SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    861801 8pvk:Ce (2.55) BS02 rna ? GO:0000027 ... G0S495 37921038
    861802 8pvk:Ce (2.55) BS03 rna ? GO:0000027 ... G0S495 37921038
    861803 8pvk:Cf (2.55) BS01 rna ? GO:0000027 ... G0SF80 37921038
    861804 8pvk:Cf (2.55) BS02 rna ? GO:0000027 ... G0SF80 37921038
    861805 8pvk:Cg (2.55) BS01 rna ? GO:0005634 ... G0SCH6 37921038
    861806 8pvk:Cz (2.55) BS01 rna ? GO:0005730 ... G0SCP3 37921038
    861807 8pvk:Cz (2.55) BS02 rna ? GO:0005730 ... G0SCP3 37921038
    861808 8pvk:LA (2.55) BS01 rna ? GO:0002181 ... G0S4P8 37921038
    861809 8pvk:LB (2.55) BS01 rna ? GO:0003723 ... G0RXW1 37921038
    861810 8pvk:LC (2.55) BS01 rna ? GO:0003735 ... G0SFC3 37921038
    861811 8pvk:LC (2.55) BS02 rna ? GO:0003735 ... G0SFC3 37921038
    861812 8pvk:LD (2.55) BS01 rna ? GO:0000027 ... G0SEG2 37921038
    861813 8pvk:LD (2.55) BS02 rna ? GO:0000027 ... G0SEG2 37921038
    861814 8pvk:LE (2.55) BS01 rna ? GO:0000027 ... G0S0D6 37921038
    861815 8pvk:LF (2.55) BS01 rna ? GO:0000463 ... G0SFL0 37921038
    861816 8pvk:LG (2.55) BS01 rna ? GO:0003723 ... G0SAJ9 37921038
    861817 8pvk:LG (2.55) BS02 rna ? GO:0003723 ... G0SAJ9 37921038
    861818 8pvk:LG (2.55) BS03 rna ? GO:0003723 ... G0SAJ9 37921038
    861819 8pvk:LH (2.55) BS01 rna N/A GO:0003735 ... N/A 37921038
    861820 8pvk:LJ (2.55) BS01 rna ? GO:0003735 ... G0SHQ2 37921038
    861821 8pvk:LJ (2.55) BS02 rna ? GO:0003735 ... G0SHQ2 37921038
    861822 8pvk:LK (2.55) BS01 rna ? GO:0000027 ... G0SGH8 37921038
    861823 8pvk:LL (2.55) BS01 rna ? GO:0003723 ... G0S992 37921038
    861824 8pvk:LL (2.55) BS02 rna ? GO:0003723 ... G0S992 37921038
    861825 8pvk:LM (2.55) BS01 rna ? GO:0003723 ... G0S1R0 37921038
    861826 8pvk:LN (2.55) BS01 rna ? GO:0002181 ... G0RZ88 37921038
    861827 8pvk:LN (2.55) BS02 rna ? GO:0002181 ... G0RZ88 37921038
    861828 8pvk:LO (2.55) BS01 rna ? GO:0003729 ... G0SH61 37921038
    861829 8pvk:LP (2.55) BS01 rna ? GO:0002181 ... G0SGY1 37921038
    861830 8pvk:LP (2.55) BS02 rna ? GO:0002181 ... G0SGY1 37921038
    861831 8pvk:LQ (2.55) BS01 rna ? GO:0003723 ... G0S9B5 37921038
    861832 8pvk:LR (2.55) BS01 rna ? GO:0003735 ... G0S9T3 37921038
    861833 8pvk:LS (2.55) BS01 rna ? GO:0003735 ... G0SCE2 37921038
    861834 8pvk:LT (2.55) BS01 rna ? GO:0003735 ... G0S0Z3 37921038
    861835 8pvk:LU (2.55) BS01 rna ? GO:0002181 ... G0SDS8 37921038
    861836 8pvk:LV (2.55) BS01 rna ? GO:0003735 ... G0SI44 37921038
    861837 8pvk:LX (2.55) BS01 rna ? GO:0003735 ... G0S507 37921038
    861838 8pvk:LX (2.55) BS02 rna ? GO:0003735 ... G0S507 37921038
    861839 8pvk:LY (2.55) BS01 rna ? GO:0003723 ... G0RYN9 37921038
    861840 8pvk:LY (2.55) BS02 rna ? GO:0003723 ... G0RYN9 37921038
