SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    864201 8r3m:D (3.49) BS02 ZN N/A GO:0000287 ... A0QS66 39384756
    864202 8r3m:D (3.49) BS03 MG N/A GO:0000287 ... A0QS66 39384756
    864203 8r3m:F (3.49) BS01 dna N/A GO:0003677 ... A0QW02 39384756
    864204 8r3m:F (3.49) BS02 dna N/A GO:0003677 ... A0QW02 39384756
    864205 8r3o:A (2.1) BS01 TPP 2.2.1.1 GO:0004802 ... P43757 38767928
    864206 8r3o:A (2.1) BS02 MG 2.2.1.1 GO:0004802 ... P43757 38767928
    864207 8r3o:A (2.1) BS03 TPP 2.2.1.1 GO:0004802 ... P43757 38767928
    864208 8r3o:B (2.1) BS01 TPP 2.2.1.1 GO:0004802 ... P43757 38767928
    864209 8r3o:B (2.1) BS02 TPP 2.2.1.1 GO:0004802 ... P43757 38767928
    864210 8r3o:B (2.1) BS03 MG 2.2.1.1 GO:0004802 ... P43757 38767928
    864211 8r3o:C (2.1) BS01 TPP 2.2.1.1 GO:0004802 ... P43757 38767928
    864212 8r3o:C (2.1) BS02 MG 2.2.1.1 GO:0004802 ... P43757 38767928
    864213 8r3o:C (2.1) BS03 TPP 2.2.1.1 GO:0004802 ... P43757 38767928
    864214 8r3o:D (2.1) BS01 TPP 2.2.1.1 GO:0004802 ... P43757 38767928
    864215 8r3o:D (2.1) BS02 TPP 2.2.1.1 GO:0004802 ... P43757 38767928
    864216 8r3o:D (2.1) BS03 MG 2.2.1.1 GO:0004802 ... P43757 38767928
    864217 8r3p:A (2.9) BS01 TPP 2.2.1.1 GO:0004802 ... A0A133CKH8 38767928
    864218 8r3p:A (2.9) BS02 MG 2.2.1.1 GO:0004802 ... A0A133CKH8 38767928
    864219 8r3p:A (2.9) BS03 TPP 2.2.1.1 GO:0004802 ... A0A133CKH8 38767928
    864220 8r3p:B (2.9) BS01 TPP 2.2.1.1 GO:0004802 ... A0A133CKH8 38767928
    864221 8r3p:B (2.9) BS02 TPP 2.2.1.1 GO:0004802 ... A0A133CKH8 38767928
    864222 8r3p:B (2.9) BS03 MG 2.2.1.1 GO:0004802 ... A0A133CKH8 38767928
    864223 8r3p:C (2.9) BS01 TPP 2.2.1.1 GO:0004802 ... A0A133CKH8 38767928
    864224 8r3p:C (2.9) BS02 MG 2.2.1.1 GO:0004802 ... A0A133CKH8 38767928
    864225 8r3p:C (2.9) BS03 TPP 2.2.1.1 GO:0004802 ... A0A133CKH8 38767928
    864226 8r3p:D (2.9) BS01 TPP 2.2.1.1 GO:0004802 ... A0A133CKH8 38767928
    864227 8r3p:D (2.9) BS02 TPP 2.2.1.1 GO:0004802 ... A0A133CKH8 38767928
    864228 8r3p:D (2.9) BS03 MG 2.2.1.1 GO:0004802 ... A0A133CKH8 38767928
    864229 8r3q:A (1.88) BS01 TPP 2.2.1.1 GO:0004802 ... C6KSV3 38767928
    864230 8r3q:A (1.88) BS02 TPP 2.2.1.1 GO:0004802 ... C6KSV3 38767928
    864231 8r3q:A (1.88) BS03 MG 2.2.1.1 GO:0004802 ... C6KSV3 38767928
    864232 8r3q:B (1.88) BS01 TPP 2.2.1.1 GO:0004802 ... C6KSV3 38767928
    864233 8r3q:B (1.88) BS02 MG 2.2.1.1 GO:0004802 ... C6KSV3 38767928
    864234 8r3q:B (1.88) BS03 TPP 2.2.1.1 GO:0004802 ... C6KSV3 38767928
    864235 8r3q:C (1.88) BS01 TPP 2.2.1.1 GO:0004802 ... C6KSV3 38767928
    864236 8r3q:C (1.88) BS02 MG 2.2.1.1 GO:0004802 ... C6KSV3 38767928
    864237 8r3q:C (1.88) BS03 TPP 2.2.1.1 GO:0004802 ... C6KSV3 38767928
    864238 8r3q:D (1.88) BS01 TPP 2.2.1.1 GO:0004802 ... C6KSV3 38767928
