SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    860801 8qjg:C (1.8) BS01 HEC N/A N/A Q74CB3 39470321
    860802 8qjg:D (1.8) BS01 HEC N/A N/A Q74CB3 39470321
    860803 8qjg:E (1.8) BS01 HEC N/A N/A Q74CB3 39470321
    860804 8qjg:F (1.8) BS01 HEC N/A N/A Q74CB3 39470321
    860805 8qji:A (3.02) BS01 VNG N/A GO:0004672 ... P49841 39158934
    860806 8qjk:A (1.761) BS01 rna N/A N/A N/A N/A
    860807 8qjl:A (1.4) BS01 ZN N/A GO:0003676 ... B2FSF8 39361520
    860808 8qjl:A (1.4) BS02 ZN N/A GO:0003676 ... B2FSF8 39361520
    860809 8qjl:A (1.4) BS03 ZN N/A GO:0003676 ... B2FSF8 39361520
    860810 8qjm:A (1.65) BS01 C5P N/A GO:0003676 ... B2FSF8 39361520
    860811 8qjm:A (1.65) BS02 ZN N/A GO:0003676 ... B2FSF8 39361520
    860812 8qjm:A (1.65) BS03 ZN N/A GO:0003676 ... B2FSF8 39361520
    860813 8qjm:A (1.65) BS04 ZN N/A GO:0003676 ... B2FSF8 39361520
    860814 8qjm:B (1.65) BS01 C5P N/A GO:0003676 ... B2FSF8 39361520
    860815 8qjm:B (1.65) BS02 C5P N/A GO:0003676 ... B2FSF8 39361520
    860816 8qjm:B (1.65) BS03 ZN N/A GO:0003676 ... B2FSF8 39361520
    860817 8qjm:B (1.65) BS04 ZN N/A GO:0003676 ... B2FSF8 39361520
    860818 8qjm:B (1.65) BS05 ZN N/A GO:0003676 ... B2FSF8 39361520
    860819 8qjn:A (1.65) BS01 ZN N/A GO:0003676 ... B2FSF8 39361520
    860820 8qjn:A (1.65) BS02 ZN N/A GO:0003676 ... B2FSF8 39361520
    860821 8qjn:A (1.65) BS03 ZN N/A GO:0003676 ... B2FSF8 39361520
    860822 8qjn:B (1.65) BS01 ZN N/A GO:0003676 ... B2FSF8 39361520
    860823 8qjn:B (1.65) BS02 ZN N/A GO:0003676 ... B2FSF8 39361520
    860824 8qjn:B (1.65) BS03 ZN N/A GO:0003676 ... B2FSF8 39361520
    860825 8qjn:B (1.65) BS04 AMP N/A GO:0003676 ... B2FSF8 39361520
    860826 8qjo:A (1.85) BS01 ZN N/A GO:0003676 ... B2FSF8 39361520
    860827 8qjo:A (1.85) BS02 ZN N/A GO:0003676 ... B2FSF8 39361520
    860828 8qjo:A (1.85) BS03 ZN N/A GO:0003676 ... B2FSF8 39361520
    860829 8qjo:A (1.85) BS04 5GP N/A GO:0003676 ... B2FSF8 39361520
    860830 8qjo:B (1.85) BS01 ZN N/A GO:0003676 ... B2FSF8 39361520
    860831 8qjo:B (1.85) BS02 ZN N/A GO:0003676 ... B2FSF8 39361520
    860832 8qjo:B (1.85) BS03 ZN N/A GO:0003676 ... B2FSF8 39361520
    860833 8qjo:B (1.85) BS04 5GP N/A GO:0003676 ... B2FSF8 39361520
    860834 8qjp:A (1.2) BS01 ZN N/A GO:0003676 ... B2FSF8 39361520
    860835 8qjp:A (1.2) BS02 ZN N/A GO:0003676 ... B2FSF8 39361520
    860836 8qjp:A (1.2) BS03 ZN N/A GO:0003676 ... B2FSF8 39361520
    860837 8qjp:A (1.2) BS04 U5P N/A GO:0003676 ... B2FSF8 39361520
    860838 8qjp:B (1.2) BS01 ZN N/A GO:0003676 ... B2FSF8 39361520
    860839 8qjp:B (1.2) BS02 ZN N/A GO:0003676 ... B2FSF8 39361520
    860840 8qjp:B (1.2) BS03 ZN N/A GO:0003676 ... B2FSF8 39361520
