SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    859001 8pj2:z (3.4) BS01 rna N/A GO:0001732 ... P55010 39289545
    859002 8pj2:z (3.4) BS02 rna N/A GO:0001732 ... P55010 39289545
    859003 8pj3:0 (3.7) BS01 rna N/A GO:0000049 ... O60841 39289545
    859004 8pj3:0 (3.7) BS02 rna N/A GO:0000049 ... O60841 39289545
    859005 8pj3:0 (3.7) BS03 GTP N/A GO:0000049 ... O60841 39289545
    859006 8pj3:0 (3.7) BS04 MG N/A GO:0000049 ... O60841 39289545
    859007 8pj3:1 (3.7) BS01 rna N/A GO:0001732 ... P55884 39289545
    859008 8pj3:B (3.7) BS01 rna N/A GO:0002181 ... P62280 39289545
    859009 8pj3:C (3.7) BS01 rna N/A GO:0002181 ... P62701 39289545
    859010 8pj3:D (3.7) BS01 rna N/A GO:0002181 ... P46781 39289545
    859011 8pj3:E (3.7) BS01 rna N/A GO:0002181 ... P62266 39289545
    859012 8pj3:F (3.7) BS01 rna N/A GO:0002181 ... P62861 39289545
    859013 8pj3:F (3.7) BS02 rna N/A GO:0002181 ... P62861 39289545
    859014 8pj3:G (3.7) BS01 rna N/A GO:0002181 ... P62081 39289545
    859015 8pj3:H (3.7) BS01 rna N/A GO:0002181 ... P42677 39289545
    859016 8pj3:I (3.7) BS01 rna N/A GO:0000462 ... P62277 39289545
    859017 8pj3:J (3.7) BS01 rna N/A GO:0002181 ... P62244 39289545
    859018 8pj3:L (3.7) BS01 rna N/A GO:0002181 ... P15880 39289545
    859019 8pj3:L (3.7) BS02 rna N/A GO:0002181 ... P15880 39289545
    859020 8pj3:M (3.7) BS01 rna N/A GO:0002181 ... P08708 39289545
    859021 8pj3:N (3.7) BS01 rna N/A GO:0000028 ... P08865 39289545
    859022 8pj3:O (3.7) BS01 rna N/A GO:0002181 ... P61247 39289545
    859023 8pj3:P (3.7) BS01 rna N/A GO:0000028 ... P62263 39289545
    859024 8pj3:Q (3.7) BS01 rna N/A GO:0002181 ... P62854 39289545
    859025 8pj3:Q (3.7) BS02 rna N/A GO:0002181 ... P62854 39289545
    859026 8pj3:Q (3.7) BS03 ZN N/A GO:0002181 ... P62854 39289545
    859027 8pj3:R (3.7) BS01 rna N/A GO:0002181 ... P62241 39289545
    859028 8pj3:S (3.7) BS01 rna N/A GO:0002181 ... P62753 39289545
    859029 8pj3:T (3.7) BS01 rna N/A GO:0002181 ... P62847 39289545
    859030 8pj3:V (3.7) BS01 rna N/A GO:0002181 ... P46782 39289545
    859031 8pj3:Y (3.7) BS01 rna N/A GO:0000462 ... P62249 39289545
    859032 8pj3:Z (3.7) BS01 rna N/A GO:0001228 ... P23396 39289545
    859033 8pj3:Z (3.7) BS02 rna N/A GO:0001228 ... P23396 39289545
    859034 8pj3:a (3.7) BS01 rna N/A GO:0002181 ... P46783 39289545
    859035 8pj3:b (3.7) BS01 rna N/A GO:0000056 ... P62841 39289545
    859036 8pj3:b (3.7) BS02 rna N/A GO:0000056 ... P62841 39289545
    859037 8pj3:b (3.7) BS03 rna N/A GO:0000056 ... P62841 39289545
    859038 8pj3:c (3.7) BS01 rna N/A GO:0001891 ... P63244 39289545
    859039 8pj3:d (3.7) BS01 rna N/A GO:0000028 ... P39019 39289545
    859040 8pj3:e (3.7) BS01 rna N/A GO:0002181 ... P62851 39289545
