SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    859601 8plu:B (2.04) BS02 ZPU 1.8.1.9 GO:0003824 ... Q962Y6 38238498
    859602 8plu:B (2.04) BS03 ZPU 1.8.1.9 GO:0003824 ... Q962Y6 38238498
    859603 8plv:A (2.46) BS01 FAD 1.8.1.9 GO:0003824 ... Q962Y6 38238498
    859604 8plv:A (2.46) BS02 UXG 1.8.1.9 GO:0003824 ... Q962Y6 38238498
    859605 8plv:B (2.46) BS01 FAD 1.8.1.9 GO:0003824 ... Q962Y6 38238498
    859606 8plv:B (2.46) BS02 UXG 1.8.1.9 GO:0003824 ... Q962Y6 38238498
    859607 8plw:A (1.78) BS01 FAD 1.8.1.9 GO:0003824 ... Q962Y6 38238498
    859608 8plw:A (1.78) BS02 Q4L 1.8.1.9 GO:0003824 ... Q962Y6 38238498
    859609 8plw:A (1.78) BS03 Q4L 1.8.1.9 GO:0003824 ... Q962Y6 38238498
    859610 8plw:B (1.78) BS01 FAD 1.8.1.9 GO:0003824 ... Q962Y6 38238498
    859611 8plw:B (1.78) BS02 Q4L 1.8.1.9 GO:0003824 ... Q962Y6 38238498
    859612 8plx:A (1.77) BS01 FAD 1.8.1.9 GO:0003824 ... Q962Y6 38238498
    859613 8plx:A (1.77) BS02 O1M 1.8.1.9 GO:0003824 ... Q962Y6 38238498
    859614 8plx:B (1.77) BS01 FAD 1.8.1.9 GO:0003824 ... Q962Y6 38238498
    859615 8plx:B (1.77) BS02 O1M 1.8.1.9 GO:0003824 ... Q962Y6 38238498
    859616 8ply:A (2.43) BS01 FAD 1.8.1.9 GO:0003824 ... Q962Y6 38238498
    859617 8ply:B (2.43) BS01 FAD 1.8.1.9 GO:0003824 ... Q962Y6 38238498
    859618 8ply:B (2.43) BS02 JKG 1.8.1.9 GO:0003824 ... Q962Y6 38238498
    859619 8plz:J (1.9) BS01 ZQ6 2.7.11.22
    2.7.11.23
    GO:0000439 ... P50613 38480681
    859620 8pm0:A (2.9) BS01 rna 3.1.-.- GO:0003723 ... M9TI86 38316757
    859621 8pm0:A (2.9) BS02 peptide 3.1.-.- GO:0003723 ... M9TI86 38316757
    859622 8pm0:A (2.9) BS03 peptide 3.1.-.- GO:0003723 ... M9TI86 38316757
    859623 8pm0:B (2.9) BS01 rna 2.7.7.48 GO:0000166 ... M9TLW3 38316757
    859624 8pm0:B (2.9) BS02 MG 2.7.7.48 GO:0000166 ... M9TLW3 38316757
    859625 8pm0:C (2.9) BS01 rna ? GO:0001172 ... X5F427 38316757
    859626 8pm1:A (1.5) BS01 FMN 2.7.13.3 N/A B8GAY9 38038877
    859627 8pm1:B (1.5) BS01 FMN 2.7.13.3 N/A B8GAY9 38038877
    859628 8pm2:R (2.92) BS01 8IA ? GO:0001594 ... Q5QD08 37461561
    859629 8pm2:R (2.92) BS02 Y01 ? GO:0001594 ... Q5QD08 37461561
    859630 8pm3:A (2.0) BS01 ZLE 2.7.12.2 GO:0004672 ... P52564 39716901
    859631 8pm3:B (2.0) BS01 ZLE 2.7.12.2 GO:0004672 ... P52564 39716901
    859632 8pm3:C (2.0) BS01 ZLE 2.7.12.2 GO:0004672 ... P52564 39716901
    859633 8pm3:D (2.0) BS01 ZLE 2.7.12.2 GO:0004672 ... P52564 39716901
    859634 8pm4:A (2.93) BS01 rna ? N/A H5TRP0 38261981
    859635 8pm4:A (2.93) BS02 dna ? N/A H5TRP0 38261981
    859636 8pm4:A (2.93) BS03 dna ? N/A H5TRP0 38261981