    861841 8pvk:LZ (2.55) BS01 rna ? GO:0003735 ... G0RZE9 37921038
    861842 8pvk:La (2.55) BS01 rna N/A GO:0003735 ... N/A 37921038
    861843 8pvk:Lc (2.55) BS01 rna ? GO:0003723 ... G0SEI0 37921038
    861844 8pvk:Ld (2.55) BS01 rna ? GO:0002181 ... G0SD68 37921038
    861845 8pvk:Le (2.55) BS01 rna ? GO:0003735 ... G0S6V4 37921038
    861846 8pvk:Lf (2.55) BS01 rna ? GO:0003735 ... G0SCL3 37921038
    861847 8pvk:Lg (2.55) BS01 rna ? GO:0003735 ... G0SFN0 37921038
    861848 8pvk:Lg (2.55) BS02 ZN ? GO:0003735 ... G0SFN0 37921038
    861849 8pvk:Lh (2.55) BS01 rna 2.4.99.18 GO:0003735 ... G0S0D7 37921038
    861850 8pvk:Lh (2.55) BS02 rna 2.4.99.18 GO:0003735 ... G0S0D7 37921038
    861851 8pvk:Li (2.55) BS01 rna ? GO:0003735 ... G0SBN1 37921038
    861852 8pvk:Lj (2.55) BS01 rna ? GO:0003723 ... G0S101 37921038
    861853 8pvk:Lj (2.55) BS02 rna ? GO:0003723 ... G0S101 37921038
    861854 8pvk:Lj (2.55) BS03 ZN ? GO:0003723 ... G0S101 37921038
    861855 8pvk:Lk (2.55) BS01 rna N/A GO:0003735 ... N/A 37921038
    861856 8pvk:Ll (2.55) BS01 rna ? GO:0003735 ... Q2H9R2 37921038
    861857 8pvk:Ll (2.55) BS02 rna ? GO:0003735 ... Q2H9R2 37921038
    861858 8pvk:Lp (2.55) BS01 rna ? GO:0003735 ... G0S6B0 37921038
    861859 8pvk:Lp (2.55) BS02 ZN ? GO:0003735 ... G0S6B0 37921038
    861860 8pvk:Lq (2.55) BS01 rna ? GO:0003735 ... G0SHJ6 37921038
    861861 8pvk:Lr (2.55) BS01 rna ? GO:0000055 ... G0S4Z9 37921038
    861862 8pvl:CF (2.19) BS01 rna ? GO:0000027 ... G0S616 37921038
    861863 8pvl:CH (2.19) BS01 rna ? GO:0005525 ... G0S8F1 37921038
    861864 8pvl:CH (2.19) BS02 rna ? GO:0005525 ... G0S8F1 37921038
    861865 8pvl:CH (2.19) BS03 GTP ? GO:0005525 ... G0S8F1 37921038
    861866 8pvl:CH (2.19) BS04 MG ? GO:0005525 ... G0S8F1 37921038
    861867 8pvl:CJ (2.19) BS01 rna ? GO:0000463 ... G0SHX6 37921038
    861868 8pvl:CJ (2.19) BS02 rna ? GO:0000463 ... G0SHX6 37921038
    861869 8pvl:CK (2.19) BS01 rna ? GO:0005730 ... G0S081 37921038
    861870 8pvl:CL (2.19) BS01 rna ? GO:0005525 ... G0SEW3 37921038
    861871 8pvl:CM (2.19) BS01 rna ? GO:0000463 ... G0SFL0 37921038
    861872 8pvl:CM (2.19) BS02 rna ? GO:0000463 ... G0SFL0 37921038
    861873 8pvl:CN (2.19) BS01 rna ? GO:0000054 ... G0S683 37921038
    861874 8pvl:CO (2.19) BS01 rna ? GO:0030687 ... G0SHK0 37921038
    861875 8pvl:CQ (2.19) BS01 rna ? GO:0003735 ... G0S497 37921038
    861876 8pvl:CQ (2.19) BS02 ZN ? GO:0003735 ... G0S497 37921038
    861877 8pvl:Cb (2.19) BS01 rna ? GO:0003676 ... G0SB32 37921038
    861878 8pvl:Cb (2.19) BS02 ZN ? GO:0003676 ... G0SB32 37921038
    861879 8pvl:Cd (2.19) BS01 rna ? GO:0005525 ... G0SBX1 37921038
    861880 8pvl:Cd (2.19) BS02 MG ? GO:0005525 ... G0SBX1 37921038
    861881 8pvl:Cd (2.19) BS03 MG ? GO:0005525 ... G0SBX1 37921038
