SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    859201 8q87:AG (2.4) BS01 rna N/A GO:0002181 ... A0A8V0Z8V3 N/A
    859202 8q87:AG (2.4) BS02 MG N/A GO:0002181 ... A0A8V0Z8V3 N/A
    859203 8q87:AG (2.4) BS03 ZN N/A GO:0002181 ... A0A8V0Z8V3 N/A
    859204 8q87:AZ (2.4) BS01 rna N/A GO:0000028 ... P50890 N/A
    859205 8q87:Aa (2.4) BS01 rna N/A GO:0003735 ... N/A N/A
    859206 8q87:Ab (2.4) BS01 rna N/A GO:0003723 ... A0A8V0Z891 N/A
    859207 8q87:Ac (2.4) BS01 rna N/A GO:0000977 ... F1NPA9 N/A
    859208 8q87:Ad (2.4) BS01 rna N/A GO:0003723 ... P47836 N/A
    859209 8q87:Ae (2.4) BS01 rna N/A GO:0003723 ... G1TFM5 N/A
    859210 8q87:Af (2.4) BS01 rna N/A GO:0002181 ... P47838 N/A
    859211 8q87:Ag (2.4) BS01 rna N/A GO:0001843 ... F1NN16 N/A
    859212 8q87:Ah (2.4) BS01 rna N/A GO:0003735 ... F1NB02 N/A
    859213 8q87:Ah (2.4) BS02 rna N/A GO:0003735 ... F1NB02 N/A
    859214 8q87:Ai (2.4) BS01 rna N/A GO:0003723 ... B7NZS8 N/A
    859215 8q87:Aj (2.4) BS01 rna N/A GO:0003723 ... E1C4N0 N/A
    859216 8q87:Ak (2.4) BS01 rna N/A GO:0003735 ... Q98TH5 N/A
    859217 8q87:Ak (2.4) BS02 MG N/A GO:0003735 ... Q98TH5 N/A
    859218 8q87:Al (2.4) BS01 rna N/A GO:0003735 ... P84175 N/A
    859219 8q87:Am (2.4) BS01 rna N/A GO:0003729 ... Q6ITC7 N/A
    859220 8q87:Am (2.4) BS02 rna N/A GO:0003729 ... Q6ITC7 N/A
    859221 8q87:An (2.4) BS01 rna N/A GO:0000028 ... Q5ZHW8 N/A
    859222 8q87:Ao (2.4) BS01 rna N/A GO:0000028 ... P62846 N/A
    859223 8q87:Ao (2.4) BS02 rna N/A GO:0000028 ... P62846 N/A
    859224 8q87:Ap (2.4) BS01 rna N/A GO:0000462 ... R4GGJ0 N/A
    859225 8q87:Aq (2.4) BS01 rna N/A GO:0003735 ... P08636 N/A
    859226 8q87:Ar (2.4) BS01 rna N/A GO:0003676 ... G1TPG3 N/A
    859227 8q87:As (2.4) BS01 rna N/A GO:0003735 ... N/A N/A
    859228 8q87:At (2.4) BS01 rna N/A GO:0003723 ... F1NH93 N/A
    859229 8q87:At (2.4) BS02 MG N/A GO:0003723 ... F1NH93 N/A
    859230 8q87:Av (2.4) BS01 rna N/A GO:0003735 ... A0A3Q3A7P6 N/A
    859231 8q87:Aw (2.4) BS01 rna N/A GO:0003735 ... N/A N/A
    859232 8q87:Ax (2.4) BS01 rna N/A GO:0003735 ... F1NF89 N/A
    859233 8q87:Ay (2.4) BS01 rna N/A N/A A0A8V1A7V4 N/A
    859234 8q87:BA (2.4) BS01 rna N/A GO:0002181 ... F1NIX0 N/A
    859235 8q87:BA (2.4) BS02 MG N/A GO:0002181 ... F1NIX0 N/A
    859236 8q87:BA (2.4) BS03 MG N/A GO:0002181 ... F1NIX0 N/A
    859237 8q87:BB (2.4) BS01 rna N/A GO:0003735 ... Q5ZJZ2 N/A
    859238 8q87:BB (2.4) BS02 MG N/A GO:0003735 ... Q5ZJZ2 N/A
    859239 8q87:BB (2.4) BS03 MG N/A GO:0003735 ... Q5ZJZ2 N/A
    859240 8q87:BC (2.4) BS01 rna N/A GO:0003735 ... Q5ZII1 N/A
