SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    858601 8q54:e (2.39) BS02 COM N/A GO:0005737 ... P80186 N/A
    858602 8q54:e (2.39) BS03 JCV N/A GO:0005737 ... P80186 N/A
    858603 8q54:e (2.39) BS04 JCV N/A GO:0005737 ... P80186 N/A
    858604 8q54:e (2.39) BS05 JCV N/A GO:0005737 ... P80186 N/A
    858605 8q54:f (2.39) BS01 JCV N/A GO:0005886 ... Q50773 N/A
    858606 8q54:g (2.39) BS01 JCV N/A GO:0005886 ... Q50774 N/A
    858607 8q55:A (1.3) BS01 peptide N/A N/A P31947 N/A
    858608 8q55:A (1.3) BS02 JOL N/A N/A P31947 N/A
    858609 8q56:A (3.5) BS01 SAM N/A GO:0003676 ... A0A6C7IK61 39174540
    858610 8q57:A (1.7) BS01 ZN 4.1.2.40 GO:0005975 ... A0A0T9TPS2 37838169
    858611 8q57:A (1.7) BS02 ZN 4.1.2.40 GO:0005975 ... A0A0T9TPS2 37838169
    858612 8q57:B (1.7) BS01 ZN 4.1.2.40 GO:0005975 ... A0A0T9TPS2 37838169
    858613 8q57:B (1.7) BS02 ZN 4.1.2.40 GO:0005975 ... A0A0T9TPS2 37838169
    858614 8q58:A (1.7) BS01 ZN ? GO:0005975 ... A0A2A2MA06 37838169
    858615 8q58:A (1.7) BS02 ZN ? GO:0005975 ... A0A2A2MA06 37838169
    858616 8q59:A (2.0) BS01 ZN 4.1.2.40 GO:0005975 ... A0A0T9TPS2 37838169
    858617 8q59:A (2.0) BS02 JP9 4.1.2.40 GO:0005975 ... A0A0T9TPS2 37838169
    858618 8q59:B (2.0) BS01 ZN 4.1.2.40 GO:0005975 ... A0A0T9TPS2 37838169
    858619 8q59:B (2.0) BS02 JP9 4.1.2.40 GO:0005975 ... A0A0T9TPS2 37838169
    858620 8q5a:A (2.8) BS01 ZN ? GO:0005975 ... A0A2A2MA06 37838169
    858621 8q5a:A (2.8) BS02 ZN ? GO:0005975 ... A0A2A2MA06 37838169
    858622 8q5c:A (2.0) BS01 peptide N/A N/A P31947 N/A
    858623 8q5c:A (2.0) BS02 W5T N/A N/A P31947 N/A
    858624 8q5e:A (2.4) BS01 FMN ? GO:0000166 ... Q88E39 38048072
    858625 8q5e:B (2.4) BS01 FMN ? GO:0000166 ... Q88E39 38048072
    858626 8q5f:A (2.0) BS01 FMN N/A N/A N/A 38048072
    858627 8q5f:B (2.0) BS01 FMN N/A N/A N/A 38048072
    858628 8q5g:A (2.0) BS01 FMN ? GO:0000166 ... A0A6H0WK49 38048072
    858629 8q5g:A (2.0) BS02 FMN ? GO:0000166 ... A0A6H0WK49 38048072
    858630 8q5g:B (2.0) BS01 FMN ? GO:0000166 ... A0A6H0WK49 38048072
    858631 8q5g:B (2.0) BS02 FMN ? GO:0000166 ... A0A6H0WK49 38048072
    858632 8q5i:0 (2.45) BS01 rna ? GO:0003735 ... A0A8H6BZJ3 N/A
    858633 8q5i:0 (2.45) BS02 rna ? GO:0003735 ... A0A8H6BZJ3 N/A
