SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    860401 8pp5:F (2.0) BS01 FE 1.16.3.1 GO:0004322 ... P02794 38059469
    860402 8pp6:A (3.18) BS01 dna ? GO:0000785 ... P02299 38528151
    860403 8pp6:A (3.18) BS02 dna ? GO:0000785 ... P02299 38528151
    860404 8pp6:B (3.18) BS01 dna ? GO:0000228 ... P84040 38528151
    860405 8pp6:B (3.18) BS02 dna ? GO:0000228 ... P84040 38528151
    860406 8pp6:C (3.18) BS01 dna ? GO:0000786 ... P84051 38528151
    860407 8pp6:C (3.18) BS02 dna ? GO:0000786 ... P84051 38528151
    860408 8pp6:D (3.18) BS01 dna ? GO:0000786 ... P02283 38528151
    860409 8pp6:D (3.18) BS02 dna ? GO:0000786 ... P02283 38528151
    860410 8pp6:E (3.18) BS01 dna ? GO:0000785 ... P02299 38528151
    860411 8pp6:E (3.18) BS02 dna ? GO:0000785 ... P02299 38528151
    860412 8pp6:F (3.18) BS01 dna ? GO:0000228 ... P84040 38528151
    860413 8pp6:F (3.18) BS02 dna ? GO:0000228 ... P84040 38528151
    860414 8pp6:G (3.18) BS01 dna ? GO:0000786 ... P84051 38528151
    860415 8pp6:G (3.18) BS02 dna ? GO:0000786 ... P84051 38528151
    860416 8pp6:H (3.18) BS01 dna ? GO:0000786 ... P02283 38528151
    860417 8pp6:H (3.18) BS02 dna ? GO:0000786 ... P02283 38528151
    860418 8pp6:K (3.18) BS01 ZN ? GO:0000785 ... Q8N488 38528151
    860419 8pp7:A (2.91) BS01 dna ? GO:0000785 ... P02299 38528151
    860420 8pp7:A (2.91) BS02 dna ? GO:0000785 ... P02299 38528151
    860421 8pp7:B (2.91) BS01 dna ? GO:0000228 ... P84040 38528151
    860422 8pp7:B (2.91) BS02 dna ? GO:0000228 ... P84040 38528151
    860423 8pp7:C (2.91) BS01 dna ? GO:0000786 ... P84051 38528151
    860424 8pp7:C (2.91) BS02 dna ? GO:0000786 ... P84051 38528151
    860425 8pp7:D (2.91) BS01 dna ? GO:0000786 ... P02283 38528151
    860426 8pp7:D (2.91) BS02 dna ? GO:0000786 ... P02283 38528151
    860427 8pp7:E (2.91) BS01 dna ? GO:0000785 ... P02299 38528151
    860428 8pp7:E (2.91) BS02 dna ? GO:0000785 ... P02299 38528151
    860429 8pp7:F (2.91) BS01 dna ? GO:0000228 ... P84040 38528151
    860430 8pp7:G (2.91) BS01 dna ? GO:0000786 ... P84051 38528151
    860431 8pp7:G (2.91) BS02 dna ? GO:0000786 ... P84051 38528151
    860432 8pp7:H (2.91) BS01 dna ? GO:0000786 ... P02283 38528151
    860433 8pp7:H (2.91) BS02 dna ? GO:0000786 ... P02283 38528151
    860434 8pp7:K (2.91) BS01 ZN ? GO:0000122 ... P35226 38528151
    860435 8pp7:K (2.91) BS02 ZN ? GO:0000122 ... P35226 38528151
    860436 8pp7:L (2.91) BS01 ZN 2.3.2.27 GO:0000122 ... Q99496 38528151
    860437 8pp7:L (2.91) BS02 ZN 2.3.2.27 GO:0000122 ... Q99496 38528151
    860438 8pp7:M (2.91) BS01 ZN ? GO:0000122 ... P35226 38528151
    860439 8pp7:M (2.91) BS02 ZN ? GO:0000122 ... P35226 38528151
    860440 8pp7:N (2.91) BS01 ZN 2.3.2.27 GO:0000122 ... Q99496 38528151
    860441 8pp7:N (2.91) BS02 ZN 2.3.2.27 GO:0000122 ... Q99496 38528151
    860442 8pp8:A (1.59) BS01 ANP 2.7.1.127 GO:0016301 ... P23677 38374076
