SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    862201 8qrk:M (6.69) BS01 rna N/A GO:0003735 ... Q9Y3D3 38969660
    862202 8qrk:N (6.69) BS01 rna N/A GO:0003735 ... Q9Y2R5 38969660
    862203 8qrk:O (6.69) BS01 rna N/A GO:0003735 ... Q9Y676 38969660
    862204 8qrk:O (6.69) BS02 ZN N/A GO:0003735 ... Q9Y676 38969660
    862205 8qrk:P (6.69) BS01 rna N/A GO:0003735 ... Q9Y3D5 38969660
    862206 8qrk:P (6.69) BS02 FES N/A GO:0003735 ... Q9Y3D5 38969660
    862207 8qrk:Q (6.69) BS01 rna N/A GO:0003723 ... P82921 38969660
    862208 8qrk:S (6.69) BS01 rna N/A GO:0003723 ... Q9Y3D9 38969660
    862209 8qrk:T (6.69) BS01 rna N/A GO:0003735 ... P82663 38969660
    862210 8qrk:T (6.69) BS02 FES N/A GO:0003735 ... P82663 38969660
    862211 8qrk:U (6.69) BS01 rna N/A GO:0003723 ... Q9BYN8 38969660
    862212 8qrk:V (6.69) BS01 rna N/A GO:0000049 ... Q92552 38969660
    862213 8qrk:X (6.69) BS01 rna N/A GO:0003723 ... P51398 38969660
    862214 8qrk:X (6.69) BS02 ATP N/A GO:0003723 ... P51398 38969660
    862215 8qrk:X (6.69) BS03 GNP N/A GO:0003723 ... P51398 38969660
    862216 8qrk:Z (6.69) BS01 rna N/A GO:0003735 ... Q9Y291 38969660
    862217 8qrl:0 (3.34) BS01 rna N/A GO:0003735 ... P82930 38969660
    862218 8qrl:3 (3.34) BS01 rna N/A GO:0005515 ... Q9NWT8 38969660
    862219 8qrl:8 (3.34) BS01 rna N/A GO:0005515 ... A6NJ78 38969660
    862220 8qrl:8 (3.34) BS02 SAH N/A GO:0005515 ... A6NJ78 38969660
    862221 8qrl:B (3.34) BS01 rna N/A GO:0003735 ... Q9Y399 38969660
    862222 8qrl:B (3.34) BS02 MG N/A GO:0003735 ... Q9Y399 38969660
    862223 8qrl:C (3.34) BS01 rna N/A GO:0003723 ... Q96EL2 38969660
    862224 8qrl:D (3.34) BS01 rna N/A GO:0003723 ... P82675 38969660
    862225 8qrl:E (3.34) BS01 rna N/A GO:0003735 ... P82932 38969660
    862226 8qrl:E (3.34) BS02 FES N/A GO:0003735 ... P82932 38969660
    862227 8qrl:F (3.34) BS01 rna N/A GO:0000028 ... Q9Y2R9 38969660
    862228 8qrl:G (3.34) BS01 rna N/A GO:0003723 ... P82933 38969660
    862229 8qrl:H (3.34) BS01 rna N/A GO:0005739 ... P82664 38969660
    862230 8qrl:I (3.34) BS01 rna N/A GO:0003723 ... P82912 38969660
    862231 8qrl:J (3.34) BS01 rna N/A GO:0003723 ... O15235 38969660
    862232 8qrl:K (3.34) BS01 rna N/A GO:0003723 ... O60783 38969660
    862233 8qrl:L (3.34) BS01 rna N/A GO:0003723 ... P82914 38969660
    862234 8qrl:L (3.34) BS02 NAD N/A GO:0003723 ... P82914 38969660
    862235 8qrl:M (3.34) BS01 rna N/A GO:0003735 ... Q9Y3D3 38969660
    862236 8qrl:N (3.34) BS01 rna N/A GO:0003735 ... Q9Y2R5 38969660
    862237 8qrl:O (3.34) BS01 rna N/A GO:0003735 ... Q9Y676 38969660
    862238 8qrl:O (3.34) BS02 ZN N/A GO:0003735 ... Q9Y676 38969660
    862239 8qrl:P (3.34) BS01 rna N/A GO:0003735 ... Q9Y3D5 38969660