    858634 8q5i:2 (2.45) BS01 rna ? GO:0003735 ... A0A8H6F1C8 N/A
    858635 8q5i:2 (2.45) BS02 rna ? GO:0003735 ... A0A8H6F1C8 N/A
    858636 8q5i:5 (2.45) BS01 rna ? GO:0002181 ... A0A1D8PM41 N/A
    858637 8q5i:6 (2.45) BS01 rna ? GO:0003735 ... A0A8H6C444 N/A
    858638 8q5i:7 (2.45) BS01 rna ? GO:0002181 ... A0A8H6C4U1 N/A
    858639 8q5i:8 (2.45) BS01 rna ? GO:0003735 ... A0A8H6F6A1 N/A
    858640 8q5i:8 (2.45) BS02 rna ? GO:0003735 ... A0A8H6F6A1 N/A
    858641 8q5i:9 (2.45) BS01 rna ? GO:0003723 ... A0A8H6F3X2 N/A
    858642 8q5i:9 (2.45) BS02 rna ? GO:0003723 ... A0A8H6F3X2 N/A
    858643 8q5i:AA (2.45) BS01 rna ? GO:0003735 ... Q9P843 N/A
    858644 8q5i:AB (2.45) BS01 rna ? GO:0003723 ... A0A8H6BVY8 N/A
    858645 8q5i:AC (2.45) BS01 rna ? GO:0002181 ... A0A8H6F0G8 N/A
    858646 8q5i:AD (2.45) BS01 rna ? GO:0003723 ... A0A1D8PM75 N/A
    858647 8q5i:AE (2.45) BS01 rna ? GO:0002181 ... A0A8H6F1M1 N/A
    858648 8q5i:AF (2.45) BS01 rna ? GO:0003735 ... O94008 N/A
    858649 8q5i:AG (2.45) BS01 rna ? GO:0003735 ... A0A8H6BW57 N/A
    858650 8q5i:AH (2.45) BS01 rna ? GO:0003735 ... A0A8H6F171 N/A
    858651 8q5i:AH (2.45) BS02 MG ? GO:0003735 ... A0A8H6F171 N/A
    858652 8q5i:AI (2.45) BS01 rna ? GO:0000463 ... A0A8H6F6B7 N/A
    858653 8q5i:AI (2.45) BS02 rna ? GO:0000463 ... A0A8H6F6B7 N/A
    858654 8q5i:AJ (2.45) BS01 rna ? GO:0003735 ... P47834 N/A
    858655 8q5i:AK (2.45) BS01 rna ? GO:0003723 ... A0A1D8PF45 N/A
    858656 8q5i:AK (2.45) BS02 rna ? GO:0003723 ... A0A1D8PF45 N/A
    858657 8q5i:AK (2.45) BS03 K16 ? GO:0003723 ... A0A1D8PF45 N/A
    858658 8q5i:AK (2.45) BS04 ZN ? GO:0003723 ... A0A1D8PF45 N/A
    858659 8q5i:AL (2.45) BS01 rna ? GO:0003735 ... A0A1D8PG16 N/A
    858660 8q5i:AM (2.45) BS01 rna ? GO:0003735 ... Q96W55 N/A
    858661 8q5i:AM (2.45) BS02 rna ? GO:0003735 ... Q96W55 N/A
    858662 8q5i:AN (2.45) BS01 rna ? GO:0003735 ... A0A1D8PL68 N/A
    858663 8q5i:AN (2.45) BS02 ZN ? GO:0003735 ... A0A1D8PL68 N/A
    858664 8q5i:AP (2.45) BS01 rna ? GO:0003735 ... A0A8H6BR69 N/A
    858665 8q5i:AP (2.45) BS02 rna ? GO:0003735 ... A0A8H6BR69 N/A
    858666 8q5i:AP (2.45) BS03 ZN ? GO:0003735 ... A0A8H6BR69 N/A
    858667 8q5i:AP (2.45) BS04 MG ? GO:0003735 ... A0A8H6BR69 N/A
    858668 8q5i:AQ (2.45) BS01 rna ? GO:0003735 ... A0A1D8PP14 N/A