    861882 8pvl:Cd (2.19) BS04 GTP ? GO:0005525 ... G0SBX1 37921038
    861883 8pvl:Ce (2.19) BS01 rna ? GO:0000027 ... G0S495 37921038
    861884 8pvl:Ce (2.19) BS02 rna ? GO:0000027 ... G0S495 37921038
    861885 8pvl:Cf (2.19) BS01 rna ? GO:0000027 ... G0SF80 37921038
    861886 8pvl:Cf (2.19) BS02 rna ? GO:0000027 ... G0SF80 37921038
    861887 8pvl:Cg (2.19) BS01 rna ? GO:0005634 ... G0SCH6 37921038
    861888 8pvl:Cz (2.19) BS01 rna ? GO:0005730 ... G0SCP3 37921038
    861889 8pvl:Cz (2.19) BS02 rna ? GO:0005730 ... G0SCP3 37921038
    861890 8pvl:LA (2.19) BS01 rna ? GO:0002181 ... G0S4P8 37921038
    861891 8pvl:LB (2.19) BS01 rna ? GO:0003723 ... G0RXW1 37921038
    861892 8pvl:LC (2.19) BS01 rna ? GO:0003735 ... G0SFC3 37921038
    861893 8pvl:LC (2.19) BS02 rna ? GO:0003735 ... G0SFC3 37921038
    861894 8pvl:LD (2.19) BS01 rna ? GO:0000027 ... G0SEG2 37921038
    861895 8pvl:LD (2.19) BS02 rna ? GO:0000027 ... G0SEG2 37921038
    861896 8pvl:LE (2.19) BS01 rna ? GO:0000027 ... G0S0D6 37921038
    861897 8pvl:LF (2.19) BS01 rna ? GO:0000463 ... G0SFL0 37921038
    861898 8pvl:LG (2.19) BS01 rna ? GO:0003723 ... G0SAJ9 37921038
    861899 8pvl:LG (2.19) BS02 rna ? GO:0003723 ... G0SAJ9 37921038
    861900 8pvl:LG (2.19) BS03 rna ? GO:0003723 ... G0SAJ9 37921038
    861901 8pvl:LH (2.19) BS01 rna N/A GO:0003735 ... N/A 37921038
    861902 8pvl:LJ (2.19) BS01 rna ? GO:0003735 ... G0SHQ2 37921038
    861903 8pvl:LJ (2.19) BS02 rna ? GO:0003735 ... G0SHQ2 37921038
    861904 8pvl:LK (2.19) BS01 rna ? GO:0000027 ... G0SGH8 37921038
    861905 8pvl:LL (2.19) BS01 rna ? GO:0003723 ... G0S992 37921038
    861906 8pvl:LL (2.19) BS02 rna ? GO:0003723 ... G0S992 37921038
    861907 8pvl:LM (2.19) BS01 rna ? GO:0003723 ... G0S1R0 37921038
    861908 8pvl:LN (2.19) BS01 rna ? GO:0002181 ... G0RZ88 37921038
    861909 8pvl:LN (2.19) BS02 rna ? GO:0002181 ... G0RZ88 37921038
    861910 8pvl:LO (2.19) BS01 rna ? GO:0003729 ... G0SH61 37921038
    861911 8pvl:LP (2.19) BS01 rna ? GO:0002181 ... G0SGY1 37921038
    861912 8pvl:LP (2.19) BS02 rna ? GO:0002181 ... G0SGY1 37921038
    861913 8pvl:LQ (2.19) BS01 rna ? GO:0003723 ... G0S9B5 37921038
    861914 8pvl:LR (2.19) BS01 rna ? GO:0003735 ... G0S9T3 37921038
    861915 8pvl:LS (2.19) BS01 rna ? GO:0003735 ... G0SCE2 37921038
    861916 8pvl:LT (2.19) BS01 rna ? GO:0003735 ... G0S0Z3 37921038
    861917 8pvl:LU (2.19) BS01 rna ? GO:0002181 ... G0SDS8 37921038
    861918 8pvl:LV (2.19) BS01 rna ? GO:0003735 ... G0SI44 37921038
    861919 8pvl:LX (2.19) BS01 rna ? GO:0003735 ... G0S507 37921038
    861920 8pvl:LX (2.19) BS02 rna ? GO:0003735 ... G0S507 37921038
    861921 8pvl:LY (2.19) BS01 rna ? GO:0003723 ... G0RYN9 37921038
    861922 8pvl:LY (2.19) BS02 rna ? GO:0003723 ... G0RYN9 37921038
    861923 8pvl:LZ (2.19) BS01 rna ? GO:0003735 ... G0RZE9 37921038