    859041 8pj3:f (3.7) BS01 rna N/A GO:0002181 ... P62269 39289545
    859042 8pj3:f (3.7) BS02 rna N/A GO:0002181 ... P62269 39289545
    859043 8pj3:f (3.7) BS03 MG N/A GO:0002181 ... P62269 39289545
    859044 8pj3:h (3.7) BS01 rna N/A GO:0002181 ... P60866 39289545
    859045 8pj3:i (3.7) BS01 rna N/A GO:0002181 ... P62273 39289545
    859046 8pj3:k (3.7) BS01 rna N/A GO:0002181 ... P62979 39289545
    859047 8pj3:k (3.7) BS02 ZN N/A GO:0002181 ... P62979 39289545
    859048 8pj3:m (3.7) BS01 rna N/A GO:0002181 ... P25398 39289545
    859049 8pj3:n (3.7) BS01 rna N/A GO:0000028 ... P62857 39289545
    859050 8pj3:n (3.7) BS02 rna N/A GO:0000028 ... P62857 39289545
    859051 8pj3:o (3.7) BS01 rna N/A GO:0001732 ... O75821 39289545
    859052 8pj3:q (3.7) BS01 rna N/A GO:0003723 ... P47813 39289545
    859053 8pj3:q (3.7) BS02 rna N/A GO:0003723 ... P47813 39289545
    859054 8pj3:q (3.7) BS03 rna N/A GO:0003723 ... P47813 39289545
    859055 8pj3:r (3.7) BS01 rna N/A GO:0000423 ... P05198 39289545
    859056 8pj3:r (3.7) BS02 rna N/A GO:0000423 ... P05198 39289545
    859057 8pj3:u (3.7) BS01 rna N/A GO:0001732 ... Q14152 39289545
    859058 8pj3:x (3.7) BS01 rna N/A GO:0001732 ... O15371 39289545
    859059 8pj3:x (3.7) BS02 rna N/A GO:0001732 ... O15371 39289545
    859060 8pj3:y (3.7) BS01 rna N/A GO:0001732 ... Q99613 39289545
    859061 8pj3:y (3.7) BS02 rna N/A GO:0001732 ... Q99613 39289545
    859062 8pj3:z (3.7) BS01 rna N/A GO:0001732 ... P55010 39289545
    859063 8pj3:z (3.7) BS02 rna N/A GO:0001732 ... P55010 39289545
    859064 8pj4:0 (3.2) BS01 rna N/A GO:0000049 ... O60841 39289545
    859065 8pj4:0 (3.2) BS02 rna N/A GO:0000049 ... O60841 39289545
    859066 8pj4:0 (3.2) BS03 GTP N/A GO:0000049 ... O60841 39289545
    859067 8pj4:0 (3.2) BS04 MG N/A GO:0000049 ... O60841 39289545
    859068 8pj4:B (3.2) BS01 rna N/A GO:0002181 ... P62280 39289545
    859069 8pj4:C (3.2) BS01 rna N/A GO:0002181 ... P62701 39289545
    859070 8pj4:D (3.2) BS01 rna N/A GO:0002181 ... P46781 39289545
    859071 8pj4:E (3.2) BS01 rna N/A GO:0002181 ... P62266 39289545
    859072 8pj4:F (3.2) BS01 rna N/A GO:0002181 ... P62861 39289545
    859073 8pj4:G (3.2) BS01 rna N/A GO:0002181 ... P62081 39289545
    859074 8pj4:H (3.2) BS01 rna N/A GO:0002181 ... P42677 39289545
    859075 8pj4:I (3.2) BS01 rna N/A GO:0000462 ... P62277 39289545
    859076 8pj4:J (3.2) BS01 rna N/A GO:0002181 ... P62244 39289545
    859077 8pj4:L (3.2) BS01 rna N/A GO:0002181 ... P15880 39289545
    859078 8pj4:M (3.2) BS01 rna N/A GO:0002181 ... P08708 39289545
    859079 8pj4:N (3.2) BS01 rna N/A GO:0000028 ... P08865 39289545
    859080 8pj4:O (3.2) BS01 rna N/A GO:0002181 ... P61247 39289545
