SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    860601 8qie:I (2.43) BS01 rna N/A N/A E9AEA8 N/A
    860602 8qie:I (2.43) BS02 rna N/A N/A E9AEA8 N/A
    860603 8qie:I (2.43) BS03 rna N/A N/A E9AEA8 N/A
    860604 8qie:J (2.43) BS01 rna N/A N/A E9AFK3 N/A
    860605 8qie:J (2.43) BS02 rna N/A N/A E9AFK3 N/A
    860606 8qie:K (2.43) BS01 rna N/A N/A Q4QBJ1 N/A
    860607 8qie:K (2.43) BS02 rna N/A N/A Q4QBJ1 N/A
    860608 8qie:K (2.43) BS03 rna N/A N/A Q4QBJ1 N/A
    860609 8qie:L (2.43) BS01 rna N/A N/A E9AFK0 N/A
    860610 8qie:L (2.43) BS02 rna N/A N/A E9AFK0 N/A
    860611 8qie:M (2.43) BS01 rna N/A N/A Q4Q6S3 N/A
    860612 8qie:M (2.43) BS02 rna N/A N/A Q4Q6S3 N/A
    860613 8qie:M (2.43) BS03 rna N/A N/A Q4Q6S3 N/A
    860614 8qie:N (2.43) BS01 rna N/A N/A O97213 N/A
    860615 8qie:N (2.43) BS02 rna N/A N/A O97213 N/A
    860616 8qie:N (2.43) BS03 rna N/A N/A O97213 N/A
    860617 8qie:O (2.43) BS01 rna N/A N/A E9AF10 N/A
    860618 8qie:O (2.43) BS02 rna N/A N/A E9AF10 N/A
    860619 8qie:O (2.43) BS03 rna N/A N/A E9AF10 N/A
    860620 8qie:P (2.43) BS01 rna N/A N/A Q4QG98 N/A
    860621 8qie:P (2.43) BS02 rna N/A N/A Q4QG98 N/A
    860622 8qie:Q (2.43) BS01 rna N/A N/A Q4QJ37 N/A
    860623 8qie:Q (2.43) BS02 rna N/A N/A Q4QJ37 N/A
    860624 8qie:Q (2.43) BS03 rna N/A N/A Q4QJ37 N/A
    860625 8qie:Q (2.43) BS04 rna N/A N/A Q4QJ37 N/A
    860626 8qie:Q (2.43) BS05 rna N/A N/A Q4QJ37 N/A
    860627 8qie:R (2.43) BS01 rna N/A N/A Q4Q5J4 N/A
    860628 8qie:R (2.43) BS02 rna N/A N/A Q4Q5J4 N/A
    860629 8qie:R (2.43) BS03 rna N/A N/A Q4Q5J4 N/A
    860630 8qie:S (2.43) BS01 rna N/A N/A Q4QEX4 N/A
    860631 8qie:S (2.43) BS02 rna N/A N/A Q4QEX4 N/A
    860632 8qie:S (2.43) BS03 rna N/A N/A Q4QEX4 N/A
    860633 8qie:SA (2.43) BS01 rna N/A N/A Q4FX73 N/A
    860634 8qie:SA (2.43) BS02 rna N/A N/A Q4FX73 N/A
    860635 8qie:SB (2.43) BS01 rna N/A N/A Q4Q0Q0 N/A
    860636 8qie:SC (2.43) BS01 rna N/A N/A Q4Q4A0 N/A
    860637 8qie:SD (2.43) BS01 rna N/A N/A Q4QIM3 N/A
    860638 8qie:SE (2.43) BS01 rna N/A N/A Q4QG31 N/A
    860639 8qie:SF (2.43) BS01 rna N/A N/A Q4QDL5 N/A
    860640 8qie:SG (2.43) BS01 rna N/A N/A Q9NE83 N/A
    860641 8qie:SH (2.43) BS01 rna N/A N/A Q868B1 N/A
    860642 8qie:SH (2.43) BS02 rna N/A N/A Q868B1 N/A