    859241 8q87:BC (2.4) BS02 rna N/A GO:0003735 ... Q5ZII1 N/A
    859242 8q87:BD (2.4) BS01 rna N/A GO:0000027 ... P22451 N/A
    859243 8q87:BD (2.4) BS02 rna N/A GO:0000027 ... P22451 N/A
    859244 8q87:BE (2.4) BS01 rna N/A GO:0003735 ... Q8UWG7 N/A
    859245 8q87:BF (2.4) BS01 rna N/A GO:0000463 ... Q5ZJ56 N/A
    859246 8q87:BF (2.4) BS02 rna N/A GO:0000463 ... Q5ZJ56 N/A
    859247 8q87:BG (2.4) BS01 rna N/A GO:0000470 ... P32429 N/A
    859248 8q87:BG (2.4) BS02 rna N/A GO:0000470 ... P32429 N/A
    859249 8q87:BH (2.4) BS01 rna N/A GO:0002181 ... A0A1D5NVI1 N/A
    859250 8q87:BH (2.4) BS02 MG N/A GO:0002181 ... A0A1D5NVI1 N/A
    859251 8q87:BI (2.4) BS01 rna N/A GO:0003735 ... Q08200 N/A
    859252 8q87:BI (2.4) BS02 rna N/A GO:0003735 ... Q08200 N/A
    859253 8q87:BI (2.4) BS03 MG N/A GO:0003735 ... Q08200 N/A
    859254 8q87:BJ (2.4) BS01 rna N/A GO:0003735 ... A0A1D5P3B1 N/A
    859255 8q87:BJ (2.4) BS02 rna N/A GO:0003735 ... A0A1D5P3B1 N/A
    859256 8q87:BL (2.4) BS01 rna N/A GO:0003723 ... P41125 N/A
    859257 8q87:BL (2.4) BS02 rna N/A GO:0003723 ... P41125 N/A
    859258 8q87:BM (2.4) BS01 rna N/A GO:0003723 ... Q98TF9 N/A
    859259 8q87:BN (2.4) BS01 rna N/A GO:0002181 ... F1NQG5 N/A
    859260 8q87:BN (2.4) BS02 rna N/A GO:0002181 ... F1NQG5 N/A
    859261 8q87:BN (2.4) BS03 MG N/A GO:0002181 ... F1NQG5 N/A
    859262 8q87:BO (2.4) BS01 rna N/A GO:0003735 ... N/A N/A
    859263 8q87:BP (2.4) BS01 rna N/A GO:0002181 ... A0A1D5PR40 N/A
    859264 8q87:BP (2.4) BS02 rna N/A GO:0002181 ... A0A1D5PR40 N/A
    859265 8q87:BP (2.4) BS03 MG N/A GO:0002181 ... A0A1D5PR40 N/A
    859266 8q87:BQ (2.4) BS01 rna N/A GO:0003735 ... N/A N/A
    859267 8q87:BR (2.4) BS01 rna N/A GO:0003723 ... Q5ZKK8 N/A
    859268 8q87:BR (2.4) BS02 rna N/A GO:0003723 ... Q5ZKK8 N/A
    859269 8q87:BS (2.4) BS01 rna N/A GO:0003735 ... N/A N/A
    859270 8q87:BS (2.4) BS02 rna N/A GO:0003735 ... N/A N/A
    859271 8q87:BT (2.4) BS01 rna N/A GO:0003735 ... R4GIQ2 N/A
    859272 8q87:BT (2.4) BS02 rna N/A GO:0003735 ... R4GIQ2 N/A
    859273 8q87:BU (2.4) BS01 rna N/A GO:0002181 ... Q98TF8 N/A
    859274 8q87:BV (2.4) BS01 rna N/A GO:0003735 ... N/A N/A
    859275 8q87:BW (2.4) BS01 rna N/A GO:0003735 ... A0A8V0XRE7 N/A
    859276 8q87:BX (2.4) BS01 rna N/A GO:0003735 ... N/A N/A
    859277 8q87:BX (2.4) BS02 rna N/A GO:0003735 ... N/A N/A
    859278 8q87:BY (2.4) BS01 rna N/A GO:0003723 ... F2Z4K6 N/A
    859279 8q87:BY (2.4) BS02 rna N/A GO:0003723 ... F2Z4K6 N/A
    859280 8q87:BZ (2.4) BS01 rna N/A GO:0003735 ... P61355 N/A
    859281 8q87:Ba (2.4) BS01 rna N/A GO:0003735 ... N/A N/A