    859081 8pj4:P (3.2) BS01 rna N/A GO:0000028 ... P62263 39289545
    859082 8pj4:Q (3.2) BS01 rna N/A GO:0002181 ... P62854 39289545
    859083 8pj4:Q (3.2) BS02 ZN N/A GO:0002181 ... P62854 39289545
    859084 8pj4:R (3.2) BS01 rna N/A GO:0002181 ... P62241 39289545
    859085 8pj4:S (3.2) BS01 rna N/A GO:0002181 ... P62753 39289545
    859086 8pj4:T (3.2) BS01 rna N/A GO:0002181 ... P62847 39289545
    859087 8pj4:V (3.2) BS01 rna N/A GO:0002181 ... P46782 39289545
    859088 8pj4:Y (3.2) BS01 rna N/A GO:0000462 ... P62249 39289545
    859089 8pj4:Z (3.2) BS01 rna N/A GO:0001228 ... P23396 39289545
    859090 8pj4:Z (3.2) BS02 rna N/A GO:0001228 ... P23396 39289545
    859091 8pj4:a (3.2) BS01 rna N/A GO:0002181 ... P46783 39289545
    859092 8pj4:b (3.2) BS01 rna N/A GO:0000056 ... P62841 39289545
    859093 8pj4:b (3.2) BS02 rna N/A GO:0000056 ... P62841 39289545
    859094 8pj4:b (3.2) BS03 rna N/A GO:0000056 ... P62841 39289545
    859095 8pj4:c (3.2) BS01 rna N/A GO:0001891 ... P63244 39289545
    859096 8pj4:d (3.2) BS01 rna N/A GO:0000028 ... P39019 39289545
    859097 8pj4:e (3.2) BS01 rna N/A GO:0002181 ... P62851 39289545
    859098 8pj4:e (3.2) BS02 rna N/A GO:0002181 ... P62851 39289545
    859099 8pj4:f (3.2) BS01 rna N/A GO:0002181 ... P62269 39289545
    859100 8pj4:f (3.2) BS02 rna N/A GO:0002181 ... P62269 39289545
    859101 8pj4:f (3.2) BS03 MG N/A GO:0002181 ... P62269 39289545
    859102 8pj4:h (3.2) BS01 rna N/A GO:0002181 ... P60866 39289545
    859103 8pj4:i (3.2) BS01 rna N/A GO:0002181 ... P62273 39289545
    859104 8pj4:k (3.2) BS01 rna N/A GO:0002181 ... P62979 39289545
    859105 8pj4:k (3.2) BS02 ZN N/A GO:0002181 ... P62979 39289545
    859106 8pj4:m (3.2) BS01 rna N/A GO:0002181 ... P25398 39289545
    859107 8pj4:n (3.2) BS01 rna N/A GO:0000028 ... P62857 39289545
    859108 8pj4:o (3.2) BS01 rna N/A GO:0001732 ... O75821 39289545
    859109 8pj4:q (3.2) BS01 rna N/A GO:0003723 ... P47813 39289545
    859110 8pj4:q (3.2) BS02 rna N/A GO:0003723 ... P47813 39289545
    859111 8pj4:q (3.2) BS03 rna N/A GO:0003723 ... P47813 39289545
    859112 8pj4:r (3.2) BS01 rna N/A GO:0000423 ... P05198 39289545
    859113 8pj4:r (3.2) BS02 rna N/A GO:0000423 ... P05198 39289545
    859114 8pj4:u (3.2) BS01 rna N/A GO:0001732 ... Q14152 39289545
    859115 8pj4:x (3.2) BS01 rna N/A GO:0001732 ... O15371 39289545
    859116 8pj4:x (3.2) BS02 rna N/A GO:0001732 ... O15371 39289545
    859117 8pj4:y (3.2) BS01 rna N/A GO:0001732 ... Q99613 39289545
    859118 8pj4:y (3.2) BS02 rna N/A GO:0001732 ... Q99613 39289545
    859119 8pj5:0 (2.9) BS01 rna N/A GO:0000049 ... O60841 39289545
    859120 8pj5:0 (2.9) BS02 rna N/A GO:0000049 ... O60841 39289545