    858669 8q5i:AQ (2.45) BS02 ZN ? GO:0003735 ... A0A1D8PP14 N/A
    858670 8q5i:B (2.45) BS01 rna ? GO:0000028 ... A0A8H6C395 N/A
    858671 8q5i:C (2.45) BS01 rna ? GO:0003735 ... A0A8H6C387 N/A
    858672 8q5i:C (2.45) BS02 rna ? GO:0003735 ... A0A8H6C387 N/A
    858673 8q5i:D (2.45) BS01 rna ? GO:0000054 ... A0A8H6BZ90 N/A
    858674 8q5i:E (2.45) BS01 rna ? GO:0000054 ... A0A8H6BYS1 N/A
    858675 8q5i:F (2.45) BS01 rna ? GO:0003723 ... A0A1D8PCI6 N/A
    858676 8q5i:G (2.45) BS01 rna ? GO:0000054 ... A0A8H6BS29 N/A
    858677 8q5i:H (2.45) BS01 rna ? GO:0003735 ... A0A8H6BZ37 N/A
    858678 8q5i:I (2.45) BS01 rna ? GO:0003735 ... A0A8H6C655 N/A
    858679 8q5i:J (2.45) BS01 rna ? GO:0003735 ... A0A8H6F0S0 N/A
    858680 8q5i:J (2.45) BS02 rna ? GO:0003735 ... A0A8H6F0S0 N/A
    858681 8q5i:K (2.45) BS01 rna ? GO:0003723 ... A0A8H6F1X2 N/A
    858682 8q5i:L (2.45) BS01 rna ? GO:0003723 ... A0A8H6BWQ8 N/A
    858683 8q5i:M (2.45) BS01 rna ? GO:0003735 ... A0A1D8PN83 N/A
    858684 8q5i:M (2.45) BS02 MG ? GO:0003735 ... A0A1D8PN83 N/A
    858685 8q5i:O (2.45) BS01 rna ? GO:0003735 ... A0A8H6F4G0 N/A
    858686 8q5i:P (2.45) BS01 rna ? GO:0003735 ... A0A8H6F0V4 N/A
    858687 8q5i:Q (2.45) BS01 rna ? GO:0000028 ... A0A1D8PK22 N/A
    858688 8q5i:R (2.45) BS01 rna ? GO:0000462 ... O94017 N/A
    858689 8q5i:S (2.45) BS01 rna ? GO:0003735 ... A0A8H6BTR7 N/A
    858690 8q5i:T (2.45) BS01 rna ? GO:0003676 ... A0A8H6F3Y8 N/A
    858691 8q5i:U (2.45) BS01 rna ? GO:0000028 ... A0A8H6C5L4 N/A
    858692 8q5i:V (2.45) BS01 rna ? GO:0003723 ... A0A8H6BYJ9 N/A
    858693 8q5i:W (2.45) BS01 rna ? GO:0003735 ... Q9P844 N/A
    858694 8q5i:X (2.45) BS01 rna ? GO:0003735 ... A0A8H6F0N4 N/A
    858695 8q5i:X (2.45) BS02 MG ? GO:0003735 ... A0A8H6F0N4 N/A
    858696 8q5i:Y (2.45) BS01 rna ? GO:0003735 ... A0A8H6F0V0 N/A
    858697 8q5i:Z (2.45) BS01 rna ? GO:0003735 ... A0A8H6C3K1 N/A
    858698 8q5i:b (2.45) BS01 rna ? GO:0003729 ... A0A8H6BTS1 N/A
    858699 8q5i:c (2.45) BS01 rna ? GO:0003735 ... A0A8H6BWE6 N/A
    858700 8q5i:d (2.45) BS01 rna ? GO:0000028 ... A0A8H6C0A5 N/A
    858701 8q5i:e (2.45) BS01 rna ? GO:0002181 ... A0A1D8PTR4 N/A
    858702 8q5i:e (2.45) BS02 ZN ? GO:0002181 ... A0A1D8PTR4 N/A
    858703 8q5i:f (2.45) BS01 rna ? GO:0003735 ... A0A1D8PSK2 N/A
