SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    863601 8qz8:B (3.13) BS03 G2P ? GO:0001172 ... A0A1Y9SHW4 38066000
    863602 8qz8:B (3.13) BS04 MG ? GO:0001172 ... A0A1Y9SHW4 38066000
    863603 8qz8:C (3.13) BS01 rna ? N/A A0A7G3S745 38066000
    863604 8qz8:C (3.13) BS02 ZN ? N/A A0A7G3S745 38066000
    863605 8qzc:A (3.29) BS01 CA ? GO:0005229 ... Q8BHY3 37984335
    863606 8qzc:A (3.29) BS02 CA ? GO:0005229 ... Q8BHY3 37984335
    863607 8qzc:B (3.29) BS01 CA ? GO:0005229 ... Q8BHY3 37984335
    863608 8qzc:B (3.29) BS02 CA ? GO:0005229 ... Q8BHY3 37984335
    863609 8qzd:A (1.3) BS01 XDZ 3.1.3.76
    3.3.2.10
    GO:0003824 ... P34913 38470246
    863610 8qze:A (1.87) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    863611 8qze:B (1.87) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    863612 8qzf:A (1.8) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    863613 8qzf:B (1.8) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    863614 8qzi:A (2.5) BS01 COA N/A GO:0000287 ... O33336 N/A
    863615 8qzi:A (2.5) BS02 MN N/A GO:0000287 ... O33336 N/A
    863616 8qzi:B (2.5) BS01 COA N/A GO:0000287 ... O33336 N/A
    863617 8qzi:B (2.5) BS02 MN N/A GO:0000287 ... O33336 N/A
    863618 8qzi:C (2.5) BS01 COA N/A GO:0000287 ... O33336 N/A
    863619 8qzi:C (2.5) BS02 MN N/A GO:0000287 ... O33336 N/A
    863620 8qzi:D (2.5) BS01 COA N/A GO:0000287 ... O33336 N/A
    863621 8qzi:D (2.5) BS02 MN N/A GO:0000287 ... O33336 N/A
    863622 8qzi:E (2.5) BS01 COA N/A GO:0031177 ... P96202 N/A
    863623 8qzj:A (2.0) BS01 A3P N/A GO:0000287 ... O33336 N/A
    863624 8qzj:A (2.0) BS02 MN N/A GO:0000287 ... O33336 N/A
    863625 8qzj:B (2.0) BS01 A3P N/A GO:0000287 ... O33336 N/A
    863626 8qzj:C (2.0) BS01 A3P N/A GO:0000287 ... O33336 N/A
    863627 8qzj:D (2.0) BS01 A3P N/A GO:0000287 ... O33336 N/A
    863628 8qzj:D (2.0) BS02 MN N/A GO:0000287 ... O33336 N/A
    863629 8qzl:A (3.42) BS01 WQW N/A N/A W1DJX9 N/A
    863630 8qzl:C (3.42) BS01 WQW N/A N/A W1DJX9 N/A
    863631 8qzm:A (3.1) BS01 dna N/A GO:0000786 ... A0A7K7T3V7 39528729
    863632 8qzm:A (3.1) BS02 dna N/A GO:0000786 ... A0A7K7T3V7 39528729
    863633 8qzm:B (3.1) BS01 dna N/A GO:0000781 ... P62805 39528729
    863634 8qzm:B (3.1) BS02 dna N/A GO:0000781 ... P62805 39528729
    863635 8qzm:C (3.1) BS01 dna N/A GO:0000786 ... P0C0S8 39528729
    863636 8qzm:C (3.1) BS02 dna N/A GO:0000786 ... P0C0S8 39528729
    863637 8qzm:D (3.1) BS01 dna N/A GO:0000786 ... P62807 39528729
    863638 8qzm:D (3.1) BS02 dna N/A GO:0000786 ... P62807 39528729
    863639 8qzm:E (3.1) BS01 dna N/A GO:0000786 ... A0A7K7T3V7 39528729
    863640 8qzm:E (3.1) BS02 dna N/A GO:0000786 ... A0A7K7T3V7 39528729
    863641 8qzm:E (3.1) BS03 peptide N/A GO:0000786 ... A0A7K7T3V7 39528729
    863642 8qzm:F (3.1) BS01 dna N/A GO:0000781 ... P62805 39528729
    863643 8qzm:F (3.1) BS02 dna N/A GO:0000781 ... P62805 39528729
    863644 8qzm:G (3.1) BS01 dna N/A GO:0000786 ... P0C0S8 39528729
    863645 8qzm:G (3.1) BS02 dna N/A GO:0000786 ... P0C0S8 39528729
    863646 8qzm:G (3.1) BS03 peptide N/A GO:0000786 ... P0C0S8 39528729
    863647 8qzm:H (3.1) BS01 dna N/A GO:0000786 ... P62807 39528729
    863648 8qzm:H (3.1) BS02 dna N/A GO:0000786 ... P62807 39528729
    863649 8qzm:H (3.1) BS03 peptide N/A GO:0000786 ... P62807 39528729
    863650 8qzq:A (3.23) BS01 XE9 N/A GO:0005515 ... P31224 N/A
    863651 8qzq:B (3.23) BS01 WR6 N/A GO:0005515 ... P31224 N/A
