SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    85801 2gh7:B (1.0) BS02 BTQ ? GO:0009374 ... P22629 16699183 MOAD: Kd~0.1pM
    85802 2gh9:A (1.95) BS01 GLC ? GO:0008643 ... Q72I44 19361522
    85803 2gh9:A (1.95) BS02 GLC ? GO:0008643 ... Q72I44 19361522
    85804 2gh9:A (1.95) BS03 GLC ? GO:0008643 ... Q72I44 19361522
    85805 2gha:A (1.6) BS01 GLC ? GO:0006511 ... Q9X0T1 N/A
    85806 2gha:A (1.6) BS02 GLC ? GO:0006511 ... Q9X0T1 N/A
    85807 2gha:A (1.6) BS03 GLC ? GO:0006511 ... Q9X0T1 N/A
    85808 2gha:B (1.6) BS01 GLC ? GO:0006511 ... Q9X0T1 N/A
    85809 2gha:B (1.6) BS02 GLC ? GO:0006511 ... Q9X0T1 N/A
    85810 2gha:B (1.6) BS03 GLC ? GO:0006511 ... Q9X0T1 N/A
    85811 2ghc:X (1.25) BS01 HEM 1.11.1.11 GO:0004601 ... Q43758 16762924
    85812 2ghd:X (1.4) BS01 HEM 1.11.1.11 GO:0004601 ... Q43758 16762924
    85813 2ghe:X (1.75) BS01 HEM 1.11.1.11 GO:0004601 ... Q43758 16762924
    85814 2ghf:A (-1.00) BS01 ZN ? N/A Q9UKY1 N/A
    85815 2ghf:A (-1.00) BS02 ZN ? N/A Q9UKY1 N/A
    85816 2ghg:A (3.5) BS01 A53 2.7.11.1 GO:0000077 ... O14757 16644221 BindingDB: Ki=126nM
    85817 2ghh:X (2.013) BS01 HEM 1.11.1.11 GO:0004601 ... Q43758 16762924
    85818 2ghh:X (2.013) BS02 NO 1.11.1.11 GO:0004601 ... Q43758 16762924
    85819 2ghk:X (1.999) BS01 HEM 1.11.1.11 GO:0004601 ... Q43758 16762924
    85820 2ghl:A (2.099) BS01 LIB 2.7.11.24 GO:0000077 ... P47811 16632356
    85821 2ghm:A (2.35) BS01 LIC 2.7.11.24 GO:0000077 ... P47811 16632356
    85822 2ghq:A (2.05) BS01 peptide 3.1.3.16 GO:0016791 ... Q9GZU7 17157258
    85823 2ghq:A (2.05) BS02 MG 3.1.3.16 GO:0016791 ... Q9GZU7 17157258
    85824 2ghq:B (2.05) BS01 peptide 3.1.3.16 GO:0016791 ... Q9GZU7 17157258
    85825 2ghq:B (2.05) BS02 MG 3.1.3.16 GO:0016791 ... Q9GZU7 17157258
    85826 2ght:A (1.8) BS01 peptide 3.1.3.16 GO:0016791 ... Q9GZU7 17157258
    85827 2ght:A (1.8) BS02 MG 3.1.3.16 GO:0016791 ... Q9GZU7 17157258
    85828 2ght:B (1.8) BS01 peptide 3.1.3.16 GO:0016791 ... Q9GZU7 17157258
    85829 2ght:B (1.8) BS02 MG 3.1.3.16 GO:0016791 ... Q9GZU7 17157258
    85830 2ghz:A (1.6) BS01 CU ? GO:0005507 ... P00282 16846224
    85831 2ghz:B (1.6) BS01 CU ? GO:0005507 ... P00282 16846224
    85832 2gi0:A (1.7) BS01 CU1 ? GO:0005507 ... P00282 16846224
    85833 2gi0:B (1.7) BS01 CU1 ? GO:0005507 ... P00282 16846224
    85834 2gic:A (2.92) BS01 rna ? GO:0003723 ... P03521 16778022