    859637 8pm5:A (2.4) BS01 dna N/A GO:0000981 ... Q9NY43 39753777
    859638 8pm5:A (2.4) BS02 dna N/A GO:0000981 ... Q9NY43 39753777
    859639 8pm5:A (2.4) BS03 dna N/A GO:0000981 ... Q9NY43 39753777
    859640 8pm5:D (2.4) BS01 dna N/A GO:0000981 ... Q9NY43 39753777
    859641 8pm5:D (2.4) BS02 dna N/A GO:0000981 ... Q9NY43 39753777
    859642 8pm5:D (2.4) BS03 dna N/A GO:0000981 ... Q9NY43 39753777
    859643 8pm5:G (2.4) BS01 dna N/A GO:0000981 ... Q9NY43 39753777
    859644 8pm5:G (2.4) BS02 dna N/A GO:0000981 ... Q9NY43 39753777
    859645 8pm5:J (2.4) BS01 dna N/A GO:0000981 ... Q9NY43 39753777
    859646 8pm5:J (2.4) BS02 dna N/A GO:0000981 ... Q9NY43 39753777
    859647 8pm5:M (2.4) BS01 dna N/A GO:0000981 ... Q9NY43 39753777
    859648 8pm6:A (3.22) BS01 CLR 7.6.2.- GO:0005515 ... O95342 37949847
    859649 8pm6:A (3.22) BS02 CLR 7.6.2.- GO:0005515 ... O95342 37949847
    859650 8pm6:A (3.22) BS03 CLR 7.6.2.- GO:0005515 ... O95342 37949847
    859651 8pm6:A (3.22) BS04 CLR 7.6.2.- GO:0005515 ... O95342 37949847
    859652 8pm6:A (3.22) BS05 CLR 7.6.2.- GO:0005515 ... O95342 37949847
    859653 8pm6:A (3.22) BS06 CLR 7.6.2.- GO:0005515 ... O95342 37949847
    859654 8pm6:A (3.22) BS07 CLR 7.6.2.- GO:0005515 ... O95342 37949847
    859655 8pm6:A (3.22) BS08 GBM 7.6.2.- GO:0005515 ... O95342 37949847
    859656 8pm7:A (1.7) BS01 dna N/A GO:0000981 ... Q9NY43 39753777
    859657 8pm7:A (1.7) BS02 dna N/A GO:0000981 ... Q9NY43 39753777
    859658 8pm7:A (1.7) BS03 dna N/A GO:0000981 ... Q9NY43 39753777
    859659 8pm7:C (1.7) BS01 dna N/A GO:0000981 ... Q9NY43 39753777
    859660 8pm7:C (1.7) BS02 dna N/A GO:0000981 ... Q9NY43 39753777
    859661 8pm7:E (1.7) BS01 dna N/A GO:0000981 ... Q9NY43 39753777
    859662 8pm7:E (1.7) BS02 dna N/A GO:0000981 ... Q9NY43 39753777
    859663 8pm7:E (1.7) BS03 dna N/A GO:0000981 ... Q9NY43 39753777
    859664 8pm7:G (1.7) BS01 dna N/A GO:0000981 ... Q9NY43 39753777
    859665 8pm7:G (1.7) BS02 dna N/A GO:0000981 ... Q9NY43 39753777
    859666 8pm8:A (1.57) BS01 TCW ? GO:0001523 ... P02766 37837673
    859667 8pm8:B (1.57) BS01 TCW ? GO:0001523 ... P02766 37837673
    859668 8pm9:A (1.85) BS01 ZP2 ? GO:0001523 ... P02766 37837673
    859669 8pm9:B (1.85) BS01 ZP2 ? GO:0001523 ... P02766 37837673
    859670 8pma:A (1.2) BS01 ZP2 ? GO:0001523 ... P02766 37837673
    859671 8pma:B (1.2) BS01 ZP2 ? GO:0001523 ... P02766 37837673
    859672 8pmc:A (1.85) BS01 dna N/A GO:0000981 ... Q9NY43 39753777
    859673 8pmc:A (1.85) BS02 dna N/A GO:0000981 ... Q9NY43 39753777
    859674 8pmc:A (1.85) BS03 dna N/A GO:0000981 ... Q9NY43 39753777
    859675 8pmc:C (1.85) BS01 dna N/A GO:0000981 ... Q9NY43 39753777