    860643 8qie:SH (2.43) BS03 MG N/A N/A Q868B1 N/A
    860644 8qie:SI (2.43) BS01 rna N/A N/A E9AC32 N/A
    860645 8qie:SJ (2.43) BS01 rna N/A N/A Q4QGW3 N/A
    860646 8qie:SK (2.43) BS01 rna N/A N/A P25204 N/A
    860647 8qie:SK (2.43) BS02 rna N/A N/A P25204 N/A
    860648 8qie:SK (2.43) BS03 rna N/A N/A P25204 N/A
    860649 8qie:SL (2.43) BS01 rna N/A N/A Q4Q9A5 N/A
    860650 8qie:SM (2.43) BS01 rna N/A N/A Q4Q8G4 N/A
    860651 8qie:SN (2.43) BS01 rna N/A N/A Q4Q1X7 N/A
    860652 8qie:SO (2.43) BS01 rna N/A N/A Q4Q8H1 N/A
    860653 8qie:SP (2.43) BS01 rna N/A N/A Q4QC89 N/A
    860654 8qie:SQ (2.43) BS01 rna N/A N/A Q4QG97 N/A
    860655 8qie:SR (2.43) BS01 rna N/A N/A Q4Q1Y3 N/A
    860656 8qie:SS (2.43) BS01 rna N/A N/A Q4Q817 N/A
    860657 8qie:ST (2.43) BS01 rna N/A N/A Q4Q3M1 N/A
    860658 8qie:SU (2.43) BS01 rna N/A N/A N/A N/A
    860659 8qie:SU (2.43) BS02 rna N/A N/A N/A N/A
    860660 8qie:SV (2.43) BS01 rna N/A N/A Q4Q806 N/A
    860661 8qie:SW (2.43) BS01 rna N/A N/A Q4QBV0 N/A
    860662 8qie:SX (2.43) BS01 rna N/A N/A E9AEE8 N/A
    860663 8qie:SX (2.43) BS02 MG N/A N/A E9AEE8 N/A
    860664 8qie:SZ (2.43) BS01 rna N/A N/A Q4Q1D2 N/A
    860665 8qie:Sa (2.43) BS01 rna N/A N/A Q4Q9X4 N/A
    860666 8qie:Sb (2.43) BS01 rna N/A N/A Q4Q8L6 N/A
    860667 8qie:Sb (2.43) BS02 MG N/A N/A Q4Q8L6 N/A
    860668 8qie:Sc (2.43) BS01 rna N/A N/A Q4Q140 N/A
    860669 8qie:Sd (2.43) BS01 rna N/A N/A Q4Q931 N/A
    860670 8qie:Se (2.43) BS01 rna N/A N/A Q4Q7P0 N/A
    860671 8qie:Sf (2.43) BS01 rna N/A N/A Q4QFK7 N/A
    860672 8qie:Sg (2.43) BS01 rna N/A N/A Q4Q7Y7 N/A
    860673 8qie:Sh (2.43) BS01 rna N/A N/A Q4Q5K7 N/A
    860674 8qie:T (2.43) BS01 rna N/A N/A Q4QAX6 N/A
    860675 8qie:T (2.43) BS02 rna N/A N/A Q4QAX6 N/A
    860676 8qie:T (2.43) BS03 rna N/A N/A Q4QAX6 N/A
    860677 8qie:T (2.43) BS04 rna N/A N/A Q4QAX6 N/A
    860678 8qie:U (2.43) BS01 rna N/A N/A Q4Q0X2 N/A
    860679 8qie:U (2.43) BS02 rna N/A N/A Q4Q0X2 N/A
    860680 8qie:U (2.43) BS03 rna N/A N/A Q4Q0X2 N/A
    860681 8qie:V (2.43) BS01 rna N/A N/A Q4QJ20 N/A
    860682 8qie:V (2.43) BS02 rna N/A N/A Q4QJ20 N/A
    860683 8qie:V (2.43) BS03 rna N/A N/A Q4QJ20 N/A
    860684 8qie:W (2.43) BS01 rna N/A N/A Q4QAC5 N/A
    860685 8qie:W (2.43) BS02 rna N/A N/A Q4QAC5 N/A