    85835 2gic:B (2.92) BS01 rna ? GO:0003723 ... P03521 16778022
    85836 2gic:C (2.92) BS01 rna ? GO:0003723 ... P03521 16778022
    85837 2gic:D (2.92) BS01 rna ? GO:0003723 ... P03521 16778022
    85838 2gic:E (2.92) BS01 rna ? GO:0003723 ... P03521 16778022
    85839 2gie:A (2.6) BS01 dna 3.1.21.4 GO:0003677 ... P17743 16675462
    85840 2gie:A (2.6) BS02 dna 3.1.21.4 GO:0003677 ... P17743 16675462
    85841 2gie:B (2.6) BS01 dna 3.1.21.4 GO:0003677 ... P17743 16675462
    85842 2gie:B (2.6) BS02 dna 3.1.21.4 GO:0003677 ... P17743 16675462
    85843 2gie:C (2.6) BS01 dna 3.1.21.4 GO:0003677 ... P17743 16675462
    85844 2gie:C (2.6) BS02 dna 3.1.21.4 GO:0003677 ... P17743 16675462
    85845 2gie:D (2.6) BS01 dna 3.1.21.4 GO:0003677 ... P17743 16675462
    85846 2gie:D (2.6) BS02 dna 3.1.21.4 GO:0003677 ... P17743 16675462
    85847 2gig:A (1.83) BS01 dna 3.1.21.4 GO:0003677 ... P17743 16675462
    85848 2gig:A (1.83) BS02 dna 3.1.21.4 GO:0003677 ... P17743 16675462
    85849 2gig:B (1.83) BS01 dna 3.1.21.4 GO:0003677 ... P17743 16675462
    85850 2gig:B (1.83) BS02 dna 3.1.21.4 GO:0003677 ... P17743 16675462
    85851 2gih:A (2.5) BS01 dna 3.1.21.4 GO:0003677 ... P17743 16675462
    85852 2gih:A (2.5) BS02 dna 3.1.21.4 GO:0003677 ... P17743 16675462
    85853 2gih:A (2.5) BS03 CA 3.1.21.4 GO:0003677 ... P17743 16675462
    85854 2gih:B (2.5) BS01 dna 3.1.21.4 GO:0003677 ... P17743 16675462
    85855 2gih:B (2.5) BS02 dna 3.1.21.4 GO:0003677 ... P17743 16675462
    85856 2gih:B (2.5) BS03 CA 3.1.21.4 GO:0003677 ... P17743 16675462
    85857 2gii:A (2.3) BS01 dna 3.1.21.4 GO:0003677 ... P17743 16675462
    85858 2gii:A (2.3) BS02 dna 3.1.21.4 GO:0003677 ... P17743 16675462
    85859 2gii:B (2.3) BS01 dna 3.1.21.4 GO:0003677 ... P17743 16675462
    85860 2gii:B (2.3) BS02 dna 3.1.21.4 GO:0003677 ... P17743 16675462
    85861 2gij:A (1.93) BS01 dna 3.1.21.4 GO:0003677 ... P17743 16675462
    85862 2gij:A (1.93) BS02 dna 3.1.21.4 GO:0003677 ... P17743 16675462
    85863 2gij:A (1.93) BS03 CA 3.1.21.4 GO:0003677 ... P17743 16675462
    85864 2gij:B (1.93) BS01 dna 3.1.21.4 GO:0003677 ... P17743 16675462
    85865 2gij:B (1.93) BS02 dna 3.1.21.4 GO:0003677 ... P17743 16675462
    85866 2gij:B (1.93) BS03 CA 3.1.21.4 GO:0003677 ... P17743 16675462
    85867 2gil:A (1.82) BS01 MG ? GO:0003924 ... P20340 16332443
    85868 2gil:A (1.82) BS02 GTP ? GO:0003924 ... P20340 16332443