    861924 8pvl:La (2.19) BS01 rna N/A GO:0003735 ... N/A 37921038
    861925 8pvl:Lc (2.19) BS01 rna ? GO:0003723 ... G0SEI0 37921038
    861926 8pvl:Ld (2.19) BS01 rna ? GO:0002181 ... G0SD68 37921038
    861927 8pvl:Le (2.19) BS01 rna ? GO:0003735 ... G0S6V4 37921038
    861928 8pvl:Lf (2.19) BS01 rna ? GO:0003735 ... G0SCL3 37921038
    861929 8pvl:Lg (2.19) BS01 rna ? GO:0003735 ... G0SFN0 37921038
    861930 8pvl:Lg (2.19) BS02 ZN ? GO:0003735 ... G0SFN0 37921038
    861931 8pvl:Lh (2.19) BS01 rna 2.4.99.18 GO:0003735 ... G0S0D7 37921038
    861932 8pvl:Lh (2.19) BS02 rna 2.4.99.18 GO:0003735 ... G0S0D7 37921038
    861933 8pvl:Li (2.19) BS01 rna ? GO:0003735 ... G0SBN1 37921038
    861934 8pvl:Lj (2.19) BS01 rna ? GO:0003723 ... G0S101 37921038
    861935 8pvl:Lj (2.19) BS02 rna ? GO:0003723 ... G0S101 37921038
    861936 8pvl:Lj (2.19) BS03 ZN ? GO:0003723 ... G0S101 37921038
    861937 8pvl:Lk (2.19) BS01 rna N/A GO:0003735 ... N/A 37921038
    861938 8pvl:Ll (2.19) BS01 rna ? GO:0003735 ... Q2H9R2 37921038
    861939 8pvl:Ll (2.19) BS02 rna ? GO:0003735 ... Q2H9R2 37921038
    861940 8pvl:Lp (2.19) BS01 rna ? GO:0003735 ... G0S6B0 37921038
    861941 8pvl:Lp (2.19) BS02 ZN ? GO:0003735 ... G0S6B0 37921038
    861942 8pvl:Lq (2.19) BS01 rna ? GO:0003735 ... G0SHJ6 37921038
    861943 8pvm:A (1.38) BS01 402 1.12.7.2 GO:0005506 ... P29166 37983562
    861944 8pvm:A (1.38) BS02 SF4 1.12.7.2 GO:0005506 ... P29166 37983562
    861945 8pvm:A (1.38) BS03 SF4 1.12.7.2 GO:0005506 ... P29166 37983562
    861946 8pvm:A (1.38) BS04 SF4 1.12.7.2 GO:0005506 ... P29166 37983562
    861947 8pvm:A (1.38) BS05 SF4 1.12.7.2 GO:0005506 ... P29166 37983562
    861948 8pvm:A (1.38) BS06 FES 1.12.7.2 GO:0005506 ... P29166 37983562
    861949 8pvm:A (1.38) BS07 74C 1.12.7.2 GO:0005506 ... P29166 37983562
    861950 8pvm:A (1.38) BS08 MG 1.12.7.2 GO:0005506 ... P29166 37983562
    861951 8pvm:B (1.38) BS01 402 1.12.7.2 GO:0005506 ... P29166 37983562
    861952 8pvm:B (1.38) BS02 SF4 1.12.7.2 GO:0005506 ... P29166 37983562
    861953 8pvm:B (1.38) BS03 SF4 1.12.7.2 GO:0005506 ... P29166 37983562
    861954 8pvm:B (1.38) BS04 SF4 1.12.7.2 GO:0005506 ... P29166 37983562
    861955 8pvm:B (1.38) BS05 SF4 1.12.7.2 GO:0005506 ... P29166 37983562
    861956 8pvm:B (1.38) BS06 FES 1.12.7.2 GO:0005506 ... P29166 37983562
    861957 8pvm:B (1.38) BS07 74C 1.12.7.2 GO:0005506 ... P29166 37983562
    861958 8pvm:B (1.38) BS08 74C 1.12.7.2 GO:0005506 ... P29166 37983562
    861959 8pvm:B (1.38) BS09 MG 1.12.7.2 GO:0005506 ... P29166 37983562
    861960 8pvo:A (2.25) BS01 FW3 2.7.11.1 GO:0004672 ... P68400 39067440
    861961 8pvo:B (2.25) BS01 FW3 2.7.11.1 GO:0004672 ... P68400 39067440
    861962 8pvp:A (2.6) BS01 FWU 2.7.11.1 GO:0004672 ... P68400 39067440