    858704 8q5i:j (2.45) BS01 rna ? GO:0002181 ... A0A8H6F1X9 N/A
    858705 8q5i:j (2.45) BS02 rna ? GO:0002181 ... A0A8H6F1X9 N/A
    858706 8q5i:j (2.45) BS03 MG ? GO:0002181 ... A0A8H6F1X9 N/A
    858707 8q5i:k (2.45) BS01 rna ? GO:0000027 ... Q59LS1 N/A
    858708 8q5i:l (2.45) BS01 rna ? GO:0003735 ... A0A8H6F4H4 N/A
    858709 8q5i:l (2.45) BS02 rna ? GO:0003735 ... A0A8H6F4H4 N/A
    858710 8q5i:m (2.45) BS01 rna ? GO:0000027 ... Q5AGZ7 N/A
    858711 8q5i:m (2.45) BS02 rna ? GO:0000027 ... Q5AGZ7 N/A
    858712 8q5i:n (2.45) BS01 rna ? GO:0000027 ... Q9P834 N/A
    858713 8q5i:o (2.45) BS01 rna ? GO:0000463 ... A0A8H6BVN2 N/A
    858714 8q5i:o (2.45) BS02 rna ? GO:0000463 ... A0A8H6BVN2 N/A
    858715 8q5i:p (2.45) BS01 rna ? GO:0003723 ... A0A8H6C337 N/A
    858716 8q5i:p (2.45) BS02 rna ? GO:0003723 ... A0A8H6C337 N/A
    858717 8q5i:q (2.45) BS01 rna ? GO:0002181 ... A0A8H6C3N3 N/A
    858718 8q5i:r (2.45) BS01 rna ? GO:0003735 ... Q5AIB8 N/A
    858719 8q5i:r (2.45) BS02 rna ? GO:0003735 ... Q5AIB8 N/A
    858720 8q5i:s (2.45) BS01 rna ? GO:0003735 ... A0A8H6F1S5 N/A
    858721 8q5i:s (2.45) BS02 rna ? GO:0003735 ... A0A8H6F1S5 N/A
    858722 8q5i:t (2.45) BS01 rna ? GO:0003723 ... A0A8H6F5V7 N/A
    858723 8q5i:t (2.45) BS02 rna ? GO:0003723 ... A0A8H6F5V7 N/A
    858724 8q5i:u (2.45) BS01 rna ? GO:0003723 ... A0A8H6F332 N/A
    858725 8q5i:v (2.45) BS01 rna ? GO:0002181 ... Q5A6R1 N/A
    858726 8q5i:v (2.45) BS02 rna ? GO:0002181 ... Q5A6R1 N/A
    858727 8q5i:w (2.45) BS01 rna ? GO:0003729 ... A0A8H6BZ56 N/A
    858728 8q5i:x (2.45) BS01 rna ? GO:0002181 ... A0A8H6BUG0 N/A
    858729 8q5i:x (2.45) BS02 rna ? GO:0002181 ... A0A8H6BUG0 N/A
    858730 8q5i:x (2.45) BS03 MG ? GO:0002181 ... A0A8H6BUG0 N/A
    858731 8q5i:y (2.45) BS01 rna ? GO:0003723 ... A0A8H6C4Y1 N/A
    858732 8q5i:z (2.45) BS01 rna ? GO:0003723 ... A0A1D8PK40 N/A
    858733 8q5i:z (2.45) BS02 rna ? GO:0003723 ... A0A1D8PK40 N/A
    858734 8q5j:A (1.48) BS01 HEM ? GO:0004497 ... A0A100JTL7 N/A
    858735 8q5k:A (2.8) BS01 JTI ? N/A Q9I4X0 38170170
    858736 8q5l:A (2.9) BS01 JVO ? N/A Q9I4X0 38170170
    858737 8q5n:A (2.65) BS01 CA N/A GO:0046872 ... I4EG67 39041409
    858738 8q5n:B (2.65) BS01 CA N/A GO:0046872 ... I4EG67 39041409
