCJ 3.1.8.1 GO:0004063 ... P0A434 37860961
    856225 8p7r:A (1.85) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    856226 8p7r:A (1.85) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    856227 8p7r:A (1.85) BS03 GB 3.1.8.1 GO:0004063 ... P0A434 37860961
    856228 8p7r:A (1.85) BS04 E8N 3.1.8.1 GO:0004063 ... P0A434 37860961
    856229 8p7s:A (1.77) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    856230 8p7s:A (1.77) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    856231 8p7s:A (1.77) BS03 E8N 3.1.8.1 GO:0004063 ... P0A434 37860961
    856232 8p7s:A (1.77) BS04 VX 3.1.8.1 GO:0004063 ... P0A434 37860961
    856233 8p7t:A (1.8) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    856234 8p7t:A (1.8) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    856235 8p7t:A (1.8) BS03 VX 3.1.8.1 GO:0004063 ... P0A434 37860961
    856236 8p7t:A (1.8) BS04 E8N 3.1.8.1 GO:0004063 ... P0A434 37860961
    856237 8p7t:A (1.8) BS05 VX 3.1.8.1 GO:0004063 ... P0A434 37860961
    856238 8p7u:A (1.38) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    856239 8p7u:A (1.38) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    856240 8p7u:A (1.38) BS03 X3T 3.1.8.1 GO:0004063 ... P0A434 37860961
    856241 8p7u:A (1.38) BS04 E8N 3.1.8.1 GO:0004063 ... P0A434 37860961
    856242 8p7v:A (1.737) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    856243 8p7v:A (1.737) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    856244 8p7v:A (1.737) BS03 E8N 3.1.8.1 GO:0004063 ... P0A434 37860961
    856245 8p7v:A (1.737) BS04 GB 3.1.8.1 GO:0004063 ... P0A434 37860961
    856246 8p7x:0 (3.03) BS01 rna N/A GO:0003735 ... P78006 39668257
    856247 8p7x:1 (3.03) BS01 rna N/A GO:0003735 ... P75447 39668257
    856248 8p7x:2 (3.03) BS01 rna N/A GO:0003735 ... P52864 39668257
    856249 8p7x:2 (3.03) BS02 ZN N/A GO:0003735 ... P52864 39668257
    856250 8p7x:A (3.03) BS01 rna N/A GO:0003735 ... P75560 39668257
    856251 8p7x:B (3.03) BS01 rna N/A GO:0003676 ... P41205 39668257
    856252 8p7x:B (3.03) BS02 rna N/A GO:0003676 ... P41205 39668257
    856253 8p7x:C (3.03) BS01 rna N/A GO:0003723 ... P46775 39668257
    856254 8p7x:C (3.03) BS02 rna N/A GO:0003723 ... P46775 39668257
    856255 8p7x:D (3.03) BS01 rna N/A GO:0003723 ... Q50301 39668257
    856256 8p7x:D (3.03) BS02 rna N/A GO:0003723 ... Q50301 39668257
    856257 8p7x:E (3.03) BS01 rna N/A GO:0003735 ... P75543 39668257
    856258 8p7x:F (3.03) BS01 rna N/A GO:0000049 ... P75545 39668257
    856259 8p7x:F (3.03) BS02 rna N/A GO:0000049 ... P75545 39668257
    856260 8p7x:F (3.03) BS03 rna N/A GO:0000049 ... P75545 39668257
    856261 8p7x:G (3.03) BS01 rna N/A GO:0003735 ... Q50304 39668257
    856262 8p7x:H (3.03) BS01 rna N/A GO:0003723 ... P75179 39668257
    856263 8p7x:I (3.03) BS01 rna N/A GO:0000049 ... P75581 39668257
    856264 8p7x:J (3.03) BS01 rna N/A GO:0003735 ... Q50296 39668257
    856265 8p7x:K (3.03) BS01 rna N/A GO:0000049 ... P75546 39668257
    856266 8p7x:L (3.03) BS01 rna N/A GO:0000049 ... Q50297 39668257