    859282 8q87:Bb (2.4) BS01 rna N/A GO:0002181 ... A0A1L1RNZ2 N/A
    859283 8q87:Bb (2.4) BS02 MG N/A GO:0002181 ... A0A1L1RNZ2 N/A
    859284 8q87:Bb (2.4) BS03 MG N/A GO:0002181 ... A0A1L1RNZ2 N/A
    859285 8q87:Bc (2.4) BS01 rna N/A GO:0003723 ... P67883 N/A
    859286 8q87:Bd (2.4) BS01 rna N/A GO:0002181 ... A0A1L1RT94 N/A
    859287 8q87:Be (2.4) BS01 rna N/A GO:0003735 ... E1BVB1 N/A
    859288 8q87:Be (2.4) BS02 MG N/A GO:0003735 ... E1BVB1 N/A
    859289 8q87:Be (2.4) BS03 MG N/A GO:0003735 ... E1BVB1 N/A
    859290 8q87:Bf (2.4) BS01 rna N/A GO:0003735 ... N/A N/A
    859291 8q87:Bf (2.4) BS02 MG N/A GO:0003735 ... N/A N/A
    859292 8q87:Bg (2.4) BS01 rna N/A GO:0003735 ... A0A1L1S0X5 N/A
    859293 8q87:Bg (2.4) BS02 MG N/A GO:0003735 ... A0A1L1S0X5 N/A
    859294 8q87:Bg (2.4) BS03 ZN N/A GO:0003735 ... A0A1L1S0X5 N/A
    859295 8q87:Bh (2.4) BS01 rna N/A GO:0000463 ... Q98TF7 N/A
    859296 8q87:Bh (2.4) BS02 rna N/A GO:0000463 ... Q98TF7 N/A
    859297 8q87:Bi (2.4) BS01 rna N/A GO:0002181 ... Q98TF6 N/A
    859298 8q87:Bj (2.4) BS01 rna N/A GO:0003723 ... E1C810 N/A
    859299 8q87:Bj (2.4) BS02 rna N/A GO:0003723 ... E1C810 N/A
    859300 8q87:Bj (2.4) BS03 ZN N/A GO:0003723 ... E1C810 N/A
    859301 8q87:Bk (2.4) BS01 rna N/A GO:0003735 ... E1BU66 N/A
    859302 8q87:Bl (2.4) BS01 rna N/A GO:0003735 ... Q98TF5 N/A
    859303 8q87:Bl (2.4) BS02 rna N/A GO:0003735 ... Q98TF5 N/A
    859304 8q87:Bm (2.4) BS01 rna N/A GO:0003735 ... O42388 N/A
    859305 8q87:Bm (2.4) BS02 ZN N/A GO:0003735 ... O42388 N/A
    859306 8q87:Bo (2.4) BS01 rna N/A GO:0003735 ... A0A8V0YUB1 N/A
    859307 8q87:Bo (2.4) BS02 rna N/A GO:0003735 ... A0A8V0YUB1 N/A
    859308 8q87:Bo (2.4) BS03 MG N/A GO:0003735 ... A0A8V0YUB1 N/A
    859309 8q87:Bo (2.4) BS04 ZN N/A GO:0003735 ... A0A8V0YUB1 N/A
    859310 8q87:Bp (2.4) BS01 rna N/A GO:0003735 ... P32046 N/A
    859311 8q87:Bp (2.4) BS02 ZN N/A GO:0003735 ... P32046 N/A
    859312 8q87:Br (2.4) BS01 rna N/A GO:0003735 ... Q5F346 N/A
    859313 8q87:Bs (2.4) BS01 rna N/A GO:0002181 ... P47826 N/A
    859314 8q87:Bt (2.4) BS01 rna N/A GO:0003735 ... E1BTG1 N/A
    859315 8q87:Bv (2.4) BS01 rna N/A GO:0002181 ... F6SU35 N/A
    859316 8q87:Bv (2.4) BS02 rna N/A GO:0002181 ... F6SU35 N/A
    859317 8q87:S (2.4) BS01 rna N/A GO:0003723 ... A0A8V0ZUK5 N/A
    859318 8q8g:A (2.4) BS01 SAH N/A GO:0004482 ... O43148 N/A
    859319 8q8g:A (2.4) BS02 O94 N/A GO:0004482 ... O43148 N/A
    859320 8q8g:B (2.4) BS01 SAH N/A GO:0004482 ... O43148 N/A
    859321 8q8g:B (2.4) BS02 O94 N/A GO:0004482 ... O43148 N/A
    859322 8q8i:A (1.77) BS01 CA N/A GO:0046872 ... Q89410 39555664