    858739 8q5o:A (2.33) BS01 dna N/A N/A A0A0L6ZWS4 39041409
    858740 8q5o:A (2.33) BS02 dna N/A N/A A0A0L6ZWS4 39041409
    858741 8q5o:A (2.33) BS03 CA N/A N/A A0A0L6ZWS4 39041409
    858742 8q5o:B (2.33) BS01 dna N/A N/A A0A0L6ZWS4 39041409
    858743 8q5o:B (2.33) BS02 dna N/A N/A A0A0L6ZWS4 39041409
    858744 8q5o:B (2.33) BS03 CA N/A N/A A0A0L6ZWS4 39041409
    858745 8q5p:A (1.814) BS01 peptide 2.1.1.-
    2.1.1.359
    GO:0005634 ... Q9BYW2 38160530
    858746 8q5p:A (1.814) BS02 ZN 2.1.1.-
    2.1.1.359
    GO:0005634 ... Q9BYW2 38160530
    858747 8q5p:A (1.814) BS03 ZN 2.1.1.-
    2.1.1.359
    GO:0005634 ... Q9BYW2 38160530
    858748 8q5p:A (1.814) BS04 ZN 2.1.1.-
    2.1.1.359
    GO:0005634 ... Q9BYW2 38160530
    858749 8q5p:A (1.814) BS05 SAM 2.1.1.-
    2.1.1.359
    GO:0005634 ... Q9BYW2 38160530
    858750 8q5s:A (1.49) BS01 peptide N/A GO:0005506 ... Q9GZT9 N/A
    858751 8q5t:A (2.31) BS01 SF4 1.18.6.1 GO:0005524 ... P25767 38696373
    858752 8q5t:B (2.31) BS01 SF4 1.18.6.1 GO:0005524 ... P25767 38696373
    858753 8q5t:C (2.31) BS01 SF4 1.18.6.1 GO:0005524 ... P25767 38696373
    858754 8q5t:D (2.31) BS01 SF4 1.18.6.1 GO:0005524 ... P25767 38696373
    858755 8q5u:D (3.0) BS01 BMA N/A GO:0005509 ... T1WGN1 38569940
    858756 8q5u:D (3.0) BS02 MAN N/A GO:0005509 ... T1WGN1 38569940
    858757 8q5u:D (3.0) BS03 FUC N/A GO:0005509 ... T1WGN1 38569940
    858758 8q5u:D (3.0) BS04 CA N/A GO:0005509 ... T1WGN1 38569940
    858759 8q5u:E (3.0) BS01 CA N/A GO:0005509 ... T1WGN1 38569940
    858760 8q5u:F (3.0) BS01 BMA N/A GO:0005509 ... T1WGN1 38569940
    858761 8q5u:F (3.0) BS02 MAN N/A GO:0005509 ... T1WGN1 38569940
    858762 8q5u:F (3.0) BS03 FUC N/A GO:0005509 ... T1WGN1 38569940
    858763 8q5u:F (3.0) BS04 CA N/A GO:0005509 ... T1WGN1 38569940
    858764 8q5v:A (2.74) BS01 ADP 1.18.6.1 GO:0005524 ... P25767 38696373
    858765 8q5v:A (2.74) BS02 SF4 1.18.6.1 GO:0005524 ... P25767 38696373
    858766 8q5v:B (2.74) BS01 SF4 1.18.6.1 GO:0005524 ... P25767 38696373
    858767 8q5v:B (2.74) BS02 ADP 1.18.6.1 GO:0005524 ... P25767 38696373
    858768 8q5v:B (2.74) BS03 MG 1.18.6.1 GO:0005524 ... P25767 38696373
    858769 8q5v:C (2.74) BS01 ADP 1.18.6.1 GO:0005524 ... P25767 38696373
    858770 8q5v:C (2.74) BS02 MG 1.18.6.1 GO:0005524 ... P25767 38696373
