SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    857001 8pva:j (4.5) BS01 rna ? GO:0002181 ... P0ADY3 38011573
    857002 8pva:j (4.5) BS02 rna ? GO:0002181 ... P0ADY3 38011573
    857003 8pva:k (4.5) BS01 rna ? GO:0002181 ... P02413 38011573
    857004 8pva:l (4.5) BS01 rna ? GO:0000027 ... P0ADY7 38011573
    857005 8pva:l (4.5) BS02 rna ? GO:0000027 ... P0ADY7 38011573
    857006 8pva:l (4.5) BS03 rna ? GO:0000027 ... P0ADY7 38011573
    857007 8pva:m (4.5) BS01 rna ? GO:0000027 ... P0AG44 38011573
    857008 8pva:n (4.5) BS01 rna ? GO:0002181 ... P0C018 38011573
    857009 8pva:n (4.5) BS02 rna ? GO:0002181 ... P0C018 38011573
    857010 8pva:o (4.5) BS01 rna ? GO:0000027 ... P0A7K6 38011573
    857011 8pva:o (4.5) BS02 rna ? GO:0000027 ... P0A7K6 38011573
    857012 8pva:p (4.5) BS01 rna ? GO:0000027 ... P0A7L3 38011573
    857013 8pva:q (4.5) BS01 rna ? GO:0002181 ... P0AG48 38011573
    857014 8pva:r (4.5) BS01 rna ? GO:0002181 ... P61175 38011573
    857015 8pva:s (4.5) BS01 rna ? GO:0000027 ... P0ADZ0 38011573
    857016 8pva:t (4.5) BS01 rna ? GO:0000027 ... P60624 38011573
    857017 8pva:u (4.5) BS01 rna ? GO:0000027 ... P68919 38011573
    857018 8pva:v (4.5) BS01 rna ? GO:0000027 ... P0A7L8 38011573
    857019 8pva:v (4.5) BS02 rna ? GO:0000027 ... P0A7L8 38011573
    857020 8pva:w (4.5) BS01 rna ? GO:0000027 ... P0A7M2 38011573
    857021 8pva:x (4.5) BS01 rna ? GO:0000027 ... P0A7M6 38011573
    857022 8pva:y (4.5) BS01 rna ? GO:0000027 ... P0AG51 38011573
    857023 8pva:y (4.5) BS02 rna ? GO:0000027 ... P0AG51 38011573
    857024 8pva:z (4.5) BS01 rna ? GO:0000027 ... P0A7N4 38011573
    857025 8pvb:A (3.6) BS01 HSM ? GO:0004888 ... P28472 38011573
    857026 8pvb:A (3.6) BS02 V8D ? GO:0004888 ... P28472 38011573
    857027 8pvc:A (2.6) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 38011573
    857028 8pvd:A (3.4) BS01 NDP 1.11.1.6 GO:0000302 ... P04040 38011573
    857029 8pvd:A (3.4) BS02 HEM 1.11.1.6 GO:0000302 ... P04040 38011573
    857030 8pvf:A (2.9) BS01 NAD 1.2.1.12 GO:0000166 ... Q7YYQ9 38011573
    857031 8pvk:CB (2.55) BS01 rna ? N/A G0S7X0 37921038
    857032 8pvk:CF (2.55) BS01 rna ? GO:0000027 ... G0S616 37921038
    857033 8pvk:CH (2.55) BS01 rna ? GO:0005525 ... G0S8F1 37921038
    857034 8pvk:CH (2.55) BS02 rna ? GO:0005525 ... G0S8F1 37921038
    857035 8pvk:CH (2.55) BS03 GTP ? GO:0005525 ... G0S8F1 37921038
    857036 8pvk:CH (2.55) BS04 MG ? GO:0005525 ... G0S8F1 37921038
    857037 8pvk:CI (2.55) BS01 rna ? GO:0003676 ... G0S1H0 37921038
    857038 8pvk:CJ (2.55) BS01 rna ? GO:0000463 ... G0SHX6 37921038
    857039 8pvk:CJ (2.55) BS02 rna ? GO:0000463 ... G0SHX6 37921038
    857040 8pvk:CK (2.55) BS01 rna ? GO:0005634 ... G0S081 37921038