    856267 8p7x:L (3.03) BS02 rna N/A GO:0000049 ... Q50297 39668257
    856268 8p7x:L (3.03) BS03 rna N/A GO:0000049 ... Q50297 39668257
    856269 8p7x:L (3.03) BS04 rna N/A GO:0000049 ... Q50297 39668257
    856270 8p7x:M (3.03) BS01 rna N/A GO:0003735 ... Q50305 39668257
    856271 8p7x:M (3.03) BS02 ZN N/A GO:0003735 ... Q50305 39668257
    856272 8p7x:N (3.03) BS01 rna N/A GO:0003735 ... P75173 39668257
    856273 8p7x:N (3.03) BS02 rna N/A GO:0003735 ... P75173 39668257
    856274 8p7x:O (3.03) BS01 rna N/A GO:0003735 ... P75131 39668257
    856275 8p7x:P (3.03) BS01 rna N/A GO:0003735 ... Q50309 39668257
    856276 8p7x:Q (3.03) BS01 rna N/A GO:0003735 ... P75541 39668257
    856277 8p7x:Q (3.03) BS02 ZN N/A GO:0003735 ... P75541 39668257
    856278 8p7x:R (3.03) BS01 rna N/A GO:0000028 ... P75576 39668257
    856279 8p7x:S (3.03) BS01 rna N/A GO:0003723 ... P75237 39668257
    856280 8p7x:T (3.03) BS01 rna N/A GO:0003735 ... P57079 39668257
    856281 8p7x:X (3.03) BS01 rna N/A GO:0003755 ... P75454 39668257
    856282 8p7x:Z (3.03) BS01 rna N/A N/A N/A 39668257
    856283 8p7x:Z (3.03) BS02 CLM N/A N/A N/A 39668257
    856284 8p7x:a (3.03) BS01 rna N/A GO:0002181 ... P75577 39668257
    856285 8p7x:b (3.03) BS01 rna N/A GO:0003735 ... P75580 39668257
    856286 8p7x:c (3.03) BS01 rna N/A GO:0003735 ... P75579 39668257
    856287 8p7x:d (3.03) BS01 rna N/A GO:0000049 ... Q50306 39668257
    856288 8p7x:d (3.03) BS02 rna N/A GO:0000049 ... Q50306 39668257
    856289 8p7x:d (3.03) BS03 rna N/A GO:0000049 ... Q50306 39668257
    856290 8p7x:e (3.03) BS01 rna N/A GO:0002181 ... Q50303 39668257
    856291 8p7x:f (3.03) BS01 rna N/A GO:0003735 ... P75540 39668257
    856292 8p7x:g (3.03) BS01 rna N/A GO:0003735 ... P75240 39668257
    856293 8p7x:h (3.03) BS01 rna N/A GO:0003735 ... P75550 39668257
    856294 8p7x:i (3.03) BS01 rna N/A GO:0003729 ... P75178 39668257
    856295 8p7x:j (3.03) BS01 rna N/A GO:0003735 ... Q50308 39668257
    856296 8p7x:j (3.03) BS02 rna N/A GO:0003735 ... Q50308 39668257
    856297 8p7x:k (3.03) BS01 rna N/A GO:0003735 ... Q50300 39668257
    856298 8p7x:l (3.03) BS01 rna N/A GO:0003735 ... P41204 39668257
    856299 8p7x:l (3.03) BS02 rna N/A GO:0003735 ... P41204 39668257
    856300 8p7x:m (3.03) BS01 rna N/A GO:0003735 ... Q59547 39668257
    856301 8p7x:n (3.03) BS01 rna N/A GO:0003735 ... Q50302 39668257
    856302 8p7x:n (3.03) BS02 rna N/A GO:0003735 ... Q50302 39668257
    856303 8p7x:o (3.03) BS01 rna N/A GO:0003735 ... P75133 39668257
    856304 8p7x:o (3.03) BS02 rna N/A GO:0003735 ... P75133 39668257
    856305 8p7x:p (3.03) BS01 rna N/A GO:0000027 ... P78023 39668257
    856306 8p7x:q (3.03) BS01 rna N/A GO:0003723 ... P78026 39668257
    856307 8p7x:r (3.03) BS01 rna N/A GO:0003735 ... P75575 39668257
    856308 8p7x:r (3.03) BS02 N2P N/A GO:0003735 ... P75575 39668257
    856309 8p7x:s (3.03) BS01 rna N/A GO:0003735 ... P75578 39668257
    856310 8p7x:t (3.03) BS01 rna N/A GO:0003723 ... Q50307 39668257
    856311 8p7x:u (3.03) BS01 rna N/A GO:0003735 ... P75458 39668257