    860841 8qjp:B (1.2) BS04 U5P N/A GO:0003676 ... B2FSF8 39361520
    860842 8qjq:A (1.8) BS01 ZN N/A GO:0003676 ... B2FSF8 39361520
    860843 8qjq:A (1.8) BS02 ZN N/A GO:0003676 ... B2FSF8 39361520
    860844 8qjq:A (1.8) BS03 ZN N/A GO:0003676 ... B2FSF8 39361520
    860845 8qjq:A (1.8) BS04 C5P N/A GO:0003676 ... B2FSF8 39361520
    860846 8qjq:B (1.8) BS01 ZN N/A GO:0003676 ... B2FSF8 39361520
    860847 8qjq:B (1.8) BS02 ZN N/A GO:0003676 ... B2FSF8 39361520
    860848 8qjq:B (1.8) BS03 ZN N/A GO:0003676 ... B2FSF8 39361520
    860849 8qjq:B (1.8) BS04 C5P N/A GO:0003676 ... B2FSF8 39361520
    860850 8qjr:C (3.17) BS01 VLH ? N/A P40337 38180485
    860851 8qjr:F (3.17) BS01 VLH ? N/A P40337 38180485
    860852 8qjr:G (3.17) BS01 VLH 3.6.4.- GO:0006338 ... P51532 38180485
    860853 8qjr:H (3.17) BS01 VLH 3.6.4.- GO:0006338 ... P51532 38180485
    860854 8qjs:C (3.191) BS01 VL6 ? N/A P40337 38180485
    860855 8qjs:F (3.191) BS01 VL6 ? N/A P40337 38180485
    860856 8qjs:I (3.191) BS01 VL6 ? N/A P40337 38180485
    860857 8qjs:L (3.191) BS01 VL6 ? N/A P40337 38180485
    860858 8qjt:A (2.568) BS01 VLC 3.6.4.- GO:0006338 ... P51531 38180485
    860859 8qjt:B (2.568) BS01 VLC 3.6.4.- GO:0006338 ... P51531 38180485
    860860 8qjt:C (2.568) BS01 VLC 3.6.4.- GO:0006338 ... P51531 38180485
    860861 8qjz:A (1.35) BS01 MN 3.6.1.54 GO:0005737 ... A0A066QL39 38579010
    860862 8qjz:A (1.35) BS02 MN 3.6.1.54 GO:0005737 ... A0A066QL39 38579010
    860863 8qjz:A (1.35) BS03 LP5 3.6.1.54 GO:0005737 ... A0A066QL39 38579010
    860864 8qk0:A (1.9) BS01 HEC N/A N/A Q74CB3 39470321
    860865 8qk0:C (1.9) BS01 HEC N/A N/A Q74CB3 39470321
    860866 8qk2:A (1.95) BS01 MN 3.6.1.54 GO:0005737 ... A6T5R0 38579010
    860867 8qk2:A (1.95) BS02 MN 3.6.1.54 GO:0005737 ... A6T5R0 38579010
    860868 8qk2:A (1.95) BS03 VTF 3.6.1.54 GO:0005737 ... A6T5R0 38579010
    860869 8qk5:A (1.95) BS01 MN 3.6.1.54 GO:0005737 ... A6T5R0 38579010
    860870 8qk5:A (1.95) BS02 MN 3.6.1.54 GO:0005737 ... A6T5R0 38579010
    860871 8qk5:A (1.95) BS03 VN6 3.6.1.54 GO:0005737 ... A6T5R0 38579010
    860872 8qk6:A (3.18) BS01 CLR N/A GO:0005243 ... P08034 39739741
    860873 8qk6:A (3.18) BS02 CLR N/A GO:0005243 ... P08034 39739741
    860874 8qk6:B (3.18) BS01 CLR N/A GO:0005243 ... P08034 39739741
    860875 8qk6:B (3.18) BS02 CLR N/A GO:0005243 ... P08034 39739741
    860876 8qk6:C (3.18) BS01 CLR N/A GO:0005243 ... P08034 39739741
    860877 8qk6:C (3.18) BS02 CLR N/A GO:0005243 ... P08034 39739741
    860878 8qk6:D (3.18) BS01 CLR N/A GO:0005243 ... P08034 39739741
    860879 8qk6:D (3.18) BS02 CLR N/A GO:0005243 ... P08034 39739741
    860880 8qk6:E (3.18) BS01 CLR N/A GO:0005243 ... P08034 39739741