    857041 8pvk:CL (2.55) BS01 rna ? GO:0005525 ... G0SEW3 37921038
    857042 8pvk:CM (2.55) BS01 rna ? GO:0000463 ... G0SFL0 37921038
    857043 8pvk:CM (2.55) BS02 rna ? GO:0000463 ... G0SFL0 37921038
    857044 8pvk:CN (2.55) BS01 rna ? GO:0000054 ... G0S683 37921038
    857045 8pvk:CO (2.55) BS01 rna ? GO:0030687 ... G0SHK0 37921038
    857046 8pvk:CQ (2.55) BS01 rna ? GO:0003735 ... G0S497 37921038
    857047 8pvk:CQ (2.55) BS02 ZN ? GO:0003735 ... G0S497 37921038
    857048 8pvk:Cb (2.55) BS01 rna ? GO:0003676 ... G0SB32 37921038
    857049 8pvk:Cb (2.55) BS02 ZN ? GO:0003676 ... G0SB32 37921038
    857050 8pvk:Cd (2.55) BS01 rna ? GO:0005525 ... G0SBX1 37921038
    857051 8pvk:Cd (2.55) BS02 GTP ? GO:0005525 ... G0SBX1 37921038
    857052 8pvk:Cd (2.55) BS03 MG ? GO:0005525 ... G0SBX1 37921038
    857053 8pvk:Cd (2.55) BS04 MG ? GO:0005525 ... G0SBX1 37921038
    857054 8pvk:Ce (2.55) BS01 rna ? GO:0000027 ... G0S495 37921038
    857055 8pvk:Ce (2.55) BS02 rna ? GO:0000027 ... G0S495 37921038
    857056 8pvk:Ce (2.55) BS03 rna ? GO:0000027 ... G0S495 37921038
    857057 8pvk:Cf (2.55) BS01 rna ? GO:0000027 ... G0SF80 37921038
    857058 8pvk:Cf (2.55) BS02 rna ? GO:0000027 ... G0SF80 37921038
    857059 8pvk:Cg (2.55) BS01 rna ? GO:0005634 ... G0SCH6 37921038
    857060 8pvk:Cz (2.55) BS01 rna ? GO:0005634 ... G0SCP3 37921038
    857061 8pvk:Cz (2.55) BS02 rna ? GO:0005634 ... G0SCP3 37921038
    857062 8pvk:LA (2.55) BS01 rna ? GO:0002181 ... G0S4P8 37921038
    857063 8pvk:LB (2.55) BS01 rna ? GO:0003723 ... G0RXW1 37921038
    857064 8pvk:LC (2.55) BS01 rna ? GO:0003735 ... G0SFC3 37921038
    857065 8pvk:LC (2.55) BS02 rna ? GO:0003735 ... G0SFC3 37921038
    857066 8pvk:LD (2.55) BS01 rna ? GO:0000027 ... G0SEG2 37921038
    857067 8pvk:LD (2.55) BS02 rna ? GO:0000027 ... G0SEG2 37921038
    857068 8pvk:LE (2.55) BS01 rna ? GO:0000027 ... G0S0D6 37921038
    857069 8pvk:LF (2.55) BS01 rna ? GO:0000463 ... G0SFL0 37921038
    857070 8pvk:LG (2.55) BS01 rna ? GO:0003723 ... G0SAJ9 37921038
    857071 8pvk:LG (2.55) BS02 rna ? GO:0003723 ... G0SAJ9 37921038
    857072 8pvk:LG (2.55) BS03 rna ? GO:0003723 ... G0SAJ9 37921038
    857073 8pvk:LH (2.55) BS01 rna N/A GO:0003735 ... N/A 37921038
    857074 8pvk:LJ (2.55) BS01 rna ? GO:0003735 ... G0SHQ2 37921038
    857075 8pvk:LJ (2.55) BS02 rna ? GO:0003735 ... G0SHQ2 37921038
    857076 8pvk:LK (2.55) BS01 rna ? GO:0003735 ... G0SGH8 37921038
    857077 8pvk:LL (2.55) BS01 rna ? GO:0003723 ... G0S992 37921038
    857078 8pvk:LL (2.55) BS02 rna ? GO:0003723 ... G0S992 37921038
    857079 8pvk:LM (2.55) BS01 rna ? GO:0003723 ... G0S1R0 37921038
    857080 8pvk:LN (2.55) BS01 rna ? GO:0002181 ... G0RZ88 37921038