    85869 2gil:B (1.82) BS01 MG ? GO:0003924 ... P20340 16332443
    85870 2gil:B (1.82) BS02 GTP ? GO:0003924 ... P20340 16332443
    85871 2gil:C (1.82) BS01 MG ? GO:0003924 ... P20340 16332443
    85872 2gil:C (1.82) BS02 GTP ? GO:0003924 ... P20340 16332443
    85873 2gil:D (1.82) BS01 MG ? GO:0003924 ... P20340 16332443
    85874 2gil:D (1.82) BS02 GTP ? GO:0003924 ... P20340 16332443
    85875 2gim:A (1.6) BS01 CU ? GO:0005507 ... P0C178 16929103
    85876 2gim:C (1.6) BS01 CU ? GO:0005507 ... P0C178 16929103
    85877 2giq:A (1.65) BS01 NN2 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... P26663 16731953 MOAD: ic50=131nM
    85878 2giq:B (1.65) BS01 NN2 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... P26663 16731953 MOAD: ic50=131nM
    85879 2gir:A (1.9) BS01 NN3 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... P26663 16731953 MOAD: ic50=140nM
    BindingDB: IC50=9nM
    85880 2gir:B (1.9) BS01 NN3 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... P26663 16731953 MOAD: ic50=140nM
    BindingDB: IC50=9nM
    85881 2git:A (1.7) BS01 peptide ? N/A P04439 16962135
    85882 2git:D (1.7) BS01 peptide ? N/A P04439 16962135
    85883 2giu:A (2.2) BS01 FBR ? GO:0003677 ... Q92731 16632357 MOAD: ic50=1.5nM
    BindingDB: IC50=1.8nM, EC50=4nM
    85884 2giv:A (1.94) BS01 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q9H7Z6 N/A
    85885 2giv:A (1.94) BS02 ACO 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q9H7Z6 N/A
    85886 2giw:A (-1.00) BS01 HEC ? GO:0005515 ... P00004 10499099
    85887 2gj2:A (2.35) BS01 CD ? N/A Q91LD0 16956937
    85888 2gj2:A (2.35) BS02 CD ? N/A Q91LD0 16956937
    85889 2gj2:B (2.35) BS01 CD ? N/A Q91LD0 16956937
    85890 2gj2:B (2.35) BS02 CD ? N/A Q91LD0 16956937
    85891 2gj2:C (2.35) BS01 CD ? N/A Q91LD0 16956937
    85892 2gj2:C (2.35) BS02 CD ? N/A Q91LD0 16956937
    85893 2gj2:D (2.35) BS01 CD ? N/A Q91LD0 16956937
    85894 2gj2:D (2.35) BS02 CD ? N/A Q91LD0 16956937
    85895 2gj3:A (1.04) BS01 FAD 2.7.13.3 GO:0006355 ... P30663 17319691
    85896 2gj3:B (1.04) BS01 FAD 2.7.13.3 GO:0006355 ... P30663 17319691
    85897 2gj4:A (1.6) BS01 PLR 2.4.1.1 GO:0004645 ... P00489 16945526
    85898 2gj4:A (1.6) BS02 2TH 2.4.1.1 GO:0004645 ... P00489 16945526 MOAD: ic50=319nM
    85899 2gj5:A (2.4) BS01 VD3 ? GO:0005515 ... P02754 18004750 MOAD: Kd=4.74nM
    85900 2gj5:A (2.4) BS02 VD3 ? GO:0005515 ... P02754 18004750 MOAD: Kd=4.74nM