    860443 8pp8:A (1.59) BS02 3IA 2.7.1.127 GO:0016301 ... P23677 38374076
    860444 8pp8:B (1.59) BS01 3IA 2.7.1.127 GO:0016301 ... P23677 38374076
    860445 8pp8:B (1.59) BS02 ANP 2.7.1.127 GO:0016301 ... P23677 38374076
    860446 8pp9:A (1.73) BS01 4IM 2.7.1.127 GO:0016301 ... P23677 38374076
    860447 8pp9:A (1.73) BS02 ADP 2.7.1.127 GO:0016301 ... P23677 38374076
    860448 8pp9:B (1.73) BS01 ADP 2.7.1.127 GO:0016301 ... P23677 38374076
    860449 8pp9:B (1.73) BS02 4IM 2.7.1.127 GO:0016301 ... P23677 38374076
    860450 8ppa:A (1.73) BS01 ANP 2.7.1.127 GO:0016301 ... P23677 38374076
    860451 8ppa:A (1.73) BS02 06G 2.7.1.127 GO:0016301 ... P23677 38374076
    860452 8ppa:B (1.73) BS01 ANP 2.7.1.127 GO:0016301 ... P23677 38374076
    860453 8ppa:B (1.73) BS02 06G 2.7.1.127 GO:0016301 ... P23677 38374076
    860454 8ppb:A (1.8) BS01 3I2 2.7.1.127 GO:0016301 ... P23677 38374076
    860455 8ppb:A (1.8) BS02 ATP 2.7.1.127 GO:0016301 ... P23677 38374076
    860456 8ppb:B (1.8) BS01 3I2 2.7.1.127 GO:0016301 ... P23677 38374076
    860457 8ppb:B (1.8) BS02 ATP 2.7.1.127 GO:0016301 ... P23677 38374076
    860458 8ppc:A (1.92) BS01 2KM 2.7.1.127 GO:0016301 ... P23677 38374076
    860459 8ppc:A (1.92) BS02 ATP 2.7.1.127 GO:0016301 ... P23677 38374076
    860460 8ppc:B (1.92) BS01 2KM 2.7.1.127 GO:0016301 ... P23677 38374076
    860461 8ppc:B (1.92) BS02 ATP 2.7.1.127 GO:0016301 ... P23677 38374076
    860462 8ppd:A (1.77) BS01 ATP 2.7.1.127 GO:0016301 ... P23677 38374076
    860463 8ppd:A (1.77) BS02 75I 2.7.1.127 GO:0016301 ... P23677 38374076
    860464 8ppd:B (1.77) BS01 75I 2.7.1.127 GO:0016301 ... P23677 38374076
    860465 8ppd:B (1.77) BS02 ATP 2.7.1.127 GO:0016301 ... P23677 38374076
    860466 8ppe:A (1.59) BS01 ADP 2.7.1.127 GO:0016301 ... P23677 38374076
    860467 8ppe:A (1.59) BS02 7I8 2.7.1.127 GO:0016301 ... P23677 38374076
    860468 8ppe:B (1.59) BS01 ADP 2.7.1.127 GO:0016301 ... P23677 38374076
    860469 8ppe:B (1.59) BS02 7I8 2.7.1.127 GO:0016301 ... P23677 38374076
    860470 8ppf:A (1.85) BS01 ANP 2.7.1.127 GO:0016301 ... P23677 38374076
    860471 8ppf:A (1.85) BS02 6II 2.7.1.127 GO:0016301 ... P23677 38374076
    860472 8ppf:B (1.85) BS01 ANP 2.7.1.127 GO:0016301 ... P23677 38374076
    860473 8ppf:B (1.85) BS02 6II 2.7.1.127 GO:0016301 ... P23677 38374076
    860474 8ppg:A (1.75) BS01 ADP 2.7.1.127 GO:0016301 ... P23677 38374076
    860475 8ppg:A (1.75) BS02 46I 2.7.1.127 GO:0016301 ... P23677 38374076
    860476 8ppg:B (1.75) BS01 ADP 2.7.1.127 GO:0016301 ... P23677 38374076
    860477 8ppg:B (1.75) BS02 46I 2.7.1.127 GO:0016301 ... P23677 38374076
    860478 8pph:A (1.7) BS01 ATP 2.7.1.127 GO:0016301 ... P23677 38374076
    860479 8pph:A (1.7) BS02 5AI 2.7.1.127 GO:0016301 ... P23677 38374076
    860480 8pph:B (1.7) BS01 ATP 2.7.1.127 GO:0016301 ... P23677 38374076