    856312 8p7x:u (3.03) BS02 rna N/A GO:0003735 ... P75458 39668257
    856313 8p7x:v (3.03) BS01 rna N/A GO:0003735 ... P75171 39668257
    856314 8p7x:w (3.03) BS01 rna N/A GO:0003735 ... Q50310 39668257
    856315 8p7x:x (3.03) BS01 rna N/A GO:0003735 ... P78020 39668257
    856316 8p7x:y (3.03) BS01 rna N/A GO:0003735 ... P75238 39668257
    856317 8p7x:y (3.03) BS02 ZN N/A GO:0003735 ... P75238 39668257
    856318 8p7x:z (3.03) BS01 rna N/A GO:0003735 ... P78015 39668257
    856319 8p7y:0 (3.7) BS01 rna N/A GO:0003735 ... P78006 39668257
    856320 8p7y:1 (3.7) BS01 rna N/A GO:0003735 ... P75447 39668257
    856321 8p7y:2 (3.7) BS01 rna N/A GO:0003735 ... P52864 39668257
    856322 8p7y:2 (3.7) BS02 ZN N/A GO:0003735 ... P52864 39668257
    856323 8p7y:A (3.7) BS01 rna N/A GO:0003735 ... P75560 39668257
    856324 8p7y:B (3.7) BS01 rna N/A GO:0003676 ... P41205 39668257
    856325 8p7y:B (3.7) BS02 rna N/A GO:0003676 ... P41205 39668257
    856326 8p7y:C (3.7) BS01 rna N/A GO:0003723 ... P46775 39668257
    856327 8p7y:C (3.7) BS02 rna N/A GO:0003723 ... P46775 39668257
    856328 8p7y:D (3.7) BS01 rna N/A GO:0003723 ... Q50301 39668257
    856329 8p7y:D (3.7) BS02 rna N/A GO:0003723 ... Q50301 39668257
    856330 8p7y:E (3.7) BS01 rna N/A GO:0003735 ... P75543 39668257
    856331 8p7y:F (3.7) BS01 rna N/A GO:0000049 ... P75545 39668257
    856332 8p7y:F (3.7) BS02 rna N/A GO:0000049 ... P75545 39668257
    856333 8p7y:F (3.7) BS03 rna N/A GO:0000049 ... P75545 39668257
    856334 8p7y:G (3.7) BS01 rna N/A GO:0003735 ... Q50304 39668257
    856335 8p7y:H (3.7) BS01 rna N/A GO:0003723 ... P75179 39668257
    856336 8p7y:H (3.7) BS02 rna N/A GO:0003723 ... P75179 39668257
    856337 8p7y:I (3.7) BS01 rna N/A GO:0000049 ... P75581 39668257
    856338 8p7y:J (3.7) BS01 rna N/A GO:0003735 ... Q50296 39668257
    856339 8p7y:K (3.7) BS01 rna N/A GO:0000049 ... P75546 39668257
    856340 8p7y:L (3.7) BS01 rna N/A GO:0000049 ... Q50297 39668257
    856341 8p7y:L (3.7) BS02 rna N/A GO:0000049 ... Q50297 39668257
    856342 8p7y:L (3.7) BS03 rna N/A GO:0000049 ... Q50297 39668257
    856343 8p7y:L (3.7) BS04 rna N/A GO:0000049 ... Q50297 39668257
    856344 8p7y:M (3.7) BS01 rna N/A GO:0003735 ... Q50305 39668257
    856345 8p7y:M (3.7) BS02 ZN N/A GO:0003735 ... Q50305 39668257
    856346 8p7y:N (3.7) BS01 rna N/A GO:0003735 ... P75173 39668257
    856347 8p7y:N (3.7) BS02 rna N/A GO:0003735 ... P75173 39668257
    856348 8p7y:O (3.7) BS01 rna N/A GO:0003735 ... P75131 39668257
    856349 8p7y:P (3.7) BS01 rna N/A GO:0003735 ... Q50309 39668257
    856350 8p7y:P (3.7) BS02 MG N/A GO:0003735 ... Q50309 39668257
    856351 8p7y:Q (3.7) BS01 rna N/A GO:0003735 ... P75541 39668257
    856352 8p7y:Q (3.7) BS02 ZN N/A GO:0003735 ... P75541 39668257
    856353 8p7y:R (3.7) BS01 rna N/A GO:0000028 ... P75576 39668257
    856354 8p7y:S (3.7) BS01 rna N/A GO:0003723 ... P75237 39668257
    856355 8p7y:T (3.7) BS01 rna N/A GO:0003735 ... P57079 39668257
    856356 8p7y:U (3.7) BS01 rna N/A GO:0003723 ... P46775 39668257