    861963 8pvp:B (2.6) BS01 FWU 2.7.11.1 GO:0004672 ... P68400 39067440
    861964 8pvr:A (3.06) BS01 EUJ N/A GO:0006812 ... F7B113 40155618
    861965 8pvr:B (3.06) BS01 EUJ N/A GO:0006812 ... F7B113 40155618
    861966 8pvs:A (1.68) BS01 GLA 3.2.1.22
    3.2.1.n1
    3.2.1.n2
    GO:0004557 ... B2UNU8 38684911
    861967 8pvs:A (1.68) BS02 CA 3.2.1.22
    3.2.1.n1
    3.2.1.n2
    GO:0004557 ... B2UNU8 38684911
    861968 8pvs:A (1.68) BS03 CA 3.2.1.22
    3.2.1.n1
    3.2.1.n2
    GO:0004557 ... B2UNU8 38684911
    861969 8pvs:B (1.68) BS01 GLA 3.2.1.22
    3.2.1.n1
    3.2.1.n2
    GO:0004557 ... B2UNU8 38684911
    861970 8pvs:B (1.68) BS02 CA 3.2.1.22
    3.2.1.n1
    3.2.1.n2
    GO:0004557 ... B2UNU8 38684911
    861971 8pvs:B (1.68) BS03 CA 3.2.1.22
    3.2.1.n1
    3.2.1.n2
    GO:0004557 ... B2UNU8 38684911
    861972 8pvv:A (2.81) BS01 rna ? GO:0003676 ... O28951 38197228
    861973 8pvv:A (2.81) BS02 dna ? GO:0003676 ... O28951 38197228
    861974 8pvv:A (2.81) BS03 MG ? GO:0003676 ... O28951 38197228
    861975 8pvv:C (2.81) BS01 rna ? N/A A0A075WKW4 38197228
    861976 8pvv:C (2.81) BS02 dna ? N/A A0A075WKW4 38197228
    861977 8pvw:A (2.0) BS01 AP5 N/A GO:0004017 ... P69441 N/A
    861978 8pvx:A (3.55) BS01 peptide N/A GO:0000287 ... P68135 N/A
    861979 8pvx:A (3.55) BS02 ADP N/A GO:0000287 ... P68135 N/A
    861980 8pvx:B (3.55) BS01 peptide N/A GO:0000287 ... P68135 N/A
    861981 8pvx:B (3.55) BS02 ADP N/A GO:0000287 ... P68135 N/A
    861982 8pvx:C (3.55) BS01 peptide N/A GO:0000287 ... P68135 N/A
    861983 8pvx:C (3.55) BS02 ADP N/A GO:0000287 ... P68135 N/A
    861984 8pvx:D (3.55) BS01 peptide N/A GO:0000287 ... P68135 N/A
    861985 8pvx:D (3.55) BS02 ADP N/A GO:0000287 ... P68135 N/A
    861986 8pvx:E (3.55) BS01 peptide N/A GO:0000287 ... P68135 N/A
    861987 8pvx:E (3.55) BS02 ADP N/A GO:0000287 ... P68135 N/A
    861988 8pvy:A (3.02) BS01 ZN N/A GO:0000151 ... P46736 40097626
    861989 8pvy:C (3.02) BS01 ZN N/A GO:0000151 ... P46736 40097626
    861990 8pvy:C (3.02) BS02 G1V N/A GO:0000151 ... P46736 40097626
    861991 8pvy:D (3.02) BS01 G1V N/A N/A Q15018 40097626
    861992 8pvy:H (3.02) BS01 G1V N/A N/A Q15018 40097626
    861993 8pvy:I (3.02) BS01 ZN N/A GO:0000151 ... P46736 40097626
    861994 8pvy:I (3.02) BS02 G1V N/A GO:0000151 ... P46736 40097626
    861995 8pw0:A (2.2) BS01 dna ? GO:0003677 ... Q9RRF3 38652591
    861996 8pw0:A (2.2) BS02 MN ? GO:0003677 ... Q9RRF3 38652591
    861997 8pw0:A (2.2) BS03 MN ? GO:0003677 ... Q9RRF3 38652591
    861998 8pw0:A (2.2) BS04 MN ? GO:0003677 ... Q9RRF3 38652591
    861999 8pw0:A (2.2) BS05 MN ? GO:0003677 ... Q9RRF3 38652591
    862000 8pw1:A (2.2) BS01 GKO 3.4.19.12 GO:0004197 ... P09936 38239128

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).