    859676 8pmc:C (1.85) BS02 dna N/A GO:0000981 ... Q9NY43 39753777
    859677 8pmc:E (1.85) BS01 dna N/A GO:0000981 ... Q9NY43 39753777
    859678 8pmc:E (1.85) BS02 dna N/A GO:0000981 ... Q9NY43 39753777
    859679 8pmc:E (1.85) BS03 dna N/A GO:0000981 ... Q9NY43 39753777
    859680 8pmc:G (1.85) BS01 dna N/A GO:0000981 ... Q9NY43 39753777
    859681 8pmc:G (1.85) BS02 dna N/A GO:0000981 ... Q9NY43 39753777
    859682 8pmd:A (2.95) BS01 ATP 7.6.2.- GO:0005515 ... O95342 37949847
    859683 8pmd:A (2.95) BS02 ATP 7.6.2.- GO:0005515 ... O95342 37949847
    859684 8pmd:A (2.95) BS03 MG 7.6.2.- GO:0005515 ... O95342 37949847
    859685 8pmd:A (2.95) BS04 MG 7.6.2.- GO:0005515 ... O95342 37949847
    859686 8pme:A (2.15) BS01 ATP ? N/A A0A8K1DE77 38600265
    859687 8pme:A (2.15) BS02 MG ? N/A A0A8K1DE77 38600265
    859688 8pme:B (2.15) BS01 ATP ? N/A A0A8K1DE77 38600265
    859689 8pme:B (2.15) BS02 MG ? N/A A0A8K1DE77 38600265
    859690 8pme:C (2.15) BS01 ATP ? N/A A0A8K1DE77 38600265
    859691 8pme:C (2.15) BS02 MG ? N/A A0A8K1DE77 38600265
    859692 8pmf:A (0.95) BS01 dna N/A GO:0000981 ... Q9NY43 39753777
    859693 8pmf:A (0.95) BS02 dna N/A GO:0000981 ... Q9NY43 39753777
    859694 8pmg:A (3.29) BS01 ATP ? N/A B4XT64 38600265
    859695 8pmg:A (3.29) BS02 MG ? N/A B4XT64 38600265
    859696 8pmg:B (3.29) BS01 ATP ? N/A B4XT64 38600265
    859697 8pmg:B (3.29) BS02 MG ? N/A B4XT64 38600265
    859698 8pmg:C (3.29) BS01 ATP ? N/A B4XT64 38600265
    859699 8pmg:C (3.29) BS02 MG ? N/A B4XT64 38600265
    859700 8pmg:D (3.29) BS01 ATP ? N/A B4XT64 38600265
    859701 8pmg:D (3.29) BS02 MG ? N/A B4XT64 38600265
    859702 8pmg:E (3.29) BS01 ATP ? N/A B4XT64 38600265
    859703 8pmg:E (3.29) BS02 MG ? N/A B4XT64 38600265
    859704 8pmg:F (3.29) BS01 ATP ? N/A B4XT64 38600265
    859705 8pmg:F (3.29) BS02 MG ? N/A B4XT64 38600265
    859706 8pmi:A (2.83) BS01 ATP ? N/A B4XT64 38600265
    859707 8pmi:A (2.83) BS02 MG ? N/A B4XT64 38600265
    859708 8pmi:B (2.83) BS01 ATP ? N/A B4XT64 38600265
    859709 8pmi:B (2.83) BS02 MG ? N/A B4XT64 38600265
    859710 8pmi:C (2.83) BS01 ATP ? N/A B4XT64 38600265
    859711 8pmi:C (2.83) BS02 MG ? N/A B4XT64 38600265
    859712 8pmi:D (2.83) BS01 ATP ? N/A B4XT64 38600265
    859713 8pmi:D (2.83) BS02 MG ? N/A B4XT64 38600265
    859714 8pmi:E (2.83) BS01 ATP ? N/A B4XT64 38600265
    859715 8pmi:E (2.83) BS02 MG ? N/A B4XT64 38600265
    859716 8pmi:F (2.83) BS01 ATP ? N/A B4XT64 38600265
    859717 8pmi:F (2.83) BS02 MG ? N/A B4XT64 38600265
    859718 8pmj:A (2.81) BS01 ATP 7.6.2.- GO:0005515 ... O95342 37949847