    85901 2gj6:A (2.56) BS01 peptide ? N/A P04439 16962135
    85902 2gj6:D (2.56) BS01 peptide ? N/A P01848 16962135
    85903 2gj6:D (2.56) BS02 3IB ? N/A P01848 16962135
    85904 2gj6:E (2.56) BS01 peptide ? N/A P01850 16962135
    85905 2gj6:E (2.56) BS02 3IB ? N/A P01850 16962135
    85906 2gj7:A (5.0) BS01 BMA ? N/A P01857 16646632
    85907 2gj7:A (5.0) BS02 GAL ? N/A P01857 16646632
    85908 2gj7:B (5.0) BS01 BMA ? N/A P01857 16646632
    85909 2gj7:B (5.0) BS02 GAL ? N/A P01857 16646632
    85910 2gj8:A (1.7) BS01 ALF 3.6.-.- GO:0005525 ... P25522 16763562
    85911 2gj8:A (1.7) BS02 MG 3.6.-.- GO:0005525 ... P25522 16763562
    85912 2gj8:A (1.7) BS03 K 3.6.-.- GO:0005525 ... P25522 16763562
    85913 2gj8:A (1.7) BS04 GDP 3.6.-.- GO:0005525 ... P25522 16763562
    85914 2gj8:B (1.7) BS01 ALF 3.6.-.- GO:0005525 ... P25522 16763562
    85915 2gj8:B (1.7) BS02 MG 3.6.-.- GO:0005525 ... P25522 16763562
    85916 2gj8:B (1.7) BS03 K 3.6.-.- GO:0005525 ... P25522 16763562
    85917 2gj8:B (1.7) BS04 GDP 3.6.-.- GO:0005525 ... P25522 16763562
    85918 2gj8:C (1.7) BS01 ALF 3.6.-.- GO:0005525 ... P25522 16763562
    85919 2gj8:C (1.7) BS02 MG 3.6.-.- GO:0005525 ... P25522 16763562
    85920 2gj8:C (1.7) BS03 K 3.6.-.- GO:0005525 ... P25522 16763562
    85921 2gj8:C (1.7) BS04 GDP 3.6.-.- GO:0005525 ... P25522 16763562
    85922 2gj8:D (1.7) BS01 ALF 3.6.-.- GO:0005525 ... P25522 16763562
    85923 2gj8:D (1.7) BS02 MG 3.6.-.- GO:0005525 ... P25522 16763562
    85924 2gj8:D (1.7) BS03 K 3.6.-.- GO:0005525 ... P25522 16763562
    85925 2gj8:D (1.7) BS04 GDP 3.6.-.- GO:0005525 ... P25522 16763562
    85926 2gj9:A (2.0) BS01 ALF 3.6.-.- GO:0005525 ... P25522 16763562
    85927 2gj9:A (2.0) BS02 MG 3.6.-.- GO:0005525 ... P25522 16763562
    85928 2gj9:A (2.0) BS03 GDP 3.6.-.- GO:0005525 ... P25522 16763562
    85929 2gj9:B (2.0) BS01 ALF 3.6.-.- GO:0005525 ... P25522 16763562
    85930 2gj9:B (2.0) BS02 MG 3.6.-.- GO:0005525 ... P25522 16763562
    85931 2gj9:B (2.0) BS03 GDP 3.6.-.- GO:0005525 ... P25522 16763562
    85932 2gj9:C (2.0) BS01 ALF 3.6.-.- GO:0005525 ... P25522 16763562
    85933 2gj9:C (2.0) BS02 MG 3.6.-.- GO:0005525 ... P25522 16763562
    85934 2gj9:C (2.0) BS03 GDP 3.6.-.- GO:0005525 ... P25522 16763562
    85935 2gj9:D (2.0) BS01 ALF 3.6.-.- GO:0005525 ... P25522 16763562
    85936 2gj9:D (2.0) BS02 MG 3.6.-.- GO:0005525 ... P25522 16763562