    860481 8ppi:A (1.65) BS01 69I 2.7.1.127 GO:0016301 ... P23677 38374076
    860482 8ppi:A (1.65) BS02 ATP 2.7.1.127 GO:0016301 ... P23677 38374076
    860483 8ppi:B (1.65) BS01 69I 2.7.1.127 GO:0016301 ... P23677 38374076
    860484 8ppi:B (1.65) BS02 ATP 2.7.1.127 GO:0016301 ... P23677 38374076
    860485 8ppj:A (1.75) BS01 ADP 2.7.1.127 GO:0016301 ... P23677 38374076
    860486 8ppj:A (1.75) BS02 661 2.7.1.127 GO:0016301 ... P23677 38374076
    860487 8ppj:B (1.75) BS01 ADP 2.7.1.127 GO:0016301 ... P23677 38374076
    860488 8ppj:B (1.75) BS02 661 2.7.1.127 GO:0016301 ... P23677 38374076
    860489 8ppk:A (2.98) BS01 rna ? GO:0000028 ... P08865 37802027
    860490 8ppk:B (2.98) BS01 rna ? GO:0002181 ... P61247 37802027
    860491 8ppk:C (2.98) BS01 rna ? GO:0002181 ... P15880 37802027
    860492 8ppk:D (2.98) BS01 rna 4.2.99.18 GO:0001228 ... P23396 37802027
    860493 8ppk:E (2.98) BS01 rna ? GO:0002181 ... P62701 37802027
    860494 8ppk:F (2.98) BS01 rna ? GO:0002181 ... P46782 37802027
    860495 8ppk:G (2.98) BS01 rna ? GO:0002181 ... P62753 37802027
    860496 8ppk:H (2.98) BS01 rna ? GO:0002181 ... P62081 37802027
    860497 8ppk:I (2.98) BS01 rna ? GO:0002181 ... P62241 37802027
    860498 8ppk:J (2.98) BS01 rna ? GO:0002181 ... P46781 37802027
    860499 8ppk:K (2.98) BS01 rna ? GO:0002181 ... P46783 37802027
    860500 8ppk:L (2.98) BS01 rna ? GO:0002181 ... P62280 37802027
    860501 8ppk:M (2.98) BS01 rna ? GO:0002181 ... P25398 37802027
    860502 8ppk:N (2.98) BS01 rna ? GO:0000462 ... P62277 37802027
    860503 8ppk:O (2.98) BS01 rna ? GO:0000028 ... P62263 37802027
    860504 8ppk:P (2.98) BS01 rna ? GO:0000056 ... P62841 37802027
    860505 8ppk:Q (2.98) BS01 rna ? GO:0000462 ... P62249 37802027
    860506 8ppk:R (2.98) BS01 rna ? GO:0002181 ... P08708 37802027
    860507 8ppk:S (2.98) BS01 rna ? GO:0002181 ... P62269 37802027
    860508 8ppk:T (2.98) BS01 rna ? GO:0000028 ... P39019 37802027
    860509 8ppk:U (2.98) BS01 rna ? GO:0002181 ... P60866 37802027
    860510 8ppk:W (2.98) BS01 rna ? GO:0002181 ... P62244 37802027
    860511 8ppk:X (2.98) BS01 rna ? GO:0002181 ... P62266 37802027
    860512 8ppk:Y (2.98) BS01 rna ? GO:0002181 ... P62847 37802027
    860513 8ppk:Z (2.98) BS01 rna ? GO:0002181 ... P62851 37802027
    860514 8ppk:a (2.98) BS01 rna ? GO:0002181 ... P62854 37802027
    860515 8ppk:a (2.98) BS02 ZN ? GO:0002181 ... P62854 37802027
    860516 8ppk:b (2.98) BS01 rna ? GO:0002181 ... P42677 37802027
    860517 8ppk:c (2.98) BS01 rna ? GO:0000028 ... P62857 37802027
    860518 8ppk:d (2.98) BS01 rna ? GO:0002181 ... P62273 37802027
    860519 8ppk:d (2.98) BS02 ZN ? GO:0002181 ... P62273 37802027
    860520 8ppk:e (2.98) BS01 rna ? GO:0002181 ... P62861 37802027
    860521 8ppk:f (2.98) BS01 rna ? GO:0002181 ... P62979 37802027
    860522 8ppk:f (2.98) BS02 ZN ? GO:0002181 ... P62979 37802027
