SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    859801 8qbt:w (2.2) BS01 rna ? GO:0000028 ... P0ADZ4 38503735
    859802 8qbt:w (2.2) BS02 rna ? GO:0000028 ... P0ADZ4 38503735
    859803 8qbt:y (2.2) BS01 rna ? GO:0000028 ... P0AG63 38503735
    859804 8qbt:z (2.2) BS01 rna ? GO:0002181 ... P0A7T7 38503735
    859805 8qbu:A (1.09) BS01 42J 2.7.11.1 GO:0000785 ... P19784 N/A
    859806 8qbu:A (1.09) BS02 3NG 2.7.11.1 GO:0000785 ... P19784 N/A
    859807 8qby:B (2.3) BS01 SF4 N/A GO:0005506 ... A1B497 N/A
    859808 8qby:D (2.3) BS01 CA N/A GO:0005886 ... A1B495 N/A
    859809 8qby:D (2.3) BS02 SF4 N/A GO:0005886 ... A1B495 N/A
    859810 8qby:E (2.3) BS01 FES N/A GO:0003954 ... A1B494 N/A
    859811 8qby:F (2.3) BS01 FMN N/A GO:0008137 ... A1B491 N/A
    859812 8qby:F (2.3) BS02 SF4 N/A GO:0008137 ... A1B491 N/A
    859813 8qby:G (2.3) BS01 SF4 N/A GO:0008137 ... A1B489 N/A
    859814 8qby:G (2.3) BS02 SF4 N/A GO:0008137 ... A1B489 N/A
    859815 8qby:G (2.3) BS03 FES N/A GO:0008137 ... A1B489 N/A
    859816 8qby:H (2.3) BS01 P5S N/A GO:0003954 ... A1B487 N/A
    859817 8qby:H (2.3) BS02 U10 N/A GO:0003954 ... A1B487 N/A
    859818 8qby:I (2.3) BS01 SF4 N/A GO:0003954 ... A1B486 N/A
    859819 8qby:I (2.3) BS02 SF4 N/A GO:0003954 ... A1B486 N/A
    859820 8qby:I (2.3) BS03 P5S N/A GO:0003954 ... A1B486 N/A
    859821 8qby:L (2.3) BS01 P5S N/A GO:0003954 ... A1B481 N/A
    859822 8qby:M (2.3) BS01 CA N/A GO:0003954 ... A1B480 N/A
    859823 8qby:N (2.3) BS01 CA N/A GO:0005886 ... A1B479 N/A
    859824 8qby:R (2.3) BS01 ZN N/A N/A A1B357 N/A
    859825 8qby:q (2.3) BS01 P5S N/A GO:0006979 ... A1B1H8 N/A
    859826 8qbz:A (1.9) BS01 HEC N/A GO:0016491 ... Q8EG34 39158169
    859827 8qbz:A (1.9) BS02 HEC N/A GO:0016491 ... Q8EG34 39158169
    859828 8qbz:A (1.9) BS03 HEC N/A GO:0016491 ... Q8EG34 39158169
    859829 8qbz:A (1.9) BS04 HEC N/A GO:0016491 ... Q8EG34 39158169
    859830 8qbz:A (1.9) BS05 HEC N/A GO:0016491 ... Q8EG34 39158169
    859831 8qbz:A (1.9) BS06 HEC N/A GO:0016491 ... Q8EG34 39158169
    859832 8qbz:A (1.9) BS07 HEC N/A GO:0016491 ... Q8EG34 39158169
    859833 8qbz:A (1.9) BS08 HEC N/A GO:0016491 ... Q8EG34 39158169
    859834 8qbz:A (1.9) BS09 HEC N/A GO:0016491 ... Q8EG34 39158169
    859835 8qbz:A (1.9) BS10 HEC N/A GO:0016491 ... Q8EG34 39158169
    859836 8qbz:A (1.9) BS11 CA N/A GO:0016491 ... Q8EG34 39158169
    859837 8qbz:A (1.9) BS12 CA N/A GO:0016491 ... Q8EG34 39158169
    859838 8qbz:A (1.9) BS13 CA N/A GO:0016491 ... Q8EG34 39158169
    859839 8qbz:A (1.9) BS14 CA N/A GO:0016491 ... Q8EG34 39158169
    859840 8qc0:A (2.02) BS01 RIB ? GO:0009159 ... K9TVX3 38449528
    859841 8qc0:B (2.02) BS01 RIB ? GO:0009159 ... K9TVX3 38449528