    862240 8qrl:P (3.34) BS02 FES N/A GO:0003735 ... Q9Y3D5 38969660
    862241 8qrl:Q (3.34) BS01 rna N/A GO:0003723 ... P82921 38969660
    862242 8qrl:S (3.34) BS01 rna N/A GO:0003723 ... Q9Y3D9 38969660
    862243 8qrl:T (3.34) BS01 rna N/A GO:0003735 ... P82663 38969660
    862244 8qrl:T (3.34) BS02 FES N/A GO:0003735 ... P82663 38969660
    862245 8qrl:U (3.34) BS01 rna N/A GO:0003723 ... Q9BYN8 38969660
    862246 8qrl:V (3.34) BS01 rna N/A GO:0000049 ... Q92552 38969660
    862247 8qrl:X (3.34) BS01 rna N/A GO:0003723 ... P51398 38969660
    862248 8qrl:X (3.34) BS02 ATP N/A GO:0003723 ... P51398 38969660
    862249 8qrl:X (3.34) BS03 GDP N/A GO:0003723 ... P51398 38969660
    862250 8qrl:Z (3.34) BS01 rna N/A GO:0003735 ... Q9Y291 38969660
    862251 8qrm:0 (3.05) BS01 rna N/A GO:0003735 ... P82930 38969660
    862252 8qrm:2 (3.05) BS01 rna N/A GO:0001650 ... Q96BP2 38969660
    862253 8qrm:3 (3.05) BS01 rna N/A GO:0005515 ... Q9NWT8 38969660
    862254 8qrm:8 (3.05) BS01 rna N/A GO:0003743 ... Q9H2K0 38969660
    862255 8qrm:B (3.05) BS01 rna N/A GO:0003735 ... Q9Y399 38969660
    862256 8qrm:B (3.05) BS02 MG N/A GO:0003735 ... Q9Y399 38969660
    862257 8qrm:C (3.05) BS01 rna N/A GO:0003723 ... Q96EL2 38969660
    862258 8qrm:D (3.05) BS01 rna N/A GO:0003723 ... P82675 38969660
    862259 8qrm:E (3.05) BS01 rna N/A GO:0003735 ... P82932 38969660
    862260 8qrm:F (3.05) BS01 rna N/A GO:0000028 ... Q9Y2R9 38969660
    862261 8qrm:G (3.05) BS01 rna N/A GO:0003723 ... P82933 38969660
    862262 8qrm:H (3.05) BS01 rna N/A GO:0005739 ... P82664 38969660
    862263 8qrm:I (3.05) BS01 rna N/A GO:0003723 ... P82912 38969660
    862264 8qrm:J (3.05) BS01 rna N/A GO:0003723 ... O15235 38969660
    862265 8qrm:K (3.05) BS01 rna N/A GO:0003723 ... O60783 38969660
    862266 8qrm:L (3.05) BS01 rna N/A GO:0003723 ... P82914 38969660
    862267 8qrm:L (3.05) BS02 NAD N/A GO:0003723 ... P82914 38969660
    862268 8qrm:M (3.05) BS01 rna N/A GO:0003735 ... Q9Y3D3 38969660
    862269 8qrm:N (3.05) BS01 rna N/A GO:0003735 ... Q9Y2R5 38969660
    862270 8qrm:O (3.05) BS01 rna N/A GO:0003735 ... Q9Y676 38969660
    862271 8qrm:O (3.05) BS02 ZN N/A GO:0003735 ... Q9Y676 38969660
    862272 8qrm:P (3.05) BS01 rna N/A GO:0003735 ... Q9Y3D5 38969660
    862273 8qrm:P (3.05) BS02 FES N/A GO:0003735 ... Q9Y3D5 38969660
    862274 8qrm:Q (3.05) BS01 rna N/A GO:0003723 ... P82921 38969660
    862275 8qrm:S (3.05) BS01 rna N/A GO:0003723 ... Q9Y3D9 38969660
    862276 8qrm:T (3.05) BS01 rna N/A GO:0003735 ... P82663 38969660
    862277 8qrm:T (3.05) BS02 FES N/A GO:0003735 ... P82663 38969660
    862278 8qrm:U (3.05) BS01 rna N/A GO:0003723 ... Q9BYN8 38969660