    860686 8qie:X (2.43) BS01 rna N/A N/A Q4Q1W6 N/A
    860687 8qie:X (2.43) BS02 rna N/A N/A Q4Q1W6 N/A
    860688 8qie:X (2.43) BS03 rna N/A N/A Q4Q1W6 N/A
    860689 8qie:Y (2.43) BS01 rna N/A N/A Q4Q504 N/A
    860690 8qie:Y (2.43) BS02 rna N/A N/A Q4Q504 N/A
    860691 8qie:Z (2.43) BS01 rna N/A N/A Q4QGW7 N/A
    860692 8qie:a (2.43) BS01 rna N/A N/A Q4Q8V7 N/A
    860693 8qie:a (2.43) BS02 rna N/A N/A Q4Q8V7 N/A
    860694 8qie:b (2.43) BS01 rna N/A N/A Q4Q178 N/A
    860695 8qie:b (2.43) BS02 rna N/A N/A Q4Q178 N/A
    860696 8qie:c (2.43) BS01 rna N/A N/A Q4Q9H4 N/A
    860697 8qie:c (2.43) BS02 rna N/A N/A Q4Q9H4 N/A
    860698 8qie:d (2.43) BS01 rna N/A N/A E9AEK1 N/A
    860699 8qie:e (2.43) BS01 rna N/A N/A E9AFF2 N/A
    860700 8qie:e (2.43) BS02 rna N/A N/A E9AFF2 N/A
    860701 8qie:e (2.43) BS03 rna N/A N/A E9AFF2 N/A
    860702 8qie:e (2.43) BS04 rna N/A N/A E9AFF2 N/A
    860703 8qie:f (2.43) BS01 rna N/A N/A Q4QC11 N/A
    860704 8qie:g (2.43) BS01 rna N/A N/A Q4QHL3 N/A
    860705 8qie:g (2.43) BS02 rna N/A N/A Q4QHL3 N/A
    860706 8qie:g (2.43) BS03 rna N/A N/A Q4QHL3 N/A
    860707 8qie:h (2.43) BS01 rna N/A N/A Q4QDP9 N/A
    860708 8qie:h (2.43) BS02 rna N/A N/A Q4QDP9 N/A
    860709 8qie:h (2.43) BS03 rna N/A N/A Q4QDP9 N/A
    860710 8qie:i (2.43) BS01 rna N/A N/A Q4QCE1 N/A
    860711 8qie:i (2.43) BS02 rna N/A N/A Q4QCE1 N/A
    860712 8qie:j (2.43) BS01 rna N/A N/A E9AEH2 N/A
    860713 8qie:j (2.43) BS02 rna N/A N/A E9AEH2 N/A
    860714 8qie:j (2.43) BS03 rna N/A N/A E9AEH2 N/A
    860715 8qie:k (2.43) BS01 rna N/A N/A Q4Q8X0 N/A
    860716 8qie:k (2.43) BS02 rna N/A N/A Q4Q8X0 N/A
    860717 8qie:k (2.43) BS03 rna N/A N/A Q4Q8X0 N/A
    860718 8qie:l (2.43) BS01 rna N/A N/A Q4QEQ0 N/A
    860719 8qie:l (2.43) BS02 rna N/A N/A Q4QEQ0 N/A
    860720 8qie:l (2.43) BS03 rna N/A N/A Q4QEQ0 N/A
    860721 8qie:m (2.43) BS01 rna N/A N/A P69201 N/A
    860722 8qie:m (2.43) BS02 rna N/A N/A P69201 N/A
    860723 8qie:m (2.43) BS03 rna N/A N/A P69201 N/A
    860724 8qie:n (2.43) BS01 rna N/A N/A N/A N/A
    860725 8qie:o (2.43) BS01 rna N/A N/A Q4QC01 N/A
    860726 8qie:o (2.43) BS02 rna N/A N/A Q4QC01 N/A
    860727 8qie:o (2.43) BS03 rna N/A N/A Q4QC01 N/A
    860728 8qie:o (2.43) BS04 rna N/A N/A Q4QC01 N/A