    859842 8qc0:C (2.02) BS01 RIB ? GO:0009159 ... K9TVX3 38449528
    859843 8qc0:D (2.02) BS01 RIB ? GO:0009159 ... K9TVX3 38449528
    859844 8qc1:L (2.5) BS01 P5S N/A GO:0003954 ... A1B481 N/A
    859845 8qc1:M (2.5) BS01 CA N/A GO:0003954 ... A1B480 N/A
    859846 8qc2:A (2.3) BS01 NAD N/A GO:0000166 ... N/A 38100472
    859847 8qc2:A (2.3) BS02 R7R N/A GO:0000166 ... N/A 38100472
    859848 8qc2:B (2.3) BS01 NAD N/A GO:0000166 ... N/A 38100472
    859849 8qc2:B (2.3) BS02 R7R N/A GO:0000166 ... N/A 38100472
    859850 8qc2:C (2.3) BS01 NAD N/A GO:0000166 ... N/A 38100472
    859851 8qc2:C (2.3) BS02 R7R N/A GO:0000166 ... N/A 38100472
    859852 8qc2:D (2.3) BS01 NAD N/A GO:0000166 ... N/A 38100472
    859853 8qc2:D (2.3) BS02 R7R N/A GO:0000166 ... N/A 38100472
    859854 8qc3:A (2.65) BS01 NAD ? GO:0000166 ... A0A1C9WRL0 38100472
    859855 8qc3:B (2.65) BS01 NAD ? GO:0000166 ... A0A1C9WRL0 38100472
    859856 8qc4:A (1.578) BS01 TXR 4.2.99.21
    5.4.4.2
    5.4.99.5
    GO:0000162 ... P9WFX1 38004425
    859857 8qc4:B (1.578) BS01 TXR 4.2.99.21
    5.4.4.2
    5.4.99.5
    GO:0000162 ... P9WFX1 38004425
    859858 8qc5:A (1.95) BS01 NAD ? GO:0000166 ... A0A1C9WRL0 38100472
    859859 8qc5:B (1.95) BS01 NAD ? GO:0000166 ... A0A1C9WRL0 38100472
    859860 8qc6:A (2.4) BS01 NAD ? GO:0000166 ... A0A1C9WRL0 38100472
    859861 8qc6:A (2.4) BS02 R7R ? GO:0000166 ... A0A1C9WRL0 38100472
    859862 8qc6:B (2.4) BS01 NAD ? GO:0000166 ... A0A1C9WRL0 38100472
    859863 8qc6:B (2.4) BS02 R7R ? GO:0000166 ... A0A1C9WRL0 38100472
    859864 8qc7:A (2.03) BS01 CDM N/A GO:0005515 ... P62615 N/A
    859865 8qc7:A (2.03) BS02 ADP N/A GO:0005515 ... P62615 N/A
    859866 8qc7:B (2.03) BS01 CDM N/A GO:0005515 ... P62615 N/A
    859867 8qc7:B (2.03) BS02 ADP N/A GO:0005515 ... P62615 N/A
    859868 8qc8:A (2.35) BS01 NAD N/A GO:0000166 ... N/A 38100472
    859869 8qc8:B (2.35) BS01 NAD N/A GO:0000166 ... N/A 38100472
    859870 8qc8:C (2.35) BS01 NAD N/A GO:0000166 ... N/A 38100472
    859871 8qc8:D (2.35) BS01 NAD N/A GO:0000166 ... N/A 38100472
    859872 8qc9:A (2.0) BS01 HEC N/A GO:0016491 ... Q8EG34 39158169
    859873 8qc9:A (2.0) BS02 HEC N/A GO:0016491 ... Q8EG34 39158169
    859874 8qc9:A (2.0) BS03 HEC N/A GO:0016491 ... Q8EG34 39158169
    859875 8qc9:A (2.0) BS04 HEC N/A GO:0016491 ... Q8EG34 39158169
    859876 8qc9:A (2.0) BS05 HEC N/A GO:0016491 ... Q8EG34 39158169
    859877 8qc9:A (2.0) BS06 HEC N/A GO:0016491 ... Q8EG34 39158169
    859878 8qc9:A (2.0) BS07 HEC N/A GO:0016491 ... Q8EG34 39158169
    859879 8qc9:A (2.0) BS08 HEC N/A GO:0016491 ... Q8EG34 39158169
    859880 8qc9:A (2.0) BS09 HEC N/A GO:0016491 ... Q8EG34 39158169