    857081 8pvk:LN (2.55) BS02 rna ? GO:0002181 ... G0RZ88 37921038
    857082 8pvk:LO (2.55) BS01 rna ? GO:0003729 ... G0SH61 37921038
    857083 8pvk:LP (2.55) BS01 rna ? GO:0002181 ... G0SGY1 37921038
    857084 8pvk:LP (2.55) BS02 rna ? GO:0002181 ... G0SGY1 37921038
    857085 8pvk:LQ (2.55) BS01 rna ? GO:0003723 ... G0S9B5 37921038
    857086 8pvk:LR (2.55) BS01 rna ? GO:0003735 ... G0S9T3 37921038
    857087 8pvk:LS (2.55) BS01 rna ? GO:0003735 ... G0SCE2 37921038
    857088 8pvk:LT (2.55) BS01 rna ? GO:0003735 ... G0S0Z3 37921038
    857089 8pvk:LU (2.55) BS01 rna ? GO:0002181 ... G0SDS8 37921038
    857090 8pvk:LV (2.55) BS01 rna ? GO:0003735 ... G0SI44 37921038
    857091 8pvk:LX (2.55) BS01 rna ? GO:0003735 ... G0S507 37921038
    857092 8pvk:LX (2.55) BS02 rna ? GO:0003735 ... G0S507 37921038
    857093 8pvk:LY (2.55) BS01 rna ? GO:0003723 ... G0RYN9 37921038
    857094 8pvk:LY (2.55) BS02 rna ? GO:0003723 ... G0RYN9 37921038
    857095 8pvk:LZ (2.55) BS01 rna ? GO:0003735 ... G0RZE9 37921038
    857096 8pvk:La (2.55) BS01 rna N/A GO:0003735 ... N/A 37921038
    857097 8pvk:Lc (2.55) BS01 rna ? GO:0003723 ... G0SEI0 37921038
    857098 8pvk:Ld (2.55) BS01 rna ? GO:0002181 ... G0SD68 37921038
    857099 8pvk:Le (2.55) BS01 rna ? GO:0003735 ... G0S6V4 37921038
    857100 8pvk:Lf (2.55) BS01 rna ? GO:0003735 ... G0SCL3 37921038
    857101 8pvk:Lg (2.55) BS01 rna ? GO:0003735 ... G0SFN0 37921038
    857102 8pvk:Lg (2.55) BS02 ZN ? GO:0003735 ... G0SFN0 37921038
    857103 8pvk:Lh (2.55) BS01 rna 2.4.99.18 GO:0003735 ... G0S0D7 37921038
    857104 8pvk:Lh (2.55) BS02 rna 2.4.99.18 GO:0003735 ... G0S0D7 37921038
    857105 8pvk:Li (2.55) BS01 rna ? GO:0003735 ... G0SBN1 37921038
    857106 8pvk:Lj (2.55) BS01 rna ? GO:0003723 ... G0S101 37921038
    857107 8pvk:Lj (2.55) BS02 rna ? GO:0003723 ... G0S101 37921038
    857108 8pvk:Lj (2.55) BS03 ZN ? GO:0003723 ... G0S101 37921038
    857109 8pvk:Lk (2.55) BS01 rna N/A GO:0003735 ... N/A 37921038
    857110 8pvk:Ll (2.55) BS01 rna ? GO:0003735 ... Q2H9R2 37921038
    857111 8pvk:Ll (2.55) BS02 rna ? GO:0003735 ... Q2H9R2 37921038
    857112 8pvk:Lp (2.55) BS01 rna ? GO:0003735 ... G0S6B0 37921038
    857113 8pvk:Lp (2.55) BS02 ZN ? GO:0003735 ... G0S6B0 37921038
    857114 8pvk:Lq (2.55) BS01 rna ? GO:0003735 ... G0SHJ6 37921038
    857115 8pvk:Lr (2.55) BS01 rna ? GO:0003723 ... G0S4Z9 37921038
    857116 8pvl:CF (2.19) BS01 rna ? GO:0000027 ... G0S616 37921038
    857117 8pvl:CH (2.19) BS01 rna ? GO:0005525 ... G0S8F1 37921038
    857118 8pvl:CH (2.19) BS02 rna ? GO:0005525 ... G0S8F1 37921038
    857119 8pvl:CH (2.19) BS03 GTP ? GO:0005525 ... G0S8F1 37921038
    857120 8pvl:CH (2.19) BS04 MG ? GO:0005525 ... G0S8F1 37921038
    857121 8pvl:CJ (2.19) BS01 rna ? GO:0000463 ... G0SHX6 37921038