    862279 8qrm:V (3.05) BS01 rna N/A GO:0000049 ... Q92552 38969660
    862280 8qrm:X (3.05) BS01 rna N/A GO:0003723 ... P51398 38969660
    862281 8qrm:X (3.05) BS02 ATP N/A GO:0003723 ... P51398 38969660
    862282 8qrm:X (3.05) BS03 GNP N/A GO:0003723 ... P51398 38969660
    862283 8qrm:Z (3.05) BS01 rna N/A GO:0003735 ... Q9Y291 38969660
    862284 8qrn:0 (2.98) BS01 rna N/A GO:0003735 ... P82930 38969660
    862285 8qrn:2 (2.98) BS01 rna N/A GO:0001650 ... Q96BP2 38969660
    862286 8qrn:3 (2.98) BS01 rna N/A GO:0005515 ... Q9NWT8 38969660
    862287 8qrn:7 (2.98) BS01 rna N/A GO:0003723 ... P46199 38969660
    862288 8qrn:7 (2.98) BS02 rna N/A GO:0003723 ... P46199 38969660
    862289 8qrn:7 (2.98) BS03 FME N/A GO:0003723 ... P46199 38969660
    862290 8qrn:7 (2.98) BS04 GTP N/A GO:0003723 ... P46199 38969660
    862291 8qrn:7 (2.98) BS05 MG N/A GO:0003723 ... P46199 38969660
    862292 8qrn:B (2.98) BS01 rna N/A GO:0003735 ... Q9Y399 38969660
    862293 8qrn:B (2.98) BS02 MG N/A GO:0003735 ... Q9Y399 38969660
    862294 8qrn:C (2.98) BS01 rna N/A GO:0003723 ... Q96EL2 38969660
    862295 8qrn:D (2.98) BS01 rna N/A GO:0003723 ... P82675 38969660
    862296 8qrn:E (2.98) BS01 rna N/A GO:0003735 ... P82932 38969660
    862297 8qrn:F (2.98) BS01 rna N/A GO:0000028 ... Q9Y2R9 38969660
    862298 8qrn:G (2.98) BS01 rna N/A GO:0003723 ... P82933 38969660
    862299 8qrn:H (2.98) BS01 rna N/A GO:0005739 ... P82664 38969660
    862300 8qrn:I (2.98) BS01 rna N/A GO:0003723 ... P82912 38969660
    862301 8qrn:J (2.98) BS01 rna N/A GO:0003723 ... O15235 38969660
    862302 8qrn:K (2.98) BS01 rna N/A GO:0003723 ... O60783 38969660
    862303 8qrn:L (2.98) BS01 rna N/A GO:0003723 ... P82914 38969660
    862304 8qrn:L (2.98) BS02 NAD N/A GO:0003723 ... P82914 38969660
    862305 8qrn:M (2.98) BS01 rna N/A GO:0003735 ... Q9Y3D3 38969660
    862306 8qrn:N (2.98) BS01 rna N/A GO:0003735 ... Q9Y2R5 38969660
    862307 8qrn:O (2.98) BS01 rna N/A GO:0003735 ... Q9Y676 38969660
    862308 8qrn:O (2.98) BS02 ZN N/A GO:0003735 ... Q9Y676 38969660
    862309 8qrn:P (2.98) BS01 rna N/A GO:0003735 ... Q9Y3D5 38969660
    862310 8qrn:P (2.98) BS02 FES N/A GO:0003735 ... Q9Y3D5 38969660
    862311 8qrn:Q (2.98) BS01 rna N/A GO:0003723 ... P82921 38969660
    862312 8qrn:S (2.98) BS01 rna N/A GO:0003723 ... Q9Y3D9 38969660
    862313 8qrn:T (2.98) BS01 rna N/A GO:0003735 ... P82663 38969660
    862314 8qrn:T (2.98) BS02 FES N/A GO:0003735 ... P82663 38969660
    862315 8qrn:U (2.98) BS01 rna N/A GO:0003723 ... Q9BYN8 38969660
    862316 8qrn:V (2.98) BS01 rna N/A GO:0000049 ... Q92552 38969660
    862317 8qrn:X (2.98) BS01 rna N/A GO:0003723 ... P51398 38969660
    862318 8qrn:X (2.98) BS02 ATP N/A GO:0003723 ... P51398 38969660