    859121 8pj5:0 (2.9) BS03 MG N/A GO:0000049 ... O60841 39289545
    859122 8pj5:0 (2.9) BS04 GTP N/A GO:0000049 ... O60841 39289545
    859123 8pj5:1 (2.9) BS01 rna N/A GO:0001732 ... P55884 39289545
    859124 8pj5:8 (2.9) BS01 rna N/A GO:0001732 ... O15372 39289545
    859125 8pj5:B (2.9) BS01 rna N/A GO:0002181 ... P62280 39289545
    859126 8pj5:C (2.9) BS01 rna N/A GO:0002181 ... P62701 39289545
    859127 8pj5:D (2.9) BS01 rna N/A GO:0002181 ... P46781 39289545
    859128 8pj5:E (2.9) BS01 rna N/A GO:0002181 ... P62266 39289545
    859129 8pj5:F (2.9) BS01 rna N/A GO:0003735 ... P62861 39289545
    859130 8pj5:F (2.9) BS02 rna N/A GO:0003735 ... P62861 39289545
    859131 8pj5:G (2.9) BS01 rna N/A GO:0002181 ... P62081 39289545
    859132 8pj5:H (2.9) BS01 rna N/A GO:0002181 ... P42677 39289545
    859133 8pj5:I (2.9) BS01 rna N/A GO:0000462 ... P62277 39289545
    859134 8pj5:J (2.9) BS01 rna N/A GO:0002181 ... P62244 39289545
    859135 8pj5:L (2.9) BS01 rna N/A GO:0002181 ... P15880 39289545
    859136 8pj5:L (2.9) BS02 rna N/A GO:0002181 ... P15880 39289545
    859137 8pj5:M (2.9) BS01 rna N/A GO:0002181 ... P08708 39289545
    859138 8pj5:N (2.9) BS01 rna N/A GO:0000028 ... P08865 39289545
    859139 8pj5:O (2.9) BS01 rna N/A GO:0002181 ... P61247 39289545
    859140 8pj5:P (2.9) BS01 rna N/A GO:0000028 ... P62263 39289545
    859141 8pj5:Q (2.9) BS01 rna N/A GO:0002181 ... P62854 39289545
    859142 8pj5:Q (2.9) BS02 rna N/A GO:0002181 ... P62854 39289545
    859143 8pj5:Q (2.9) BS03 ZN N/A GO:0002181 ... P62854 39289545
    859144 8pj5:R (2.9) BS01 rna N/A GO:0002181 ... P62241 39289545
    859145 8pj5:S (2.9) BS01 rna N/A GO:0002181 ... P62753 39289545
    859146 8pj5:T (2.9) BS01 rna N/A GO:0002181 ... P62847 39289545
    859147 8pj5:V (2.9) BS01 rna N/A GO:0002181 ... P46782 39289545
    859148 8pj5:V (2.9) BS02 MG N/A GO:0002181 ... P46782 39289545
    859149 8pj5:Y (2.9) BS01 rna N/A GO:0000462 ... P62249 39289545
    859150 8pj5:Z (2.9) BS01 rna N/A GO:0001228 ... P23396 39289545
    859151 8pj5:Z (2.9) BS02 rna N/A GO:0001228 ... P23396 39289545
    859152 8pj5:a (2.9) BS01 rna N/A GO:0002181 ... P46783 39289545
    859153 8pj5:b (2.9) BS01 rna N/A GO:0000056 ... P62841 39289545
    859154 8pj5:b (2.9) BS02 rna N/A GO:0000056 ... P62841 39289545
    859155 8pj5:b (2.9) BS03 rna N/A GO:0000056 ... P62841 39289545
    859156 8pj5:c (2.9) BS01 rna N/A GO:0001891 ... P63244 39289545
    859157 8pj5:d (2.9) BS01 rna N/A GO:0000028 ... P39019 39289545
    859158 8pj5:e (2.9) BS01 rna N/A GO:0002181 ... P62851 39289545
    859159 8pj5:e (2.9) BS02 rna N/A GO:0002181 ... P62851 39289545
    859160 8pj5:f (2.9) BS01 rna N/A GO:0002181 ... P62269 39289545