    859881 8qc9:A (2.0) BS10 HEC N/A GO:0016491 ... Q8EG34 39158169
    859882 8qc9:A (2.0) BS11 CA N/A GO:0016491 ... Q8EG34 39158169
    859883 8qc9:A (2.0) BS12 CA N/A GO:0016491 ... Q8EG34 39158169
    859884 8qc9:A (2.0) BS13 CA N/A GO:0016491 ... Q8EG34 39158169
    859885 8qc9:A (2.0) BS14 CA N/A GO:0016491 ... Q8EG34 39158169
    859886 8qca:A (2.84) BS01 rna 3.6.4.13 GO:0000956 ... P35207 37879335
    859887 8qca:B (2.84) BS01 peptide ? GO:0000956 ... P17883 37879335
    859888 8qcc:A (1.9) BS01 ADP N/A GO:0005515 ... P62615 N/A
    859889 8qcc:A (1.9) BS02 UKO N/A GO:0005515 ... P62615 N/A
    859890 8qcc:A (1.9) BS03 MG N/A GO:0005515 ... P62615 N/A
    859891 8qcc:B (1.9) BS01 ADP N/A GO:0005515 ... P62615 N/A
    859892 8qcc:B (1.9) BS02 UKO N/A GO:0005515 ... P62615 N/A
    859893 8qcc:B (1.9) BS03 MG N/A GO:0005515 ... P62615 N/A
    859894 8qcc:B (1.9) BS04 MG N/A GO:0005515 ... P62615 N/A
    859895 8qcd:A (1.03) BS01 TBS 2.7.11.1 GO:0000785 ... P19784 N/A
    859896 8qcf:C (2.55) BS01 rna ? GO:0000176 ... P46948 37879335
    859897 8qcf:I (2.55) BS01 rna ? GO:0000176 ... P38792 37879335
    859898 8qcf:K (2.55) BS01 rna 3.1.13.-
    3.1.26.-
    GO:0000049 ... Q08162 37879335
    859899 8qcf:M (2.55) BS01 rna 3.6.4.13 GO:0003676 ... P35207 37879335
    859900 8qcf:M (2.55) BS02 ATP 3.6.4.13 GO:0003676 ... P35207 37879335
    859901 8qcg:A (1.04) BS01 ANP 2.7.11.1 GO:0000785 ... P19784 N/A
    859902 8qcg:A (1.04) BS02 MG 2.7.11.1 GO:0000785 ... P19784 N/A
    859903 8qcg:B (1.04) BS01 ANP 2.7.11.1 GO:0000785 ... P19784 N/A
    859904 8qcg:B (1.04) BS02 MG 2.7.11.1 GO:0000785 ... P19784 N/A
    859905 8qch:A (2.442) BS01 EIF N/A GO:0004000 ... Q6DHV7 39190717
    859906 8qch:A (2.442) BS02 ZN N/A GO:0004000 ... Q6DHV7 39190717
    859907 8qch:B (2.442) BS01 EIF N/A GO:0004000 ... Q6DHV7 39190717
    859908 8qch:B (2.442) BS02 ZN N/A GO:0004000 ... Q6DHV7 39190717
    859909 8qch:C (2.442) BS01 EIF N/A GO:0004000 ... Q6DHV7 39190717
    859910 8qch:C (2.442) BS02 ZN N/A GO:0004000 ... Q6DHV7 39190717
    859911 8qch:D (2.442) BS01 EIF N/A GO:0004000 ... Q6DHV7 39190717
    859912 8qch:D (2.442) BS02 ZN N/A GO:0004000 ... Q6DHV7 39190717
    859913 8qch:E (2.442) BS01 EIF N/A GO:0004000 ... Q6DHV7 39190717
    859914 8qch:E (2.442) BS02 ZN N/A GO:0004000 ... Q6DHV7 39190717
    859915 8qch:F (2.442) BS01 EIF N/A GO:0004000 ... Q6DHV7 39190717
    859916 8qch:F (2.442) BS02 ZN N/A GO:0004000 ... Q6DHV7 39190717
    859917 8qch:G (2.442) BS01 EIF N/A GO:0004000 ... Q6DHV7 39190717
    859918 8qch:G (2.442) BS02 ZN N/A GO:0004000 ... Q6DHV7 39190717
    859919 8qch:H (2.442) BS01 EIF N/A GO:0004000 ... Q6DHV7 39190717