    858771 8q5v:C (2.74) BS03 SF4 1.18.6.1 GO:0005524 ... P25767 38696373
    858772 8q5v:D (2.74) BS01 SF4 1.18.6.1 GO:0005524 ... P25767 38696373
    858773 8q5v:D (2.74) BS02 ADP 1.18.6.1 GO:0005524 ... P25767 38696373
    858774 8q5v:E (2.74) BS01 ADP 1.18.6.1 GO:0005524 ... P25767 38696373
    858775 8q5v:E (2.74) BS02 MG 1.18.6.1 GO:0005524 ... P25767 38696373
    858776 8q5v:E (2.74) BS03 SF4 1.18.6.1 GO:0005524 ... P25767 38696373
    858777 8q5v:F (2.74) BS01 SF4 1.18.6.1 GO:0005524 ... P25767 38696373
    858778 8q5v:F (2.74) BS02 ADP 1.18.6.1 GO:0005524 ... P25767 38696373
    858779 8q5v:F (2.74) BS03 MG 1.18.6.1 GO:0005524 ... P25767 38696373
    858780 8q5v:G (2.74) BS01 ADP 1.18.6.1 GO:0005524 ... P25767 38696373
    858781 8q5v:G (2.74) BS02 SF4 1.18.6.1 GO:0005524 ... P25767 38696373
    858782 8q5v:H (2.74) BS01 SF4 1.18.6.1 GO:0005524 ... P25767 38696373
    858783 8q5v:H (2.74) BS02 ADP 1.18.6.1 GO:0005524 ... P25767 38696373
    858784 8q5v:H (2.74) BS03 MG 1.18.6.1 GO:0005524 ... P25767 38696373
    858785 8q5v:J (2.74) BS01 ADP 1.18.6.1 GO:0005524 ... P25767 38696373
    858786 8q5v:J (2.74) BS02 SF4 1.18.6.1 GO:0005524 ... P25767 38696373
    858787 8q5v:J (2.74) BS03 MG 1.18.6.1 GO:0005524 ... P25767 38696373
    858788 8q5v:K (2.74) BS01 SF4 1.18.6.1 GO:0005524 ... P25767 38696373
    858789 8q5v:K (2.74) BS02 ADP 1.18.6.1 GO:0005524 ... P25767 38696373
    858790 8q5v:K (2.74) BS03 MG 1.18.6.1 GO:0005524 ... P25767 38696373
    858791 8q5v:L (2.74) BS01 ADP 1.18.6.1 GO:0005524 ... P25767 38696373
    858792 8q5v:L (2.74) BS02 SF4 1.18.6.1 GO:0005524 ... P25767 38696373
    858793 8q5v:M (2.74) BS01 SF4 1.18.6.1 GO:0005524 ... P25767 38696373
    858794 8q5v:M (2.74) BS02 ADP 1.18.6.1 GO:0005524 ... P25767 38696373
    858795 8q5v:M (2.74) BS03 MG 1.18.6.1 GO:0005524 ... P25767 38696373
    858796 8q5w:A (2.49) BS01 ADP 1.18.6.1 GO:0005524 ... D5VUA1 38696373
    858797 8q5w:A (2.49) BS02 SF4 1.18.6.1 GO:0005524 ... D5VUA1 38696373
    858798 8q5w:B (2.49) BS01 SF4 1.18.6.1 GO:0005524 ... D5VUA1 38696373
    858799 8q5w:B (2.49) BS02 ADP 1.18.6.1 GO:0005524 ... D5VUA1 38696373
    858800 8q5w:C (2.49) BS01 SF4 1.18.6.1 GO:0005524 ... D5VUA1 38696373

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).