    859719 8pmj:A (2.81) BS02 CLR 7.6.2.- GO:0005515 ... O95342 37949847
    859720 8pmj:A (2.81) BS03 CLR 7.6.2.- GO:0005515 ... O95342 37949847
    859721 8pmj:A (2.81) BS04 ADP 7.6.2.- GO:0005515 ... O95342 37949847
    859722 8pmj:A (2.81) BS05 VO4 7.6.2.- GO:0005515 ... O95342 37949847
    859723 8pmj:A (2.81) BS06 MG 7.6.2.- GO:0005515 ... O95342 37949847
    859724 8pmj:A (2.81) BS07 MG 7.6.2.- GO:0005515 ... O95342 37949847
    859725 8pmk:A (2.43) BS01 BYN N/A GO:0005737 ... A0A193DUB4 N/A
    859726 8pmk:A (2.43) BS02 FE N/A GO:0005737 ... A0A193DUB4 N/A
    859727 8pmk:A (2.43) BS03 FE N/A GO:0005737 ... A0A193DUB4 N/A
    859728 8pmk:A (2.43) BS04 FE N/A GO:0005737 ... A0A193DUB4 N/A
    859729 8pmk:B (2.43) BS01 BYN N/A GO:0005737 ... A0A193DUB4 N/A
    859730 8pmk:B (2.43) BS02 FE N/A GO:0005737 ... A0A193DUB4 N/A
    859731 8pmk:B (2.43) BS03 FE N/A GO:0005737 ... A0A193DUB4 N/A
    859732 8pmk:B (2.43) BS04 FE N/A GO:0005737 ... A0A193DUB4 N/A
    859733 8pmk:C (2.43) BS01 BYN N/A GO:0005737 ... A0A193DUB4 N/A
    859734 8pmk:C (2.43) BS02 FE N/A GO:0005737 ... A0A193DUB4 N/A
    859735 8pmk:C (2.43) BS03 FE N/A GO:0005737 ... A0A193DUB4 N/A
    859736 8pmk:C (2.43) BS04 FE N/A GO:0005737 ... A0A193DUB4 N/A
    859737 8pmk:D (2.43) BS01 BYN N/A GO:0005737 ... A0A193DUB4 N/A
    859738 8pmk:D (2.43) BS02 FE N/A GO:0005737 ... A0A193DUB4 N/A
    859739 8pmk:D (2.43) BS03 FE N/A GO:0005737 ... A0A193DUB4 N/A
    859740 8pmk:D (2.43) BS04 FE N/A GO:0005737 ... A0A193DUB4 N/A
    859741 8pmk:E (2.43) BS01 BYN N/A GO:0005737 ... A0A193DUB4 N/A
    859742 8pmk:E (2.43) BS02 FE N/A GO:0005737 ... A0A193DUB4 N/A
    859743 8pmk:E (2.43) BS03 FE N/A GO:0005737 ... A0A193DUB4 N/A
    859744 8pmk:E (2.43) BS04 FE N/A GO:0005737 ... A0A193DUB4 N/A
    859745 8pmk:F (2.43) BS01 BYN N/A GO:0005737 ... A0A193DUB4 N/A
    859746 8pmk:F (2.43) BS02 FE N/A GO:0005737 ... A0A193DUB4 N/A
    859747 8pmk:F (2.43) BS03 FE N/A GO:0005737 ... A0A193DUB4 N/A
    859748 8pmk:F (2.43) BS04 FE N/A GO:0005737 ... A0A193DUB4 N/A
    859749 8pml:A (2.95) BS01 ATP ? N/A B4XT64 38600265
    859750 8pml:A (2.95) BS02 MG ? N/A B4XT64 38600265
    859751 8pml:B (2.95) BS01 ATP ? N/A B4XT64 38600265
    859752 8pml:B (2.95) BS02 MG ? N/A B4XT64 38600265
    859753 8pml:C (2.95) BS01 ATP ? N/A B4XT64 38600265
    859754 8pml:C (2.95) BS02 MG ? N/A B4XT64 38600265
    859755 8pml:D (2.95) BS01 ATP ? N/A B4XT64 38600265
    859756 8pml:D (2.95) BS02 MG ? N/A B4XT64 38600265
    859757 8pml:E (2.95) BS01 ATP ? N/A B4XT64 38600265
    859758 8pml:E (2.95) BS02 MG ? N/A B4XT64 38600265
    859759 8pml:F (2.95) BS01 ATP ? N/A B4XT64 38600265