    859920 8qch:H (2.442) BS02 ZN N/A GO:0004000 ... Q6DHV7 39190717
    859921 8qci:B (2.2) BS01 peptide ? N/A Q9Y6R7 38380729
    859922 8qci:B (2.2) BS02 CA ? N/A Q9Y6R7 38380729
    859923 8qcj:A (2.9) BS01 FAD 1.8.1.15 GO:0000166 ... C0ZY75 38372589
    859924 8qcj:B (2.9) BS01 FAD 1.8.1.15 GO:0000166 ... C0ZY75 38372589
    859925 8qcl:A (1.84) BS01 GCU ? GO:0052689 ... A6KWT9 38179933
    859926 8qcl:B (1.84) BS01 GCU ? GO:0052689 ... A6KWT9 38179933
    859927 8qcm:A (2.39) BS01 V0U N/A GO:0005515 ... Q9UNQ0 39445888
    859928 8qcm:A (2.39) BS02 CLR N/A GO:0005515 ... Q9UNQ0 39445888
    859929 8qcm:A (2.39) BS03 CLR N/A GO:0005515 ... Q9UNQ0 39445888
    859930 8qcm:A (2.39) BS04 V0U N/A GO:0005515 ... Q9UNQ0 39445888
    859931 8qcm:B (2.39) BS01 V0U N/A GO:0005515 ... Q9UNQ0 39445888
    859932 8qcm:B (2.39) BS02 V0U N/A GO:0005515 ... Q9UNQ0 39445888
    859933 8qcm:B (2.39) BS03 CLR N/A GO:0005515 ... Q9UNQ0 39445888
    859934 8qcm:B (2.39) BS04 CLR N/A GO:0005515 ... Q9UNQ0 39445888
    859935 8qcn:A (1.86) BS01 ADP N/A GO:0005515 ... P62615 N/A
    859936 8qcn:A (1.86) BS02 QB9 N/A GO:0005515 ... P62615 N/A
    859937 8qcn:B (1.86) BS01 ADP N/A GO:0005515 ... P62615 N/A
    859938 8qcn:B (1.86) BS02 QB9 N/A GO:0005515 ... P62615 N/A
    859939 8qco:A (1.55) BS01 ADP N/A GO:0005515 ... P62615 N/A
    859940 8qco:A (1.55) BS02 QBI N/A GO:0005515 ... P62615 N/A
    859941 8qco:B (1.55) BS01 ADP N/A GO:0005515 ... P62615 N/A
    859942 8qco:B (1.55) BS02 QBI N/A GO:0005515 ... P62615 N/A
    859943 8qcq:0 (2.3) BS01 rna ? GO:0003735 ... O34687 38503735
    859944 8qcq:0 (2.3) BS02 ZN ? GO:0003735 ... O34687 38503735
    859945 8qcq:1 (2.3) BS01 rna ? GO:0003735 ... P56849 38503735
    859946 8qcq:1 (2.3) BS02 ZN ? GO:0003735 ... P56849 38503735
    859947 8qcq:2 (2.3) BS01 rna ? GO:0003735 ... P05647 38503735
    859948 8qcq:3 (2.3) BS01 rna ? GO:0003735 ... P55874 38503735
    859949 8qcq:4 (2.3) BS01 rna ? GO:0003735 ... P20278 38503735
    859950 8qcq:4 (2.3) BS02 ZN ? GO:0003735 ... P20278 38503735
    859951 8qcq:6 (2.3) BS01 rna ? GO:0003735 ... Q03223 38503735
    859952 8qcq:6 (2.3) BS02 ZN ? GO:0003735 ... Q03223 38503735
    859953 8qcq:C (2.3) BS01 rna ? GO:0002181 ... P42919 38503735
    859954 8qcq:D (2.3) BS01 rna ? GO:0003735 ... P42920 38503735
    859955 8qcq:E (2.3) BS01 rna ? GO:0003735 ... P42921 38503735
    859956 8qcq:F (2.3) BS01 rna ? GO:0000049 ... P12877 38503735
    859957 8qcq:F (2.3) BS02 rna ? GO:0000049 ... P12877 38503735
    859958 8qcq:F (2.3) BS03 rna ? GO:0000049 ... P12877 38503735
    859959 8qcq:G (2.3) BS01 rna ? GO:0002181 ... P46898 38503735
    859960 8qcq:J (2.3) BS01 rna ? GO:0003729 ... P70974 38503735