    85937 2gj9:D (2.0) BS03 GDP 3.6.-.- GO:0005525 ... P25522 16763562
    85938 2gja:A (1.85) BS01 ALF 3.6.-.- GO:0005525 ... P25522 16763562
    85939 2gja:A (1.85) BS02 MG 3.6.-.- GO:0005525 ... P25522 16763562
    85940 2gja:A (1.85) BS03 GDP 3.6.-.- GO:0005525 ... P25522 16763562
    85941 2gja:B (1.85) BS01 ALF 3.6.-.- GO:0005525 ... P25522 16763562
    85942 2gja:B (1.85) BS02 MG 3.6.-.- GO:0005525 ... P25522 16763562
    85943 2gja:B (1.85) BS03 GDP 3.6.-.- GO:0005525 ... P25522 16763562
    85944 2gje:A (3.37) BS01 rna ? GO:0003677 ... Q952G2 16923390
    85945 2gje:D (3.37) BS01 rna ? GO:0003677 ... P90629 16923390
    85946 2gjk:A (2.6) BS01 ANP 3.6.4.12
    3.6.4.13
    GO:0003677 ... Q92900 17159905
    85947 2gjl:A (2.0) BS01 FMN 1.6.5.9 GO:0016491 ... Q9I4V0 16682407
    85948 2gjm:A (2.75) BS01 CA 1.11.1.7 GO:0004601 ... A5JUY8 N/A
    85949 2gjm:A (2.75) BS02 HEM 1.11.1.7 GO:0004601 ... A5JUY8 N/A
    85950 2gjn:A (2.3) BS01 FMN 1.6.5.9 GO:0016491 ... Q9I4V0 16682407
    85951 2gjn:A (2.3) BS02 NIS 1.6.5.9 GO:0016491 ... Q9I4V0 16682407
    85952 2gjp:A (1.9) BS01 BGC 3.2.1.98 GO:0004553 ... P19571 16946462
    85953 2gjp:A (1.9) BS02 GLC 3.2.1.98 GO:0004553 ... P19571 16946462
    85954 2gjp:A (1.9) BS03 DAF 3.2.1.98 GO:0004553 ... P19571 16946462
    85955 2gjp:A (1.9) BS04 GLC 3.2.1.98 GO:0004553 ... P19571 16946462
    85956 2gjp:A (1.9) BS05 GLC 3.2.1.98 GO:0004553 ... P19571 16946462
    85957 2gjp:A (1.9) BS06 GLC 3.2.1.98 GO:0004553 ... P19571 16946462
    85958 2gjp:A (1.9) BS07 DAF 3.2.1.98 GO:0004553 ... P19571 16946462
    85959 2gjp:A (1.9) BS08 GLC 3.2.1.98 GO:0004553 ... P19571 16946462
    85960 2gjp:A (1.9) BS09 GLC 3.2.1.98 GO:0004553 ... P19571 16946462
    85961 2gjp:A (1.9) BS10 GLC 3.2.1.98 GO:0004553 ... P19571 16946462
    85962 2gjp:A (1.9) BS11 CA 3.2.1.98 GO:0004553 ... P19571 16946462
    85963 2gjp:A (1.9) BS12 CA 3.2.1.98 GO:0004553 ... P19571 16946462
    85964 2gjp:A (1.9) BS13 CA 3.2.1.98 GO:0004553 ... P19571 16946462
    85965 2gjr:A (2.1) BS01 CA 3.2.1.98 GO:0004553 ... P19571 16946462
    85966 2gjr:A (2.1) BS02 CA 3.2.1.98 GO:0004553 ... P19571 16946462
    85967 2gjr:A (2.1) BS03 CA 3.2.1.98 GO:0004553 ... P19571 16946462
    85968 2gjs:A (1.9) BS01 GDP ? GO:0003924 ... P55042 N/A
    85969 2gjs:B (1.9) BS01 GDP ? GO:0003924 ... P55042 N/A
    85970 2gjw:A (2.85) BS01 rna 4.6.1.16 GO:0000213 ... O29362 16690865