    860881 8qk6:E (3.18) BS02 CLR N/A GO:0005243 ... P08034 39739741
    860882 8qk6:F (3.18) BS01 CLR N/A GO:0005243 ... P08034 39739741
    860883 8qk6:F (3.18) BS02 CLR N/A GO:0005243 ... P08034 39739741
    860884 8qk7:6 (2.77) BS01 rna N/A GO:0003747 ... P07012 N/A
    860885 8qk7:6 (2.77) BS02 rna N/A GO:0003747 ... P07012 N/A
    860886 8qk7:6 (2.77) BS03 rna N/A GO:0003747 ... P07012 N/A
    860887 8qk7:6 (2.77) BS04 rna N/A GO:0003747 ... P07012 N/A
    860888 8qk7:B (2.77) BS01 rna N/A GO:0000027 ... P60422 N/A
    860889 8qk7:B (2.77) BS02 rna N/A GO:0000027 ... P60422 N/A
    860890 8qk7:C (2.77) BS01 rna N/A GO:0000027 ... P60438 N/A
    860891 8qk7:D (2.77) BS01 rna N/A GO:0001070 ... P60723 N/A
    860892 8qk7:E (2.77) BS01 rna N/A GO:0000027 ... P62399 N/A
    860893 8qk7:E (2.77) BS02 rna N/A GO:0000027 ... P62399 N/A
    860894 8qk7:E (2.77) BS03 rna N/A GO:0000027 ... P62399 N/A
    860895 8qk7:F (2.77) BS01 rna N/A GO:0000027 ... P0AG55 N/A
    860896 8qk7:G (2.77) BS01 rna N/A GO:0002181 ... P0A7R1 N/A
    860897 8qk7:I (2.77) BS01 rna N/A GO:0000027 ... P0A7J7 N/A
    860898 8qk7:J (2.77) BS01 rna N/A GO:0002181 ... P0AA10 N/A
    860899 8qk7:K (2.77) BS01 rna N/A GO:0002181 ... P0ADY3 N/A
    860900 8qk7:K (2.77) BS02 rna N/A GO:0002181 ... P0ADY3 N/A
    860901 8qk7:L (2.77) BS01 rna N/A GO:0002181 ... P02413 N/A
    860902 8qk7:M (2.77) BS01 rna N/A GO:0000027 ... P0ADY7 N/A
    860903 8qk7:M (2.77) BS02 rna N/A GO:0000027 ... P0ADY7 N/A
    860904 8qk7:N (2.77) BS01 rna N/A GO:0000027 ... P0AG44 N/A
    860905 8qk7:O (2.77) BS01 rna N/A GO:0002181 ... P0C018 N/A
    860906 8qk7:O (2.77) BS02 rna N/A GO:0002181 ... P0C018 N/A
    860907 8qk7:P (2.77) BS01 rna N/A GO:0000027 ... P0A7K6 N/A
    860908 8qk7:P (2.77) BS02 rna N/A GO:0000027 ... P0A7K6 N/A
    860909 8qk7:Q (2.77) BS01 rna N/A GO:0000027 ... P0A7L3 N/A
    860910 8qk7:R (2.77) BS01 rna N/A GO:0002181 ... P0AG48 N/A
    860911 8qk7:S (2.77) BS01 rna N/A GO:0002181 ... P61175 N/A
    860912 8qk7:T (2.77) BS01 rna N/A GO:0000027 ... P0ADZ0 N/A
    860913 8qk7:U (2.77) BS01 rna N/A GO:0000027 ... P60624 N/A
    860914 8qk7:V (2.77) BS01 rna N/A GO:0000027 ... P68919 N/A
    860915 8qk7:W (2.77) BS01 rna N/A GO:0000027 ... P0A7L8 N/A
    860916 8qk7:W (2.77) BS02 rna N/A GO:0000027 ... P0A7L8 N/A
    860917 8qk7:X (2.77) BS01 rna N/A GO:0000027 ... P0A7M2 N/A
    860918 8qk7:Y (2.77) BS01 rna N/A GO:0000027 ... P0A7M6 N/A
    860919 8qk7:Z (2.77) BS01 rna N/A GO:0000027 ... P0AG51 N/A
    860920 8qk7:Z (2.77) BS02 rna N/A GO:0000027 ... P0AG51 N/A
    860921 8qk7:a (2.77) BS01 rna N/A GO:0002181 ... P0A7M9 N/A
    860922 8qk7:a (2.77) BS02 ZN N/A GO:0002181 ... P0A7M9 N/A
    860923 8qk7:b (2.77) BS01 rna N/A GO:0000027 ... P0A7N4 N/A