    859961 8qcq:K (2.3) BS01 rna ? GO:0003735 ... P12875 38503735
    859962 8qcq:K (2.3) BS02 rna ? GO:0003735 ... P12875 38503735
    859963 8qcq:L (2.3) BS01 rna ? GO:0003735 ... P19946 38503735
    859964 8qcq:M (2.3) BS01 rna ? GO:0000049 ... P14577 38503735
    859965 8qcq:M (2.3) BS02 rna ? GO:0000049 ... P14577 38503735
    859966 8qcq:M (2.3) BS03 rna ? GO:0000049 ... P14577 38503735
    859967 8qcq:N (2.3) BS01 rna ? GO:0003735 ... P20277 38503735
    859968 8qcq:O (2.3) BS01 rna ? GO:0003735 ... P46899 38503735
    859969 8qcq:O (2.3) BS02 rna ? GO:0003735 ... P46899 38503735
    859970 8qcq:P (2.3) BS01 rna ? GO:0003735 ... O31742 38503735
    859971 8qcq:P (2.3) BS02 rna ? GO:0003735 ... O31742 38503735
    859972 8qcq:Q (2.3) BS01 rna ? GO:0000027 ... P55873 38503735
    859973 8qcq:R (2.3) BS01 rna ? GO:0003723 ... P26908 38503735
    859974 8qcq:S (2.3) BS01 rna ? GO:0003735 ... P42060 38503735
    859975 8qcq:T (2.3) BS01 rna ? GO:0003735 ... P42924 38503735
    859976 8qcq:U (2.3) BS01 rna ? GO:0003677 ... P0CI78 38503735
    859977 8qcq:W (2.3) BS01 rna ? GO:0003735 ... P05657 38503735
    859978 8qcq:W (2.3) BS02 rna ? GO:0003735 ... P05657 38503735
    859979 8qcq:W (2.3) BS03 rna ? GO:0003735 ... P05657 38503735
    859980 8qcq:X (2.3) BS01 rna ? GO:0003735 ... P37807 38503735
    859981 8qcq:Y (2.3) BS01 rna ? GO:0003735 ... P12873 38503735
    859982 8qcq:Z (2.3) BS01 rna ? GO:0003735 ... P19947 38503735
    859983 8qcq:Z (2.3) BS02 rna ? GO:0003735 ... P19947 38503735
    859984 8qcq:c (2.3) BS01 rna ? GO:0003676 ... P21465 38503735
    859985 8qcq:e (2.3) BS01 rna ? GO:0003723 ... P21467 38503735
    859986 8qcq:f (2.3) BS01 rna ? GO:0003735 ... P21468 38503735
    859987 8qcq:g (2.3) BS01 rna ? GO:0000028 ... P21469 38503735
    859988 8qcq:h (2.3) BS01 rna ? GO:0003735 ... P12879 38503735
    859989 8qcq:i (2.3) BS01 rna ? GO:0003723 ... P21470 38503735
    859990 8qcq:i (2.3) BS02 rna ? GO:0003723 ... P21470 38503735
    859991 8qcq:j (2.3) BS01 rna ? GO:0000049 ... P21471 38503735
    859992 8qcq:k (2.3) BS01 rna ? GO:0003735 ... P04969 38503735
    859993 8qcq:l (2.3) BS01 rna ? GO:0000049 ... P21472 38503735
    859994 8qcq:m (2.3) BS01 rna ? GO:0000049 ... P20282 38503735
    859995 8qcq:m (2.3) BS02 rna ? GO:0000049 ... P20282 38503735
    859996 8qcq:n (2.3) BS01 rna ? GO:0003735 ... P12878 38503735
    859997 8qcq:n (2.3) BS02 ZN ? GO:0003735 ... P12878 38503735
    859998 8qcq:o (2.3) BS01 rna ? GO:0003735 ... P21473 38503735
    859999 8qcq:o (2.3) BS02 rna ? GO:0003735 ... P21473 38503735
    860000 8qcq:q (2.3) BS01 rna ? GO:0003735 ... P12874 38503735

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).