    860523 8ppk:g (2.98) BS01 rna ? GO:0001891 ... P63244 37802027
    860524 8ppk:j (2.98) BS01 rna 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13
    N/A A0A088DIE1 37802027
    860525 8ppk:p (2.98) BS01 rna ? GO:0003723 ... P41567 37802027
    860526 8ppl:AA (2.65) BS01 rna ? GO:0000028 ... P08865 37802027
    860527 8ppl:AB (2.65) BS01 rna ? GO:0002181 ... P61247 37802027
    860528 8ppl:AC (2.65) BS01 rna ? GO:0002181 ... P15880 37802027
    860529 8ppl:AC (2.65) BS02 peptide ? GO:0002181 ... P15880 37802027
    860530 8ppl:AD (2.65) BS01 rna 4.2.99.18 GO:0001228 ... P23396 37802027
    860531 8ppl:AD (2.65) BS02 peptide 4.2.99.18 GO:0001228 ... P23396 37802027
    860532 8ppl:AE (2.65) BS01 rna ? GO:0002181 ... P62701 37802027
    860533 8ppl:AF (2.65) BS01 rna ? GO:0002181 ... P46782 37802027
    860534 8ppl:AF (2.65) BS02 MG ? GO:0002181 ... P46782 37802027
    860535 8ppl:AG (2.65) BS01 rna ? GO:0002181 ... P62753 37802027
    860536 8ppl:AH (2.65) BS01 rna ? GO:0002181 ... P62081 37802027
    860537 8ppl:AI (2.65) BS01 rna ? GO:0002181 ... P62241 37802027
    860538 8ppl:AJ (2.65) BS01 rna ? GO:0002181 ... P46781 37802027
    860539 8ppl:AK (2.65) BS01 rna ? GO:0002181 ... P46783 37802027
    860540 8ppl:AL (2.65) BS01 rna ? GO:0002181 ... P62280 37802027
    860541 8ppl:AM (2.65) BS01 rna ? GO:0002181 ... P25398 37802027
    860542 8ppl:AN (2.65) BS01 rna ? GO:0000462 ... P62277 37802027
    860543 8ppl:AO (2.65) BS01 rna ? GO:0000028 ... P62263 37802027
    860544 8ppl:AP (2.65) BS01 rna ? GO:0000056 ... P62841 37802027
    860545 8ppl:AP (2.65) BS02 rna ? GO:0000056 ... P62841 37802027
    860546 8ppl:AQ (2.65) BS01 rna ? GO:0000462 ... P62249 37802027
    860547 8ppl:AR (2.65) BS01 rna ? GO:0002181 ... P08708 37802027
    860548 8ppl:AS (2.65) BS01 rna ? GO:0002181 ... P62269 37802027
    860549 8ppl:AS (2.65) BS02 MG ? GO:0002181 ... P62269 37802027
    860550 8ppl:AS (2.65) BS03 MG ? GO:0002181 ... P62269 37802027
    860551 8ppl:AT (2.65) BS01 rna ? GO:0000028 ... P39019 37802027
    860552 8ppl:AU (2.65) BS01 rna ? GO:0002181 ... P60866 37802027
    860553 8ppl:AW (2.65) BS01 rna ? GO:0002181 ... P62244 37802027
    860554 8ppl:AX (2.65) BS01 rna ? GO:0003735 ... A0A4W2DI10 37802027
    860555 8ppl:AY (2.65) BS01 rna ? GO:0002181 ... P62847 37802027
    860556 8ppl:AZ (2.65) BS01 rna ? GO:0002181 ... P62851 37802027
    860557 8ppl:Aa (2.65) BS01 rna ? GO:0002181 ... P62854 37802027
    860558 8ppl:Aa (2.65) BS02 ZN ? GO:0002181 ... P62854 37802027
    860559 8ppl:Ab (2.65) BS01 rna ? GO:0002181 ... P42677 37802027
    860560 8ppl:Ac (2.65) BS01 rna ? GO:0000028 ... P62857 37802027
    860561 8ppl:Ad (2.65) BS01 rna ? GO:0002181 ... P62273 37802027
    860562 8ppl:Ad (2.65) BS02 ZN ? GO:0002181 ... P62273 37802027
    860563 8ppl:Ae (2.65) BS01 rna ? GO:0002181 ... P62861 37802027