    859161 8pj5:f (2.9) BS02 rna N/A GO:0002181 ... P62269 39289545
    859162 8pj5:f (2.9) BS03 MG N/A GO:0002181 ... P62269 39289545
    859163 8pj5:h (2.9) BS01 rna N/A GO:0002181 ... P60866 39289545
    859164 8pj5:i (2.9) BS01 rna N/A GO:0002181 ... P62273 39289545
    859165 8pj5:k (2.9) BS01 rna N/A GO:0002181 ... P62979 39289545
    859166 8pj5:k (2.9) BS02 ZN N/A GO:0002181 ... P62979 39289545
    859167 8pj5:m (2.9) BS01 rna N/A GO:0002181 ... P25398 39289545
    859168 8pj5:n (2.9) BS01 rna N/A GO:0000028 ... P62857 39289545
    859169 8pj5:o (2.9) BS01 rna N/A GO:0001732 ... O75821 39289545
    859170 8pj5:q (2.9) BS01 rna N/A GO:0003723 ... P47813 39289545
    859171 8pj5:q (2.9) BS02 rna N/A GO:0003723 ... P47813 39289545
    859172 8pj5:u (2.9) BS01 rna N/A GO:0001732 ... Q14152 39289545
    859173 8pj5:x (2.9) BS01 rna N/A GO:0001732 ... O15371 39289545
    859174 8pj5:x (2.9) BS02 rna N/A GO:0001732 ... O15371 39289545
    859175 8pj5:y (2.9) BS01 rna N/A GO:0001732 ... Q99613 39289545
    859176 8pj6:1 (2.9) BS01 rna N/A GO:0001732 ... P55884 39289545
    859177 8pj6:B (2.9) BS01 rna N/A GO:0002181 ... P62280 39289545
    859178 8pj6:C (2.9) BS01 rna N/A GO:0002181 ... P62701 39289545
    859179 8pj6:D (2.9) BS01 rna N/A GO:0002181 ... P46781 39289545
    859180 8pj6:E (2.9) BS01 rna N/A GO:0002181 ... P62266 39289545
    859181 8pj6:F (2.9) BS01 rna N/A GO:0003735 ... P62861 39289545
    859182 8pj6:G (2.9) BS01 rna N/A GO:0002181 ... P62081 39289545
    859183 8pj6:H (2.9) BS01 rna N/A GO:0002181 ... P42677 39289545
    859184 8pj6:I (2.9) BS01 rna N/A GO:0000462 ... P62277 39289545
    859185 8pj6:J (2.9) BS01 rna N/A GO:0002181 ... P62244 39289545
    859186 8pj6:L (2.9) BS01 rna N/A GO:0002181 ... P15880 39289545
    859187 8pj6:M (2.9) BS01 rna N/A GO:0002181 ... P08708 39289545
    859188 8pj6:N (2.9) BS01 rna N/A GO:0000028 ... P08865 39289545
    859189 8pj6:O (2.9) BS01 rna N/A GO:0002181 ... P61247 39289545
    859190 8pj6:P (2.9) BS01 rna N/A GO:0000028 ... P62263 39289545
    859191 8pj6:Q (2.9) BS01 rna N/A GO:0002181 ... P62854 39289545
    859192 8pj6:Q (2.9) BS02 rna N/A GO:0002181 ... P62854 39289545
    859193 8pj6:Q (2.9) BS03 ZN N/A GO:0002181 ... P62854 39289545
    859194 8pj6:R (2.9) BS01 rna N/A GO:0002181 ... P62241 39289545
    859195 8pj6:S (2.9) BS01 rna N/A GO:0002181 ... P62753 39289545
    859196 8pj6:T (2.9) BS01 rna N/A GO:0002181 ... P62847 39289545
    859197 8pj6:V (2.9) BS01 rna N/A GO:0002181 ... P46782 39289545
    859198 8pj6:Y (2.9) BS01 rna N/A GO:0000462 ... P62249 39289545
    859199 8pj6:Z (2.9) BS01 rna N/A GO:0001228 ... P23396 39289545
    859200 8pj6:Z (2.9) BS02 rna N/A GO:0001228 ... P23396 39289545

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).