    857122 8pvl:CJ (2.19) BS02 rna ? GO:0000463 ... G0SHX6 37921038
    857123 8pvl:CK (2.19) BS01 rna ? GO:0005634 ... G0S081 37921038
    857124 8pvl:CL (2.19) BS01 rna ? GO:0005525 ... G0SEW3 37921038
    857125 8pvl:CM (2.19) BS01 rna ? GO:0000463 ... G0SFL0 37921038
    857126 8pvl:CM (2.19) BS02 rna ? GO:0000463 ... G0SFL0 37921038
    857127 8pvl:CN (2.19) BS01 rna ? GO:0000054 ... G0S683 37921038
    857128 8pvl:CO (2.19) BS01 rna ? GO:0030687 ... G0SHK0 37921038
    857129 8pvl:CQ (2.19) BS01 rna ? GO:0003735 ... G0S497 37921038
    857130 8pvl:CQ (2.19) BS02 ZN ? GO:0003735 ... G0S497 37921038
    857131 8pvl:Cb (2.19) BS01 rna ? GO:0003676 ... G0SB32 37921038
    857132 8pvl:Cb (2.19) BS02 ZN ? GO:0003676 ... G0SB32 37921038
    857133 8pvl:Cd (2.19) BS01 rna ? GO:0005525 ... G0SBX1 37921038
    857134 8pvl:Cd (2.19) BS02 MG ? GO:0005525 ... G0SBX1 37921038
    857135 8pvl:Cd (2.19) BS03 MG ? GO:0005525 ... G0SBX1 37921038
    857136 8pvl:Cd (2.19) BS04 GTP ? GO:0005525 ... G0SBX1 37921038
    857137 8pvl:Ce (2.19) BS01 rna ? GO:0000027 ... G0S495 37921038
    857138 8pvl:Ce (2.19) BS02 rna ? GO:0000027 ... G0S495 37921038
    857139 8pvl:Cf (2.19) BS01 rna ? GO:0000027 ... G0SF80 37921038
    857140 8pvl:Cf (2.19) BS02 rna ? GO:0000027 ... G0SF80 37921038
    857141 8pvl:Cg (2.19) BS01 rna ? GO:0005634 ... G0SCH6 37921038
    857142 8pvl:Cz (2.19) BS01 rna ? GO:0005634 ... G0SCP3 37921038
    857143 8pvl:Cz (2.19) BS02 rna ? GO:0005634 ... G0SCP3 37921038
    857144 8pvl:LA (2.19) BS01 rna ? GO:0002181 ... G0S4P8 37921038
    857145 8pvl:LB (2.19) BS01 rna ? GO:0003723 ... G0RXW1 37921038
    857146 8pvl:LC (2.19) BS01 rna ? GO:0003735 ... G0SFC3 37921038
    857147 8pvl:LC (2.19) BS02 rna ? GO:0003735 ... G0SFC3 37921038
    857148 8pvl:LD (2.19) BS01 rna ? GO:0000027 ... G0SEG2 37921038
    857149 8pvl:LD (2.19) BS02 rna ? GO:0000027 ... G0SEG2 37921038
    857150 8pvl:LE (2.19) BS01 rna ? GO:0000027 ... G0S0D6 37921038
    857151 8pvl:LF (2.19) BS01 rna ? GO:0000463 ... G0SFL0 37921038
    857152 8pvl:LG (2.19) BS01 rna ? GO:0003723 ... G0SAJ9 37921038
    857153 8pvl:LG (2.19) BS02 rna ? GO:0003723 ... G0SAJ9 37921038
    857154 8pvl:LG (2.19) BS03 rna ? GO:0003723 ... G0SAJ9 37921038
    857155 8pvl:LH (2.19) BS01 rna N/A GO:0003735 ... N/A 37921038
    857156 8pvl:LJ (2.19) BS01 rna ? GO:0003735 ... G0SHQ2 37921038
    857157 8pvl:LJ (2.19) BS02 rna ? GO:0003735 ... G0SHQ2 37921038
    857158 8pvl:LK (2.19) BS01 rna ? GO:0003735 ... G0SGH8 37921038
    857159 8pvl:LL (2.19) BS01 rna ? GO:0003723 ... G0S992 37921038
    857160 8pvl:LL (2.19) BS02 rna ? GO:0003723 ... G0S992 37921038
    857161 8pvl:LM (2.19) BS01 rna ? GO:0003723 ... G0S1R0 37921038