    859760 8pml:F (2.95) BS02 MG ? N/A B4XT64 38600265
    859761 8pmm:A (1.75) BS01 ATP ? N/A B4XT64 38600265
    859762 8pmm:A (1.75) BS02 MG ? N/A B4XT64 38600265
    859763 8pmm:B (1.75) BS01 ATP ? N/A B4XT64 38600265
    859764 8pmm:B (1.75) BS02 MG ? N/A B4XT64 38600265
    859765 8pmm:C (1.75) BS01 ATP ? N/A B4XT64 38600265
    859766 8pmm:C (1.75) BS02 MG ? N/A B4XT64 38600265
    859767 8pmn:A (1.3) BS01 dna N/A GO:0000981 ... Q9NY43 39753777
    859768 8pmn:A (1.3) BS02 dna N/A GO:0000981 ... Q9NY43 39753777
    859769 8pmo:A (1.24) BS01 ZP2 ? GO:0001523 ... P02766 37837673
    859770 8pmo:B (1.24) BS01 ZP2 ? GO:0001523 ... P02766 37837673
    859771 8pmp:A (3.43) BS01 peptide ? GO:0000184 ... Q09161 38175753
    859772 8pmp:B (3.43) BS01 peptide ? GO:0000184 ... P52298 38175753
    859773 8pmp:B (3.43) BS02 MGT ? GO:0000184 ... P52298 38175753
    859774 8pmq:2 (3.53) BS01 ZN 2.3.2.27 GO:0004842 ... Q12508 38113892
    859775 8pmq:9 (3.53) BS01 ZN 2.3.2.27 GO:0004842 ... P40492 38113892
    859776 8pmr:B (1.94) BS01 MAN 3.2.2.-
    3.2.2.5
    GO:0050135 ... Q4WL81 37934975
    859777 8pms:D (2.4) BS01 FUC 3.2.2.-
    3.2.2.5
    GO:0050135 ... Q4WL81 37934975
    859778 8pmv:A (2.1) BS01 dna N/A GO:0000981 ... Q9NY43 39753777
    859779 8pmv:A (2.1) BS02 dna N/A GO:0000981 ... Q9NY43 39753777
    859780 8pmv:A (2.1) BS03 dna N/A GO:0000981 ... Q9NY43 39753777
    859781 8pmv:D (2.1) BS01 dna N/A GO:0000981 ... Q9NY43 39753777
    859782 8pmv:D (2.1) BS02 dna N/A GO:0000981 ... Q9NY43 39753777
    859783 8pmv:D (2.1) BS03 dna N/A GO:0000981 ... Q9NY43 39753777
    859784 8pmv:G (2.1) BS01 dna N/A GO:0000981 ... Q9NY43 39753777
    859785 8pmv:G (2.1) BS02 dna N/A GO:0000981 ... Q9NY43 39753777
    859786 8pmv:J (2.1) BS01 dna N/A GO:0000981 ... Q9NY43 39753777
    859787 8pmv:J (2.1) BS02 dna N/A GO:0000981 ... Q9NY43 39753777
    859788 8pn1:A (2.4) BS01 ATP ? N/A B4XT64 38600265
    859789 8pn1:A (2.4) BS02 MG ? N/A B4XT64 38600265
    859790 8pn1:B (2.4) BS01 ATP ? N/A B4XT64 38600265
    859791 8pn1:B (2.4) BS02 MG ? N/A B4XT64 38600265
    859792 8pn1:C (2.4) BS01 ATP ? N/A B4XT64 38600265
    859793 8pn1:C (2.4) BS02 MG ? N/A B4XT64 38600265
    859794 8pn1:D (2.4) BS01 ATP ? N/A B4XT64 38600265
    859795 8pn1:D (2.4) BS02 MG ? N/A B4XT64 38600265
    859796 8pn1:E (2.4) BS01 ATP ? N/A B4XT64 38600265
    859797 8pn1:E (2.4) BS02 MG ? N/A B4XT64 38600265
    859798 8pn1:F (2.4) BS01 ATP ? N/A B4XT64 38600265
    859799 8pn1:F (2.4) BS02 MG ? N/A B4XT64 38600265
    859800 8pn2:A (2.63) BS01 ATP ? GO:0005654 ... B4XT64 38600265

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).