    860924 8qk7:c (2.77) BS01 rna N/A GO:0000027 ... P0A7N9 N/A
    860925 8qk7:d (2.77) BS01 rna N/A GO:0002181 ... P0A7P5 N/A
    860926 8qk7:e (2.77) BS01 rna N/A GO:0002181 ... P0A7Q1 N/A
    860927 8qk7:f (2.77) BS01 rna N/A GO:0002181 ... P0A7Q6 N/A
    860928 8qk7:f (2.77) BS02 ZN N/A GO:0002181 ... P0A7Q6 N/A
    860929 8qk7:g (2.77) BS01 rna N/A GO:0000028 ... P0A7V0 N/A
    860930 8qk7:h (2.77) BS01 rna N/A GO:0000028 ... P0A7V3 N/A
    860931 8qk7:h (2.77) BS02 rna N/A GO:0000028 ... P0A7V3 N/A
    860932 8qk7:i (2.77) BS01 rna N/A GO:0000028 ... P0A7V8 N/A
    860933 8qk7:j (2.77) BS01 rna N/A GO:0000028 ... P0A7W1 N/A
    860934 8qk7:j (2.77) BS02 rna N/A GO:0000028 ... P0A7W1 N/A
    860935 8qk7:k (2.77) BS01 rna N/A GO:0002181 ... P02358 N/A
    860936 8qk7:l (2.77) BS01 rna N/A GO:0000028 ... P02359 N/A
    860937 8qk7:l (2.77) BS02 rna N/A GO:0000028 ... P02359 N/A
    860938 8qk7:m (2.77) BS01 rna N/A GO:0000028 ... P0A7W7 N/A
    860939 8qk7:n (2.77) BS01 rna N/A GO:0000049 ... P0A7X3 N/A
    860940 8qk7:n (2.77) BS02 rna N/A GO:0000049 ... P0A7X3 N/A
    860941 8qk7:o (2.77) BS01 rna N/A GO:0000049 ... P0A7R5 N/A
    860942 8qk7:p (2.77) BS01 rna N/A GO:0002181 ... P0A7R9 N/A
    860943 8qk7:q (2.77) BS01 rna N/A GO:0000049 ... P0A7S3 N/A
    860944 8qk7:r (2.77) BS01 rna N/A GO:0000049 ... P0A7S9 N/A
    860945 8qk7:r (2.77) BS02 rna N/A GO:0000049 ... P0A7S9 N/A
    860946 8qk7:s (2.77) BS01 rna N/A GO:0000028 ... P0AG59 N/A
    860947 8qk7:t (2.77) BS01 rna N/A GO:0000028 ... P0ADZ4 N/A
    860948 8qk7:t (2.77) BS02 rna N/A GO:0000028 ... P0ADZ4 N/A
    860949 8qk7:u (2.77) BS01 rna N/A GO:0000028 ... P0A7T3 N/A
    860950 8qk7:v (2.77) BS01 rna N/A GO:0000028 ... P0AG63 N/A
    860951 8qk7:w (2.77) BS01 rna N/A GO:0002181 ... P0A7T7 N/A
    860952 8qk7:x (2.77) BS01 rna N/A GO:0000028 ... P0A7U3 N/A
    860953 8qk7:y (2.77) BS01 rna N/A GO:0000028 ... P0A7U7 N/A
    860954 8qk7:z (2.77) BS01 rna N/A GO:0000028 ... P68679 N/A
    860955 8qk7:z (2.77) BS02 rna N/A GO:0000028 ... P68679 N/A
    860956 8qk9:A (1.9) BS01 MN 3.6.1.54 GO:0005737 ... A0A066QL39 38579010
    860957 8qk9:A (1.9) BS02 MN 3.6.1.54 GO:0005737 ... A0A066QL39 38579010
    860958 8qk9:A (1.9) BS03 VQ9 3.6.1.54 GO:0005737 ... A0A066QL39 38579010
    860959 8qka:A (2.0) BS01 MN 3.6.1.54 GO:0005737 ... A6T5R0 38579010
    860960 8qka:A (2.0) BS02 MN 3.6.1.54 GO:0005737 ... A6T5R0 38579010
    860961 8qka:A (2.0) BS03 VTK 3.6.1.54 GO:0005737 ... A6T5R0 38579010
    860962 8qkb:A (1.6) BS01 D1R 3.4.22.15 GO:0006508 ... P07711 38630165
    860963 8qkb:B (1.6) BS01 D1R 3.4.22.15 GO:0006508 ... P07711 38630165
    860964 8qkb:C (1.6) BS01 D1R 3.4.22.15 GO:0006508 ... P07711 38630165