    85971 2gjw:A (2.85) BS02 rna 4.6.1.16 GO:0000213 ... O29362 16690865
    85972 2gjw:B (2.85) BS01 rna 4.6.1.16 GO:0000213 ... O29362 16690865
    85973 2gjw:B (2.85) BS02 rna 4.6.1.16 GO:0000213 ... O29362 16690865
    85974 2gjw:B (2.85) BS03 rna 4.6.1.16 GO:0000213 ... O29362 16690865
    85975 2gjw:C (2.85) BS01 rna 4.6.1.16 GO:0000213 ... O29362 16690865
    85976 2gjw:C (2.85) BS02 rna 4.6.1.16 GO:0000213 ... O29362 16690865
    85977 2gjw:D (2.85) BS01 rna 4.6.1.16 GO:0000213 ... O29362 16690865
    85978 2gjw:D (2.85) BS02 rna 4.6.1.16 GO:0000213 ... O29362 16690865
    85979 2gjw:D (2.85) BS03 rna 4.6.1.16 GO:0000213 ... O29362 16690865
    85980 2gjz:A (2.65) BS01 ZN ? GO:0005576 ... Q65ZC0 17226987
    85981 2gjz:B (2.65) BS01 ZN N/A N/A P01867 17226987
    85982 2gjz:H (2.65) BS01 ZN N/A N/A P01867 17226987
    85983 2gjz:L (2.65) BS01 ZN ? GO:0005576 ... Q65ZC0 17226987
    85984 2gk1:I (3.25) BS01 NGT 3.2.1.52 GO:0004553 ... P06865 16698036 BindingDB: Ki=270nM
    85985 2gk1:J (3.25) BS01 NGT 3.2.1.52 GO:0004553 ... P06865 16698036 BindingDB: Ki=270nM
    85986 2gk1:K (3.25) BS01 NGT 3.2.1.52 GO:0004553 ... P06865 16698036 BindingDB: Ki=270nM
    85987 2gk1:L (3.25) BS01 NGT 3.2.1.52 GO:0004553 ... P06865 16698036 BindingDB: Ki=270nM
    85988 2gk1:N (3.25) BS01 NGT 3.2.1.52 GO:0004553 ... P07686 16698036 BindingDB: Ki=190nM
    85989 2gk1:O (3.25) BS01 NGT 3.2.1.52 GO:0004553 ... P07686 16698036 BindingDB: Ki=190nM
    85990 2gk1:P (3.25) BS01 NGT 3.2.1.52 GO:0004553 ... P07686 16698036 BindingDB: Ki=190nM
    85991 2gk1:R (3.25) BS01 NGT 3.2.1.52 GO:0004553 ... P07686 16698036 BindingDB: Ki=190nM
    85992 2gk1:T (3.25) BS01 NGT 3.2.1.52 GO:0004553 ... P07686 16698036 BindingDB: Ki=190nM
    85993 2gk6:A (2.4) BS01 PO4 3.6.4.12
    3.6.4.13
    GO:0003677 ... Q92900 17159905
    85994 2gk6:A (2.4) BS02 ADP 3.6.4.12
    3.6.4.13
    GO:0003677 ... Q92900 17159905
    85995 2gk6:B (2.4) BS01 PO4 3.6.4.12
    3.6.4.13
    GO:0003677 ... Q92900 17159905
    85996 2gk6:B (2.4) BS02 ADP 3.6.4.12
    3.6.4.13
    GO:0003677 ... Q92900 17159905
    85997 2gk7:A (2.8) BS01 PO4 3.6.4.12
    3.6.4.13
    GO:0003677 ... Q92900 17159905
    85998 2gkd:A (-1.00) BS01 dna ? N/A Q8KNF0 17168523
    85999 2gkd:A (-1.00) BS02 dna ? N/A Q8KNF0 17168523
    86000 2gke:A (1.35) BS01 ZDP 5.1.1.7 GO:0005737 ... P44859 16723397

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).