    863652 8qzs:21 (4.1) BS01 rna ? GO:0000243 ... P62314 38778104
    863653 8qzs:22 (4.1) BS01 rna ? GO:0000245 ... P62316 38778104
    863654 8qzs:23 (4.1) BS01 rna ? GO:0000243 ... P62318 38778104
    863655 8qzs:2B (4.1) BS01 rna ? GO:0000398 ... P08579 38778104
    863656 8qzs:2b (4.1) BS01 rna ? GO:0000387 ... P14678 38778104
    863657 8qzs:2e (4.1) BS01 rna ? GO:0000245 ... P62304 38778104
    863658 8qzs:2f (4.1) BS01 rna ? GO:0000387 ... P62306 38778104
    863659 8qzs:2g (4.1) BS01 rna ? GO:0000245 ... P62308 38778104
    863660 8qzs:42 (4.1) BS01 rna ? GO:0000245 ... P62316 38778104
    863661 8qzs:43 (4.1) BS01 rna ? GO:0000243 ... P62318 38778104
    863662 8qzs:4e (4.1) BS01 rna ? GO:0000245 ... P62304 38778104
    863663 8qzs:4f (4.1) BS01 rna ? GO:0000387 ... P62306 38778104
    863664 8qzs:4g (4.1) BS01 rna ? GO:0000245 ... P62308 38778104
    863665 8qzs:51 (4.1) BS01 rna ? GO:0000243 ... P62314 38778104
    863666 8qzs:52 (4.1) BS01 rna ? GO:0000245 ... P62316 38778104
    863667 8qzs:53 (4.1) BS01 rna ? GO:0000243 ... P62318 38778104
    863668 8qzs:5b (4.1) BS01 rna ? GO:0000387 ... P14678 38778104
    863669 8qzs:5e (4.1) BS01 rna ? GO:0000245 ... P62304 38778104
    863670 8qzs:5f (4.1) BS01 rna ? GO:0000387 ... P62306 38778104
    863671 8qzs:5g (4.1) BS01 rna ? GO:0000245 ... P62308 38778104
    863672 8qzs:7 (4.1) BS01 rna ? GO:0000389 ... Q15459 38778104
    863673 8qzs:A (4.1) BS01 rna ? GO:0000244 ... Q6P2Q9 38778104
    863674 8qzs:A (4.1) BS02 rna ? GO:0000244 ... Q6P2Q9 38778104
    863675 8qzs:A (4.1) BS03 rna ? GO:0000244 ... Q6P2Q9 38778104
    863676 8qzs:B (4.1) BS01 rna 3.6.4.13 GO:0000354 ... O75643 38778104
    863677 8qzs:B1 (4.1) BS01 rna ? GO:0000245 ... O75533 38778104
    863678 8qzs:B1 (4.1) BS02 rna ? GO:0000245 ... O75533 38778104
    863679 8qzs:B6 (4.1) BS01 rna ? GO:0000398 ... Q9Y3B4 38778104
    863680 8qzs:D (4.1) BS01 rna ? GO:0000245 ... P83876 38778104
    863681 8qzs:D (4.1) BS02 rna ? GO:0000245 ... P83876 38778104
    863682 8qzs:F (4.1) BS01 rna ? GO:0000375 ... O43172 38778104
    863683 8qzs:J (4.1) BS01 rna ? GO:0000244 ... O43395 38778104
    863684 8qzs:J (4.1) BS02 rna ? GO:0000244 ... O43395 38778104
    863685 8qzs:L (4.1) BS01 rna ? GO:0000244 ... Q8WWY3 38778104
    863686 8qzs:L (4.1) BS02 rna ? GO:0000244 ... Q8WWY3 38778104
    863687 8qzs:M (4.1) BS01 rna ? GO:0000398 ... P55769 38778104
    863688 8qzs:N (4.1) BS01 rna ? GO:0000244 ... O94906 38778104
    863689 8qzs:X (4.1) BS01 rna ? GO:0000398 ... O75554 38778104
    863690 8qzs:X (4.1) BS02 rna ? GO:0000398 ... O75554 38778104
    863691 8qzs:r (4.1) BS01 rna ? GO:0000398 ... Q96NC0 38778104
    863692 8qzt:A (3.52) BS01 XE9 N/A GO:0005515 ... P31224 N/A
    863693 8qzt:C (3.52) BS01 XE9 N/A GO:0005515 ... P31224 N/A
    863694 8qzw:A (1.68) BS01 NAD N/A GO:0000166 ... F1AQF9 38923395
    863695 8qzx:A (3.01) BS01 NAD N/A GO:0000166 ... F1AQF9 38923395
    863696 8qzx:A (3.01) BS02 NAD N/A GO:0000166 ... F1AQF9 38923395
    863697 8qzx:B (3.01) BS01 NAD N/A GO:0000166 ... F1AQF9 38923395
    863698 8qzx:B (3.01) BS02 NAD N/A GO:0000166 ... F1AQF9 38923395
    863699 8qzx:C (3.01) BS01 NAD N/A GO:0000166 ... F1AQF9 38923395
    863700 8qzx:C (3.01) BS02 NAD N/A GO:0000166 ... F1AQF9 38923395
    863701 8qzx:D (3.01) BS01 NAD N/A GO:0000166 ... F1AQF9 38923395
    863702 8qzx:D (3.01) BS02 NAD N/A GO:0000166 ... F1AQF9 38923395