    860564 8ppl:Ae (2.65) BS02 peptide ? GO:0002181 ... P62861 37802027
    860565 8ppl:Af (2.65) BS01 rna ? GO:0002181 ... P62979 37802027
    860566 8ppl:Af (2.65) BS02 ZN ? GO:0002181 ... P62979 37802027
    860567 8ppl:Ag (2.65) BS01 rna ? GO:0001891 ... P63244 37802027
    860568 8ppl:Ip (2.65) BS01 rna ? GO:0003723 ... P41567 37802027
    860569 8ppl:Iq (2.65) BS01 rna ? GO:0003723 ... P47813 37802027
    860570 8ppl:Ir (2.65) BS01 rna ? GO:0000423 ... P05198 37802027
    860571 8ppl:Is (2.65) BS01 rna ? GO:0001731 ... P20042 37802027
    860572 8ppl:Is (2.65) BS02 rna ? GO:0001731 ... P20042 37802027
    860573 8ppl:Is (2.65) BS03 ZN ? GO:0001731 ... P20042 37802027
    860574 8ppl:Is (2.65) BS04 GTP ? GO:0001731 ... P20042 37802027
    860575 8ppl:It (2.65) BS01 rna 3.6.5.3 GO:0000049 ... P41091 37802027
    860576 8ppl:It (2.65) BS02 GTP 3.6.5.3 GO:0000049 ... P41091 37802027
    860577 8ppl:It (2.65) BS03 MG 3.6.5.3 GO:0000049 ... P41091 37802027
    860578 8ppl:It (2.65) BS04 MET 3.6.5.3 GO:0000049 ... P41091 37802027
    860579 8ppl:Ix (2.65) BS01 rna ? GO:0001732 ... O15371 37802027
    860580 8ppl:Iy (2.65) BS01 rna ? GO:0001732 ... Q99613 37802027
    860581 8ppn:A (1.8) BS01 GAL ? GO:0030246 ... P17931 37658813
    860582 8ppn:A (1.8) BS02 YIO ? GO:0030246 ... P17931 37658813
    860583 8ppp:A (2.57) BS01 APC ? GO:0016877 ... A0A1M5ABR5 38269041
    860584 8ppp:B (2.57) BS01 APC ? GO:0016877 ... A0A1M5ABR5 38269041
    860585 8pps:A (2.3) BS01 MG ? N/A Q9I580 39247681
    860586 8pps:B (2.3) BS01 MG ? N/A Q9I580 39247681
    860587 8ppt:A (2.9) BS01 dna 2.7.7.7
    3.1.11.1
    GO:0003676 ... Q9V2F3 38097591
    860588 8ppt:A (2.9) BS02 MG 2.7.7.7
    3.1.11.1
    GO:0003676 ... Q9V2F3 38097591
    860589 8ppt:A (2.9) BS03 MG 2.7.7.7
    3.1.11.1
    GO:0003676 ... Q9V2F3 38097591
    860590 8ppt:B (2.9) BS01 dna 2.7.7.7
    3.1.11.1
    GO:0003677 ... Q9V2F4 38097591
    860591 8ppt:B (2.9) BS02 ZN 2.7.7.7
    3.1.11.1
    GO:0003677 ... Q9V2F4 38097591
    860592 8ppt:B (2.9) BS03 ZN 2.7.7.7
    3.1.11.1
    GO:0003677 ... Q9V2F4 38097591
    860593 8ppt:B (2.9) BS04 ZN 2.7.7.7
    3.1.11.1
    GO:0003677 ... Q9V2F4 38097591
    860594 8ppt:B (2.9) BS05 MG 2.7.7.7
    3.1.11.1
    GO:0003677 ... Q9V2F4 38097591
    860595 8ppu:A (3.02) BS01 dna 2.7.7.7
    3.1.11.1
    GO:0003676 ... Q9V2F3 38097591
    860596 8ppu:A (3.02) BS02 MG 2.7.7.7
    3.1.11.1
    GO:0003676 ... Q9V2F3 38097591
    860597 8ppu:A (3.02) BS03 MG 2.7.7.7
    3.1.11.1
    GO:0003676 ... Q9V2F3 38097591
    860598 8ppu:B (3.02) BS01 dna 2.7.7.7
    3.1.11.1
    GO:0003677 ... Q9V2F4 38097591
    860599 8ppu:B (3.02) BS02 dna 2.7.7.7
    3.1.11.1
    GO:0003677 ... Q9V2F4 38097591
    860600 8ppu:B (3.02) BS03 ZN 2.7.7.7
    3.1.11.1
    GO:0003677 ... Q9V2F4 38097591

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).