    862319 8qrn:X (2.98) BS03 GNP N/A GO:0003723 ... P51398 38969660
    862320 8qrn:Z (2.98) BS01 rna N/A GO:0003735 ... Q9Y291 38969660
    862321 8qro:A (2.6) BS01 GLN N/A GO:0001618 ... Q15758 39095408
    862322 8qro:B (2.6) BS01 GLN N/A GO:0001618 ... Q15758 39095408
    862323 8qro:C (2.6) BS01 GLN N/A GO:0001618 ... Q15758 39095408
    862324 8qrp:B (2.7) BS01 GLN N/A GO:0001618 ... Q15758 39095408
    862325 8qrq:B (2.74) BS01 GLN N/A GO:0001618 ... Q15758 39095408
    862326 8qrr:B (2.78) BS01 GLN N/A GO:0001618 ... Q15758 39095408
    862327 8qrs:B (2.86) BS01 GLN N/A GO:0001618 ... Q15758 39095408
    862328 8qrt:AAA (2.0) BS01 WP2 N/A GO:0006633 ... N/A 38334233
    862329 8qrt:BBB (2.0) BS01 WP2 N/A GO:0006633 ... N/A 38334233
    862330 8qrt:CCC (2.0) BS01 WP2 N/A GO:0006633 ... N/A 38334233
    862331 8qrt:DDD (2.0) BS01 WP2 N/A GO:0006633 ... N/A 38334233
    862332 8qru:B (2.9) BS01 GLN N/A GO:0001618 ... Q15758 39095408
    862333 8qs0:AAA (2.3) BS01 WOX N/A GO:0006633 ... N/A 38334233
    862334 8qs0:BBB (2.3) BS01 WOX N/A GO:0006633 ... N/A 38334233
    862335 8qs0:CCC (2.3) BS01 WOX N/A GO:0006633 ... N/A 38334233
    862336 8qs0:DDD (2.3) BS01 WOX N/A GO:0006633 ... N/A 38334233
    862337 8qsi:PM (2.75) BS01 MG N/A N/A A0A410N6S3 N/A
    862338 8qsi:PN (2.75) BS01 MG N/A N/A A0A410N6S3 N/A
    862339 8qsi:PO (2.75) BS01 MG N/A N/A A0A410N6S3 N/A
    862340 8qsi:PP (2.75) BS01 MG N/A N/A A0A410N6S3 N/A
    862341 8qsi:PQ (2.75) BS01 MG N/A N/A A0A410N6S3 N/A
    862342 8qsi:PR (2.75) BS01 MG N/A N/A A0A410N6S3 N/A
    862343 8qsi:PS (2.75) BS01 MG N/A N/A A0A410N6S3 N/A
    862344 8qsi:PT (2.75) BS01 MG N/A N/A A0A410N6S3 N/A
    862345 8qsi:PU (2.75) BS01 MG N/A N/A A0A410N6S3 N/A
    862346 8qsi:PV (2.75) BS01 MG N/A N/A A0A410N6S3 N/A
    862347 8qsi:PW (2.75) BS01 MG N/A N/A A0A410N6S3 N/A
    862348 8qsi:PX (2.75) BS01 MG N/A N/A A0A410N6S3 N/A
    862349 8qsj:0 (3.0) BS01 rna ? GO:0003723 ... Q9BYC8 38042949
    862350 8qsj:0 (3.0) BS02 ZN ? GO:0003723 ... Q9BYC8 38042949
    862351 8qsj:1 (3.0) BS01 rna ? GO:0003735 ... O75394 38042949
    862352 8qsj:2 (3.0) BS01 rna ? GO:0003735 ... Q9BQ48 38042949
    862353 8qsj:3 (3.0) BS01 rna ? GO:0003735 ... Q9NZE8 38042949
    862354 8qsj:4 (3.0) BS01 rna ? GO:0003735 ... Q9P0J6 38042949
    862355 8qsj:4 (3.0) BS02 ZN ? GO:0003735 ... Q9P0J6 38042949
    862356 8qsj:5 (3.0) BS01 rna ? GO:0003723 ... Q9BZE1 38042949
    862357 8qsj:6 (3.0) BS01 rna ? GO:0005515 ... Q96DV4 38042949
    862358 8qsj:6 (3.0) BS02 rna ? GO:0005515 ... Q96DV4 38042949
    862359 8qsj:8 (3.0) BS01 rna ? GO:0003723 ... Q9NQ50 38042949
    862360 8qsj:9 (3.0) BS01 rna ? GO:0003723 ... Q8IXM3 38042949