    859323 8q8i:A (1.77) BS02 CA N/A GO:0046872 ... Q89410 39555664
    859324 8q8i:A (1.77) BS03 MG N/A GO:0046872 ... Q89410 39555664
    859325 8q8i:A (1.77) BS04 MG N/A GO:0046872 ... Q89410 39555664
    859326 8q8i:A (1.77) BS05 MG N/A GO:0046872 ... Q89410 39555664
    859327 8q8i:A (1.77) BS06 O5R N/A GO:0046872 ... Q89410 39555664
    859328 8q8k:A (2.7) BS01 peptide ? GO:0005737 ... P52293 38108201
    859329 8q8k:B (2.7) BS01 peptide ? GO:0005737 ... P52293 38108201
    859330 8q8o:B (2.7) BS01 7MT ? N/A A0A0H2ZF40 38505547
    859331 8q8p:A (2.68) BS01 MG N/A N/A G0S186 39609652
    859332 8q8p:A (2.68) BS02 MG N/A N/A G0S186 39609652
    859333 8q8p:B (2.68) BS01 MG N/A N/A G0S186 39609652
    859334 8q8p:C (2.68) BS01 MG N/A N/A G0S186 39609652
    859335 8q8p:D (2.68) BS01 MG N/A N/A G0S186 39609652
    859336 8q8p:E (2.68) BS01 MG N/A N/A G0S186 39609652
    859337 8q8q:A (3.22) BS01 LOP N/A N/A G0S186 39609652
    859338 8q8q:A (3.22) BS02 LOP N/A N/A G0S186 39609652
    859339 8q8q:B (3.22) BS01 LOP N/A N/A G0S186 39609652
    859340 8q8q:B (3.22) BS02 LOP N/A N/A G0S186 39609652
    859341 8q8q:C (3.22) BS01 LOP N/A N/A G0S186 39609652
    859342 8q8q:C (3.22) BS02 LOP N/A N/A G0S186 39609652
    859343 8q8q:D (3.22) BS01 LOP N/A N/A G0S186 39609652
    859344 8q8q:D (3.22) BS02 LOP N/A N/A G0S186 39609652
    859345 8q8q:E (3.22) BS01 LOP N/A N/A G0S186 39609652
    859346 8q8q:E (3.22) BS02 LOP N/A N/A G0S186 39609652
    859347 8q91:A (3.1) BS01 rna ? GO:0000244 ... Q6P2Q9 38467877
    859348 8q91:A (3.1) BS02 peptide ? GO:0000244 ... Q6P2Q9 38467877
    859349 8q91:C (3.1) BS01 GTP ? GO:0000398 ... Q15029 38467877
    859350 8q91:h (3.1) BS01 rna ? GO:0000387 ... P14678 38467877
    859351 8q91:i (3.1) BS01 rna ? GO:0000243 ... P62314 38467877
    859352 8q91:j (3.1) BS01 rna ? GO:0000245 ... P62316 38467877
    859353 8q91:m (3.1) BS01 rna ? GO:0000387 ... P62306 38467877
    859354 8q91:n (3.1) BS01 rna ? GO:0000245 ... P62308 38467877
    859355 8q9n:A (1.51) BS01 dna N/A GO:0000977 ... Q05BX2 38492719
    859356 8q9n:A (1.51) BS02 dna N/A GO:0000977 ... Q05BX2 38492719
    859357 8q9n:B (1.51) BS01 dna N/A GO:0000977 ... Q05BX2 38492719
    859358 8q9n:B (1.51) BS02 dna N/A GO:0000977 ... Q05BX2 38492719
    859359 8q9n:B (1.51) BS03 peptide N/A GO:0000977 ... Q05BX2 38492719
    859360 8q9p:A (2.2) BS01 dna ? GO:0000977 ... Q05BX2 38492719
    859361 8q9p:A (2.2) BS02 dna ? GO:0000977 ... Q05BX2 38492719
    859362 8q9p:B (2.2) BS01 peptide ? GO:0000977 ... Q05BX2 38492719
    859363 8q9p:B (2.2) BS02 dna ? GO:0000977 ... Q05BX2 38492719