    860729 8qie:p (2.43) BS01 rna N/A N/A Q4Q3L3 N/A
    860730 8qie:p (2.43) BS02 rna N/A N/A Q4Q3L3 N/A
    860731 8qie:p (2.43) BS03 rna N/A N/A Q4Q3L3 N/A
    860732 8qie:p (2.43) BS04 ZN N/A N/A Q4Q3L3 N/A
    860733 8qif:A (2.45) BS01 FMN N/A N/A Q8LPD9 39037420
    860734 8qig:A (2.5) BS01 FMN N/A N/A Q8LPD9 39037420
    860735 8qih:A (2.5) BS01 FMN N/A N/A Q8LPD9 39037420
    860736 8qii:A (2.5) BS01 FMN N/A N/A Q8LPD9 39037420
    860737 8qik:A (2.55) BS01 FMN N/A N/A Q8LPD9 39037420
    860738 8qil:A (2.55) BS01 FMN N/A N/A Q8LPD9 39037420
    860739 8qim:A (2.6) BS01 FMN N/A N/A Q8LPD9 39037420
    860740 8qin:A (2.7) BS01 FMN N/A N/A Q8LPD9 39037420
    860741 8qio:A (2.75) BS01 FMN N/A N/A Q8LPD9 39037420
    860742 8qip:A (2.7) BS01 FMN N/A N/A Q8LPD9 39037420
    860743 8qiq:A (2.9) BS01 FMN N/A N/A Q8LPD9 39037420
    860744 8qir:A (3.0) BS01 FMN N/A N/A Q8LPD9 39037420
    860745 8qis:A (2.9) BS01 FMN N/A N/A Q8LPD9 39037420
    860746 8qit:A (2.9) BS01 FMN N/A N/A Q8LPD9 39037420
    860747 8qiu:A (3.0) BS01 FMN N/A N/A Q8LPD9 39037420
    860748 8qiv:A (3.1) BS01 FMN N/A N/A Q8LPD9 39037420
    860749 8qiw:A (3.05) BS01 FMN N/A N/A Q8LPD9 39037420
    860750 8qix:B (1.579) BS01 VJ7 N/A GO:0003824 ... B1MDL6 38896426
    860751 8qix:C (1.579) BS01 VJ7 N/A GO:0003824 ... B1MDL6 38896426
    860752 8qiy:A (1.5149) BS01 VCC N/A GO:0003824 ... B1MDL6 38896426
    860753 8qiy:B (1.5149) BS01 VCC N/A GO:0003824 ... B1MDL6 38896426
    860754 8qiz:A (1.13) BS01 LGU N/A N/A A0A7I9C8Z1 N/A
    860755 8qiz:A (1.13) BS02 BEM N/A N/A A0A7I9C8Z1 N/A
    860756 8qiz:A (1.13) BS03 BEM N/A N/A A0A7I9C8Z1 N/A
    860757 8qiz:A (1.13) BS04 BEM N/A N/A A0A7I9C8Z1 N/A
    860758 8qiz:A (1.13) BS05 BEM N/A N/A A0A7I9C8Z1 N/A
    860759 8qiz:A (1.13) BS06 BEM N/A N/A A0A7I9C8Z1 N/A
    860760 8qiz:A (1.13) BS07 BEM N/A N/A A0A7I9C8Z1 N/A
    860761 8qiz:A (1.13) BS08 BEM N/A N/A A0A7I9C8Z1 N/A
    860762 8qiz:A (1.13) BS09 BEM N/A N/A A0A7I9C8Z1 N/A
    860763 8qj0:L (2.3) BS01 MG 4.1.1.39 GO:0000287 ... P00875 38809540
    860764 8qj0:M (2.3) BS01 MG 4.1.1.39 GO:0000287 ... P00875 38809540
    860765 8qj0:N (2.3) BS01 MG 4.1.1.39 GO:0000287 ... P00875 38809540
    860766 8qj0:O (2.3) BS01 MG 4.1.1.39 GO:0000287 ... P00875 38809540
    860767 8qj4:A (1.7) BS01 NH4 ? GO:0005886 ... Q12R70 38838143