    862361 8qsj:D (3.0) BS01 rna ? GO:0003723 ... Q5T653 38042949
    862362 8qsj:E (3.0) BS01 rna ? GO:0003723 ... P09001 38042949
    862363 8qsj:F (3.0) BS01 rna ? GO:0003723 ... Q9BYD3 38042949
    862364 8qsj:H (3.0) BS01 rna ? GO:0003723 ... Q9BYD2 38042949
    862365 8qsj:I (3.0) BS01 rna ? GO:0003723 ... Q7Z7H8 38042949
    862366 8qsj:I (3.0) BS02 peptide ? GO:0003723 ... Q7Z7H8 38042949
    862367 8qsj:J (3.0) BS01 rna ? GO:0003723 ... Q9Y3B7 38042949
    862368 8qsj:K (3.0) BS01 rna ? GO:0003723 ... Q9BYD1 38042949
    862369 8qsj:L (3.0) BS01 rna ? GO:0003723 ... Q6P1L8 38042949
    862370 8qsj:M (3.0) BS01 rna ? GO:0003723 ... Q9P015 38042949
    862371 8qsj:M (3.0) BS02 MG ? GO:0003723 ... Q9P015 38042949
    862372 8qsj:N (3.0) BS01 rna ? GO:0003735 ... Q9NX20 38042949
    862373 8qsj:N (3.0) BS02 peptide ? GO:0003735 ... Q9NX20 38042949
    862374 8qsj:O (3.0) BS01 rna ? GO:0003735 ... Q9NRX2 38042949
    862375 8qsj:P (3.0) BS01 rna ? GO:0003723 ... Q9H0U6 38042949
    862376 8qsj:P (3.0) BS02 rna ? GO:0003723 ... Q9H0U6 38042949
    862377 8qsj:Q (3.0) BS01 rna ? GO:0003735 ... P49406 38042949
    862378 8qsj:R (3.0) BS01 rna ? GO:0003723 ... Q9BYC9 38042949
    862379 8qsj:S (3.0) BS01 rna ? GO:0003723 ... Q7Z2W9 38042949
    862380 8qsj:T (3.0) BS01 rna ? GO:0003723 ... Q9NWU5 38042949
    862381 8qsj:U (3.0) BS01 rna ? GO:0001650 ... Q16540 38042949
    862382 8qsj:V (3.0) BS01 rna ? GO:0003723 ... Q96A35 38042949
    862383 8qsj:W (3.0) BS01 rna ? GO:0003723 ... Q9P0M9 38042949
    862384 8qsj:X (3.0) BS01 rna ? GO:0003723 ... Q13084 38042949
    862385 8qsj:Y (3.0) BS01 rna ? GO:0003735 ... Q9HD33 38042949
    862386 8qsj:Z (3.0) BS01 rna ? GO:0003735 ... Q8TCC3 38042949
    862387 8qsj:a (3.0) BS01 rna ? GO:0003723 ... Q9Y6G3 38042949
    862388 8qsj:b (3.0) BS01 rna ? GO:0003723 ... Q8N983 38042949
    862389 8qsj:c (3.0) BS01 rna 3.1.26.- GO:0003723 ... Q9H9J2 38042949
    862390 8qsj:d (3.0) BS01 rna ? GO:0003723 ... Q9BRJ2 38042949
    862391 8qsj:e (3.0) BS01 rna ? GO:0003735 ... Q9H2W6 38042949
    862392 8qsj:f (3.0) BS01 rna ? GO:0005515 ... Q96GC5 38042949
    862393 8qsj:f (3.0) BS02 rna ? GO:0005515 ... Q96GC5 38042949
    862394 8qsj:g (3.0) BS01 rna ? GO:0003735 ... Q13405 38042949
    862395 8qsj:i (3.0) BS01 rna ? GO:0003735 ... Q4U2R6 38042949
    862396 8qsj:j (3.0) BS01 rna ? GO:0003735 ... Q86TS9 38042949
    862397 8qsj:o (3.0) BS01 rna ? GO:0003735 ... Q9BQC6 38042949
    862398 8qsj:q (3.0) BS01 rna ? GO:0005515 ... Q8TAE8 38042949
    862399 8qsj:r (3.0) BS01 rna ? GO:0003735 ... Q9NVS2 38042949
    862400 8qsj:r (3.0) BS02 FES ? GO:0003735 ... Q9NVS2 38042949

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).