    859364 8q9p:B (2.2) BS03 dna ? GO:0000977 ... Q05BX2 38492719
    859365 8q9q:A (2.11) BS01 peptide ? GO:0000977 ... Q05BX2 38492719
    859366 8q9q:A (2.11) BS02 dna ? GO:0000977 ... Q05BX2 38492719
    859367 8q9q:A (2.11) BS03 dna ? GO:0000977 ... Q05BX2 38492719
    859368 8q9q:B (2.11) BS01 peptide ? GO:0000977 ... Q05BX2 38492719
    859369 8q9q:B (2.11) BS02 dna ? GO:0000977 ... Q05BX2 38492719
    859370 8q9q:B (2.11) BS03 dna ? GO:0000977 ... Q05BX2 38492719
    859371 8q9r:A (2.25) BS01 peptide ? GO:0000977 ... Q05BX2 38492719
    859372 8q9r:A (2.25) BS02 dna ? GO:0000977 ... Q05BX2 38492719
    859373 8q9r:A (2.25) BS03 dna ? GO:0000977 ... Q05BX2 38492719
    859374 8q9r:B (2.25) BS01 peptide ? GO:0000977 ... Q05BX2 38492719
    859375 8q9r:B (2.25) BS02 dna ? GO:0000977 ... Q05BX2 38492719
    859376 8q9r:B (2.25) BS03 dna ? GO:0000977 ... Q05BX2 38492719
    859377 8q9r:B (2.25) BS04 dna ? GO:0000977 ... Q05BX2 38492719
    859378 8q9r:E (2.25) BS01 peptide ? GO:0000977 ... Q05BX2 38492719
    859379 8q9r:E (2.25) BS02 dna ? GO:0000977 ... Q05BX2 38492719
    859380 8q9r:E (2.25) BS03 dna ? GO:0000977 ... Q05BX2 38492719
    859381 8q9r:F (2.25) BS01 peptide ? GO:0000977 ... Q05BX2 38492719
    859382 8q9r:F (2.25) BS02 dna ? GO:0000977 ... Q05BX2 38492719
    859383 8q9r:F (2.25) BS03 dna ? GO:0000977 ... Q05BX2 38492719
    859384 8q9s:A (1.352) BS01 QBE 2.7.11.1 GO:0000785 ... P19784 N/A
    859385 8q9t:A (2.84) BS01 rna 3.6.4.13 GO:0000956 ... P35207 37879335
    859386 8q9u:A (2.0) BS01 NAD 4.2.1.49 GO:0000166 ... A0A6P2DXK2 38389448
    859387 8q9v:A (2.2) BS01 O66 4.2.1.49 GO:0000166 ... A0A6P2DXK2 38389448
    859388 8q9v:A (2.2) BS02 NAD 4.2.1.49 GO:0000166 ... A0A6P2DXK2 38389448
    859389 8q9w:A (2.5) BS01 SFG N/A GO:0004482 ... O43148 N/A
    859390 8q9w:B (2.5) BS01 SFG N/A GO:0004482 ... O43148 N/A
    859391 8q9w:B (2.5) BS02 GNP N/A GO:0004482 ... O43148 N/A
    859392 8q9x:A (1.05) BS01 OXY ? GO:0046872 ... A0A5C7ETD9 N/A
    859393 8q9x:A (1.05) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    859394 8q9x:A (1.05) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    859395 8q9x:A (1.05) BS04 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    859396 8q9x:A (1.05) BS05 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    859397 8q9x:A (1.05) BS06 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    859398 8q9x:B (1.05) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    859399 8q9x:B (1.05) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    859400 8q9x:B (1.05) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).