    860768 8qj4:A (1.7) BS02 NH4 ? GO:0005886 ... Q12R70 38838143
    860769 8qj4:B (1.7) BS01 NH4 ? GO:0005886 ... Q12R70 38838143
    860770 8qj4:B (1.7) BS02 NH4 ? GO:0005886 ... Q12R70 38838143
    860771 8qj5:A (1.63) BS01 P4K N/A GO:0009758 ... A0A2V0R8Q9 N/A
    860772 8qj6:A (1.55) BS01 HEC N/A N/A Q74CB3 39470321
    860773 8qj7:A (3.07) BS01 ZN 2.7.7.7 GO:0000166 ... P09884 38335062
    860774 8qj7:A (3.07) BS02 ZN 2.7.7.7 GO:0000166 ... P09884 38335062
    860775 8qj7:C (3.07) BS01 ZN 2.7.7.102 GO:0000287 ... P49642 38335062
    860776 8qj7:C (3.07) BS02 MN 2.7.7.102 GO:0000287 ... P49642 38335062
    860777 8qj7:C (3.07) BS03 ATP 2.7.7.102 GO:0000287 ... P49642 38335062
    860778 8qj7:D (3.07) BS01 SF4 ? GO:0003677 ... P49643 38335062
    860779 8qj8:A (1.538) BS01 VIW N/A GO:0003824 ... B1MDL6 38896426
    860780 8qj8:B (1.538) BS01 VIW N/A GO:0003824 ... B1MDL6 38896426
    860781 8qj8:C (1.538) BS01 VIW N/A GO:0003824 ... B1MDL6 38896426
    860782 8qjd:A (2.203) BS01 ZN N/A N/A S5MXP0 39481373
    860783 8qjd:B (2.203) BS01 ZN N/A N/A S5MXP0 39481373
    860784 8qjf:A (2.86) BS01 CLR N/A GO:0005243 ... P08034 39739741
    860785 8qjf:A (2.86) BS02 CLR N/A GO:0005243 ... P08034 39739741
    860786 8qjf:C (2.86) BS01 CLR N/A GO:0005243 ... P08034 39739741
    860787 8qjf:C (2.86) BS02 CLR N/A GO:0005243 ... P08034 39739741
    860788 8qjf:D (2.86) BS01 CLR N/A GO:0005243 ... P08034 39739741
    860789 8qjf:E (2.86) BS01 CLR N/A GO:0005243 ... P08034 39739741
    860790 8qjf:F (2.86) BS01 CLR N/A GO:0005243 ... P08034 39739741
    860791 8qjf:G (2.86) BS01 CLR N/A GO:0005243 ... P08034 39739741
    860792 8qjf:H (2.86) BS01 CLR N/A GO:0005243 ... P08034 39739741
    860793 8qjf:I (2.86) BS01 CLR N/A GO:0005243 ... P08034 39739741
    860794 8qjf:J (2.86) BS01 CLR N/A GO:0005243 ... P08034 39739741
    860795 8qjf:K (2.86) BS01 CLR N/A GO:0005243 ... P08034 39739741
    860796 8qjf:L (2.86) BS01 CLR N/A GO:0005243 ... P08034 39739741
    860797 8qjf:M (2.86) BS01 CLR N/A GO:0005243 ... P08034 39739741
    860798 8qjg:A (1.8) BS01 HEC N/A N/A Q74CB3 39470321
    860799 8qjg:A (1.8) BS02 HEC N/A N/A Q74CB3 39470321
    860800 8qjg:B (1.8) BS01 HEC N/A N/A Q74CB3 39470321
    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).