    856357 8p7y:X (3.7) BS01 rna N/A GO:0003755 ... P75454 39668257
    856358 8p7y:Z (3.7) BS01 rna N/A N/A N/A 39668257
    856359 8p7y:Z (3.7) BS02 CLM N/A N/A N/A 39668257
    856360 8p7y:a (3.7) BS01 rna N/A GO:0002181 ... P75577 39668257
    856361 8p7y:b (3.7) BS01 rna N/A GO:0003735 ... P75580 39668257
    856362 8p7y:b (3.7) BS02 MG N/A GO:0003735 ... P75580 39668257
    856363 8p7y:c (3.7) BS01 rna N/A GO:0003735 ... P75579 39668257
    856364 8p7y:d (3.7) BS01 rna N/A GO:0000049 ... Q50306 39668257
    856365 8p7y:d (3.7) BS02 rna N/A GO:0000049 ... Q50306 39668257
    856366 8p7y:d (3.7) BS03 rna N/A GO:0000049 ... Q50306 39668257
    856367 8p7y:e (3.7) BS01 rna N/A GO:0002181 ... Q50303 39668257
    856368 8p7y:f (3.7) BS01 rna N/A GO:0003735 ... P75540 39668257
    856369 8p7y:g (3.7) BS01 rna N/A GO:0003735 ... P75240 39668257
    856370 8p7y:h (3.7) BS01 rna N/A GO:0003735 ... P75550 39668257
    856371 8p7y:i (3.7) BS01 rna N/A GO:0003729 ... P75178 39668257
    856372 8p7y:j (3.7) BS01 rna N/A GO:0003735 ... Q50308 39668257
    856373 8p7y:j (3.7) BS02 rna N/A GO:0003735 ... Q50308 39668257
    856374 8p7y:k (3.7) BS01 rna N/A GO:0003735 ... Q50300 39668257
    856375 8p7y:l (3.7) BS01 rna N/A GO:0003735 ... P41204 39668257
    856376 8p7y:l (3.7) BS02 rna N/A GO:0003735 ... P41204 39668257
    856377 8p7y:m (3.7) BS01 rna N/A GO:0003735 ... Q59547 39668257
    856378 8p7y:n (3.7) BS01 rna N/A GO:0003735 ... Q50302 39668257
    856379 8p7y:n (3.7) BS02 rna N/A GO:0003735 ... Q50302 39668257
    856380 8p7y:o (3.7) BS01 rna N/A GO:0003735 ... P75133 39668257
    856381 8p7y:o (3.7) BS02 rna N/A GO:0003735 ... P75133 39668257
    856382 8p7y:p (3.7) BS01 rna N/A GO:0000027 ... P78023 39668257
    856383 8p7y:q (3.7) BS01 rna N/A GO:0003723 ... P78026 39668257
    856384 8p7y:r (3.7) BS01 rna N/A GO:0003735 ... P75575 39668257
    856385 8p7y:s (3.7) BS01 rna N/A GO:0003735 ... P75578 39668257
    856386 8p7y:t (3.7) BS01 rna N/A GO:0003723 ... Q50307 39668257
    856387 8p7y:u (3.7) BS01 rna N/A GO:0003735 ... P75458 39668257
    856388 8p7y:u (3.7) BS02 rna N/A GO:0003735 ... P75458 39668257
    856389 8p7y:v (3.7) BS01 rna N/A GO:0003735 ... P75171 39668257
    856390 8p7y:w (3.7) BS01 rna N/A GO:0003735 ... Q50310 39668257
    856391 8p7y:x (3.7) BS01 rna N/A GO:0003735 ... P78020 39668257
    856392 8p7y:x (3.7) BS02 ZN N/A GO:0003735 ... P78020 39668257
    856393 8p7y:y (3.7) BS01 rna N/A GO:0003735 ... P75238 39668257
    856394 8p7y:y (3.7) BS02 ZN N/A GO:0003735 ... P75238 39668257
    856395 8p7y:z (3.7) BS01 rna N/A GO:0003735 ... P78015 39668257
    856396 8p81:A (2.68) BS01 RMF 2.7.11.22
    2.7.11.23
    GO:0004672 ... Q9NYV4 38016516
    856397 8p82:A (3.36) BS01 ZN 2.3.2.26 GO:0000209 ... O95071 37478846
    856398 8p82:A (3.36) BS02 ZN 2.3.2.26 GO:0000209 ... O95071 37478846
    856399 8p82:A (3.36) BS03 ZN 2.3.2.26 GO:0000209 ... O95071 37478846
    856400 8p82:B (3.36) BS01 ZN 2.3.2.26 GO:0000209 ... O95071 37478846

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).