    860965 8qkb:D (1.6) BS01 D1R 3.4.22.15 GO:0006508 ... P07711 38630165
    860966 8qke:A (1.504) BS01 peptide 3.4.21.62 GO:0004252 ... E6Y8B9 38503166
    860967 8qke:A (1.504) BS02 CA 3.4.21.62 GO:0004252 ... E6Y8B9 38503166
    860968 8qke:A (1.504) BS03 CA 3.4.21.62 GO:0004252 ... E6Y8B9 38503166
    860969 8qke:A (1.504) BS04 CA 3.4.21.62 GO:0004252 ... E6Y8B9 38503166
    860970 8qke:B (1.504) BS01 peptide 3.4.21.62 GO:0004252 ... E6Y8B9 38503166
    860971 8qke:B (1.504) BS02 CA 3.4.21.62 GO:0004252 ... E6Y8B9 38503166
    860972 8qke:B (1.504) BS03 CA 3.4.21.62 GO:0004252 ... E6Y8B9 38503166
    860973 8qke:B (1.504) BS04 CA 3.4.21.62 GO:0004252 ... E6Y8B9 38503166
    860974 8qkg:A (1.538) BS01 peptide 3.4.21.62 GO:0004252 ... E6Y8B9 38503166
    860975 8qkg:A (1.538) BS02 CA 3.4.21.62 GO:0004252 ... E6Y8B9 38503166
    860976 8qkg:A (1.538) BS03 CA 3.4.21.62 GO:0004252 ... E6Y8B9 38503166
    860977 8qkg:A (1.538) BS04 CA 3.4.21.62 GO:0004252 ... E6Y8B9 38503166
    860978 8qkg:B (1.538) BS01 peptide 3.4.21.62 GO:0004252 ... E6Y8B9 38503166
    860979 8qkg:B (1.538) BS02 CA 3.4.21.62 GO:0004252 ... E6Y8B9 38503166
    860980 8qkg:B (1.538) BS03 CA 3.4.21.62 GO:0004252 ... E6Y8B9 38503166
    860981 8qkg:B (1.538) BS04 CA 3.4.21.62 GO:0004252 ... E6Y8B9 38503166
    860982 8qkh:A (4.15) BS01 ZN N/A GO:0046872 ... A1YTN7 N/A
    860983 8qki:A (3.46) BS01 CLR N/A GO:0005243 ... P08034 39739741
    860984 8qki:A (3.46) BS02 CLR N/A GO:0005243 ... P08034 39739741
    860985 8qki:B (3.46) BS01 CLR N/A GO:0005243 ... P08034 39739741
    860986 8qki:C (3.46) BS01 CLR N/A GO:0005243 ... P08034 39739741
    860987 8qki:D (3.46) BS01 CLR N/A GO:0005243 ... P08034 39739741
    860988 8qki:E (3.46) BS01 CLR N/A GO:0005243 ... P08034 39739741
    860989 8qki:F (3.46) BS01 CLR N/A GO:0005243 ... P08034 39739741
    860990 8qkj:A (1.767) BS01 peptide 3.4.21.62 GO:0004252 ... E6Y8B9 38503166
    860991 8qkj:A (1.767) BS02 CA 3.4.21.62 GO:0004252 ... E6Y8B9 38503166
    860992 8qkj:A (1.767) BS03 CA 3.4.21.62 GO:0004252 ... E6Y8B9 38503166
    860993 8qkj:A (1.767) BS04 CA 3.4.21.62 GO:0004252 ... E6Y8B9 38503166
    860994 8qkj:B (1.767) BS01 peptide 3.4.21.62 GO:0004252 ... E6Y8B9 38503166
    860995 8qkj:B (1.767) BS02 CA 3.4.21.62 GO:0004252 ... E6Y8B9 38503166
    860996 8qkj:B (1.767) BS03 CA 3.4.21.62 GO:0004252 ... E6Y8B9 38503166
    860997 8qkj:B (1.767) BS04 CA 3.4.21.62 GO:0004252 ... E6Y8B9 38503166
    860998 8qkt:AAA (3.261) BS01 dna ? GO:0000786 ... P68431 N/A
    860999 8qkt:AAA (3.261) BS02 dna ? GO:0000786 ... P68431 N/A
    861000 8qkt:BBB (3.261) BS01 dna ? GO:0003677 ... A0A8C1JQV0 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).