    863703 8qzz:A (3.35) BS01 peptide 3.6.5.3 GO:0000049 ... P41091 38547060
    863704 8qzz:A (3.35) BS02 GNP 3.6.5.3 GO:0000049 ... P41091 38547060
    863705 8r02:B (2.5) BS01 XFZ ? GO:0005515 ... Q9UBQ0 38487369
    863706 8r02:D (2.5) BS01 XFZ ? GO:0015031 ... Q96QK1 38487369
    863707 8r03:A (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    863708 8r03:B (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    863709 8r03:C (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    863710 8r03:D (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    863711 8r03:E (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    863712 8r03:F (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    863713 8r03:G (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    863714 8r03:H (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    863715 8r03:I (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    863716 8r03:J (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    863717 8r03:K (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    863718 8r03:L (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    863719 8r03:M (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    863720 8r03:N (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    863721 8r04:A (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    863722 8r04:B (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    863723 8r04:C (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    863724 8r04:D (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    863725 8r04:E (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    863726 8r04:F (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    863727 8r04:G (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    863728 8r04:H (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    863729 8r04:I (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    863730 8r04:J (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    863731 8r04:K (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    863732 8r04:L (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    863733 8r04:M (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    863734 8r04:N (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    863735 8r05:A (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    863736 8r05:B (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    863737 8r05:C (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    863738 8r05:D (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    863739 8r05:E (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    863740 8r05:F (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    863741 8r05:G (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    863742 8r05:H (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    863743 8r05:I (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    863744 8r05:J (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    863745 8r05:K (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    863746 8r05:L (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    863747 8r05:M (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    863748 8r05:N (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    863749 8r06:A (1.7) BS01 PO8 3.2.1.45 GO:0004348 ... F6BL85 28937220
    863750 8r06:A (1.7) BS02 CA 3.2.1.45 GO:0004348 ... F6BL85 28937220