    857162 8pvl:LN (2.19) BS01 rna ? GO:0002181 ... G0RZ88 37921038
    857163 8pvl:LN (2.19) BS02 rna ? GO:0002181 ... G0RZ88 37921038
    857164 8pvl:LO (2.19) BS01 rna ? GO:0003729 ... G0SH61 37921038
    857165 8pvl:LP (2.19) BS01 rna ? GO:0002181 ... G0SGY1 37921038
    857166 8pvl:LP (2.19) BS02 rna ? GO:0002181 ... G0SGY1 37921038
    857167 8pvl:LQ (2.19) BS01 rna ? GO:0003723 ... G0S9B5 37921038
    857168 8pvl:LR (2.19) BS01 rna ? GO:0003735 ... G0S9T3 37921038
    857169 8pvl:LS (2.19) BS01 rna ? GO:0003735 ... G0SCE2 37921038
    857170 8pvl:LT (2.19) BS01 rna ? GO:0003735 ... G0S0Z3 37921038
    857171 8pvl:LU (2.19) BS01 rna ? GO:0002181 ... G0SDS8 37921038
    857172 8pvl:LV (2.19) BS01 rna ? GO:0003735 ... G0SI44 37921038
    857173 8pvl:LX (2.19) BS01 rna ? GO:0003735 ... G0S507 37921038
    857174 8pvl:LX (2.19) BS02 rna ? GO:0003735 ... G0S507 37921038
    857175 8pvl:LY (2.19) BS01 rna ? GO:0003723 ... G0RYN9 37921038
    857176 8pvl:LY (2.19) BS02 rna ? GO:0003723 ... G0RYN9 37921038
    857177 8pvl:LZ (2.19) BS01 rna ? GO:0003735 ... G0RZE9 37921038
    857178 8pvl:La (2.19) BS01 rna N/A GO:0003735 ... N/A 37921038
    857179 8pvl:Lc (2.19) BS01 rna ? GO:0003723 ... G0SEI0 37921038
    857180 8pvl:Ld (2.19) BS01 rna ? GO:0002181 ... G0SD68 37921038
    857181 8pvl:Le (2.19) BS01 rna ? GO:0003735 ... G0S6V4 37921038
    857182 8pvl:Lf (2.19) BS01 rna ? GO:0003735 ... G0SCL3 37921038
    857183 8pvl:Lg (2.19) BS01 rna ? GO:0003735 ... G0SFN0 37921038
    857184 8pvl:Lg (2.19) BS02 ZN ? GO:0003735 ... G0SFN0 37921038
    857185 8pvl:Lh (2.19) BS01 rna 2.4.99.18 GO:0003735 ... G0S0D7 37921038
    857186 8pvl:Lh (2.19) BS02 rna 2.4.99.18 GO:0003735 ... G0S0D7 37921038
    857187 8pvl:Li (2.19) BS01 rna ? GO:0003735 ... G0SBN1 37921038
    857188 8pvl:Lj (2.19) BS01 rna ? GO:0003723 ... G0S101 37921038
    857189 8pvl:Lj (2.19) BS02 rna ? GO:0003723 ... G0S101 37921038
    857190 8pvl:Lj (2.19) BS03 ZN ? GO:0003723 ... G0S101 37921038
    857191 8pvl:Lk (2.19) BS01 rna N/A GO:0003735 ... N/A 37921038
    857192 8pvl:Ll (2.19) BS01 rna ? GO:0003735 ... Q2H9R2 37921038
    857193 8pvl:Ll (2.19) BS02 rna ? GO:0003735 ... Q2H9R2 37921038
    857194 8pvl:Lp (2.19) BS01 rna ? GO:0003735 ... G0S6B0 37921038
    857195 8pvl:Lp (2.19) BS02 ZN ? GO:0003735 ... G0S6B0 37921038
    857196 8pvl:Lq (2.19) BS01 rna ? GO:0003735 ... G0SHJ6 37921038
    857197 8pvm:A (1.38) BS01 402 1.12.7.2 GO:0005506 ... P29166 37983562
    857198 8pvm:A (1.38) BS02 SF4 1.12.7.2 GO:0005506 ... P29166 37983562
    857199 8pvm:A (1.38) BS03 SF4 1.12.7.2 GO:0005506 ... P29166 37983562
    857200 8pvm:A (1.38) BS04 SF4 1.12.7.2 GO:0005506 ... P29166 37983562

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).