    863751 8r08:11 (6.1) BS01 rna ? GO:0000243 ... P62314 38778104
    863752 8r08:12 (6.1) BS01 rna ? GO:0000245 ... P62316 38778104
    863753 8r08:13 (6.1) BS01 rna ? GO:0000243 ... P62318 38778104
    863754 8r08:1K (6.1) BS01 rna ? GO:0000398 ... P08621 38778104
    863755 8r08:1b (6.1) BS01 rna ? GO:0000387 ... P14678 38778104
    863756 8r08:1e (6.1) BS01 rna ? GO:0000245 ... P62304 38778104
    863757 8r08:1f (6.1) BS01 rna ? GO:0000387 ... P62306 38778104
    863758 8r08:1g (6.1) BS01 rna ? GO:0000245 ... P62308 38778104
    863759 8r08:21 (6.1) BS01 rna ? GO:0000243 ... P62314 38778104
    863760 8r08:22 (6.1) BS01 rna ? GO:0000245 ... P62316 38778104
    863761 8r08:23 (6.1) BS01 rna ? GO:0000243 ... P62318 38778104
    863762 8r08:2B (6.1) BS01 rna ? GO:0000398 ... P08579 38778104
    863763 8r08:2e (6.1) BS01 rna ? GO:0000245 ... P62304 38778104
    863764 8r08:2f (6.1) BS01 rna ? GO:0000387 ... P62306 38778104
    863765 8r08:2g (6.1) BS01 rna ? GO:0000245 ... P62308 38778104
    863766 8r08:41 (6.1) BS01 peptide ? GO:0000243 ... P62314 38778104
    863767 8r08:41 (6.1) BS02 rna ? GO:0000243 ... P62314 38778104
    863768 8r08:42 (6.1) BS01 peptide ? GO:0000245 ... P62316 38778104
    863769 8r08:42 (6.1) BS02 rna ? GO:0000245 ... P62316 38778104
    863770 8r08:43 (6.1) BS01 rna ? GO:0000243 ... P62318 38778104
    863771 8r08:4b (6.1) BS01 rna ? GO:0000387 ... P14678 38778104
    863772 8r08:4e (6.1) BS01 rna ? GO:0000245 ... P62304 38778104
    863773 8r08:4f (6.1) BS01 rna ? GO:0000387 ... P62306 38778104
    863774 8r08:4g (6.1) BS01 rna ? GO:0000245 ... P62308 38778104
    863775 8r08:51 (6.1) BS01 rna ? GO:0000243 ... P62314 38778104
    863776 8r08:52 (6.1) BS01 rna ? GO:0000245 ... P62316 38778104
    863777 8r08:5b (6.1) BS01 rna ? GO:0000387 ... P14678 38778104
    863778 8r08:5f (6.1) BS01 rna ? GO:0000387 ... P62306 38778104
    863779 8r08:5g (6.1) BS01 rna ? GO:0000245 ... P62308 38778104
    863780 8r08:63 (6.1) BS01 rna ? GO:0000398 ... P62310 38778104
    863781 8r08:68 (6.1) BS01 rna ? GO:0000398 ... O95777 38778104
    863782 8r08:9 (6.1) BS01 rna ? GO:0000375 ... Q12874 38778104
    863783 8r08:A (6.1) BS01 peptide ? GO:0000244 ... Q6P2Q9 38778104
    863784 8r08:A (6.1) BS02 rna ? GO:0000244 ... Q6P2Q9 38778104
    863785 8r08:B1 (6.1) BS01 rna ? GO:0000245 ... O75533 38778104
    863786 8r08:B1 (6.1) BS02 rna ? GO:0000245 ... O75533 38778104
    863787 8r08:B2 (6.1) BS01 rna ? GO:0000398 ... Q13435 38778104
    863788 8r08:B6 (6.1) BS01 rna ? GO:0000398 ... Q9Y3B4 38778104
    863789 8r08:BP (6.1) BS01 rna ? GO:0000398 ... Q7RTV0 38778104
    863790 8r08:G (6.1) BS01 rna 3.6.4.13 GO:0000354 ... Q9BUQ8 38778104
    863791 8r08:G (6.1) BS02 rna 3.6.4.13 GO:0000354 ... Q9BUQ8 38778104
    863792 8r08:J (6.1) BS01 rna ? GO:0000244 ... O43395 38778104
    863793 8r08:L (6.1) BS01 rna ? GO:0000244 ... Q8WWY3 38778104
    863794 8r08:L (6.1) BS02 rna ? GO:0000244 ... Q8WWY3 38778104
    863795 8r08:M (6.1) BS01 rna ? GO:0000398 ... P55769 38778104
    863796 8r08:M (6.1) BS02 rna ? GO:0000398 ... P55769 38778104
    863797 8r08:R (6.1) BS01 rna ? GO:0000398 ... Q9BTD8 38778104
    863798 8r08:R (6.1) BS02 rna ? GO:0000398 ... Q9BTD8 38778104
    863799 8r08:S (6.1) BS01 peptide ? GO:0000387 ... O43290 38778104
    863800 8r08:S (6.1) BS02 rna ? GO:0000387 ... O43290 38778104

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).