    864239 8r3q:D (1.88) BS02 TPP 2.2.1.1 GO:0004802 ... C6KSV3 38767928
    864240 8r3q:D (1.88) BS03 MG 2.2.1.1 GO:0004802 ... C6KSV3 38767928
    864241 8r3r:A (2.35) BS01 TPP 2.2.1.1 GO:0004802 ... P22976 38767928
    864242 8r3r:A (2.35) BS02 MG 2.2.1.1 GO:0004802 ... P22976 38767928
    864243 8r3r:A (2.35) BS03 TPP 2.2.1.1 GO:0004802 ... P22976 38767928
    864244 8r3r:B (2.35) BS01 TPP 2.2.1.1 GO:0004802 ... P22976 38767928
    864245 8r3r:B (2.35) BS02 TPP 2.2.1.1 GO:0004802 ... P22976 38767928
    864246 8r3r:B (2.35) BS03 MG 2.2.1.1 GO:0004802 ... P22976 38767928
    864247 8r3r:C (2.35) BS01 TPP 2.2.1.1 GO:0004802 ... P22976 38767928
    864248 8r3r:C (2.35) BS02 MG 2.2.1.1 GO:0004802 ... P22976 38767928
    864249 8r3r:C (2.35) BS03 TPP 2.2.1.1 GO:0004802 ... P22976 38767928
    864250 8r3r:D (2.35) BS01 TPP 2.2.1.1 GO:0004802 ... P22976 38767928
    864251 8r3r:D (2.35) BS02 TPP 2.2.1.1 GO:0004802 ... P22976 38767928
    864252 8r3r:D (2.35) BS03 MG 2.2.1.1 GO:0004802 ... P22976 38767928
    864253 8r3s:A (2.8) BS01 TPP 2.2.1.1 GO:0004802 ... P99161 38767928
    864254 8r3s:A (2.8) BS02 MG 2.2.1.1 GO:0004802 ... P99161 38767928
    864255 8r3s:A (2.8) BS03 TPP 2.2.1.1 GO:0004802 ... P99161 38767928
    864256 8r3s:B (2.8) BS01 TPP 2.2.1.1 GO:0004802 ... P99161 38767928
    864257 8r3s:B (2.8) BS02 TPP 2.2.1.1 GO:0004802 ... P99161 38767928
    864258 8r3s:B (2.8) BS03 MG 2.2.1.1 GO:0004802 ... P99161 38767928
    864259 8r3s:C (2.8) BS01 TPP 2.2.1.1 GO:0004802 ... P99161 38767928
    864260 8r3s:C (2.8) BS02 MG 2.2.1.1 GO:0004802 ... P99161 38767928
    864261 8r3s:C (2.8) BS03 TPP 2.2.1.1 GO:0004802 ... P99161 38767928
    864262 8r3s:D (2.8) BS01 TPP 2.2.1.1 GO:0004802 ... P99161 38767928
    864263 8r3s:D (2.8) BS02 TPP 2.2.1.1 GO:0004802 ... P99161 38767928
    864264 8r3s:D (2.8) BS03 MG 2.2.1.1 GO:0004802 ... P99161 38767928
    864265 8r3s:E (2.8) BS01 TPP 2.2.1.1 GO:0004802 ... P99161 38767928
    864266 8r3s:E (2.8) BS02 MG 2.2.1.1 GO:0004802 ... P99161 38767928
    864267 8r3s:E (2.8) BS03 TPP 2.2.1.1 GO:0004802 ... P99161 38767928
    864268 8r3s:F (2.8) BS01 TPP 2.2.1.1 GO:0004802 ... P99161 38767928
    864269 8r3s:F (2.8) BS02 TPP 2.2.1.1 GO:0004802 ... P99161 38767928
    864270 8r3s:F (2.8) BS03 MG 2.2.1.1 GO:0004802 ... P99161 38767928
    864271 8r3s:G (2.8) BS01 TPP 2.2.1.1 GO:0004802 ... P99161 38767928
    864272 8r3s:G (2.8) BS02 MG 2.2.1.1 GO:0004802 ... P99161 38767928
    864273 8r3s:G (2.8) BS03 TPP 2.2.1.1 GO:0004802 ... P99161 38767928
    864274 8r3s:H (2.8) BS01 TPP 2.2.1.1 GO:0004802 ... P99161 38767928
    864275 8r3s:H (2.8) BS02 TPP 2.2.1.1 GO:0004802 ... P99161 38767928
    864276 8r3s:H (2.8) BS03 MG 2.2.1.1 GO:0004802 ... P99161 38767928
    864277 8r3s:I (2.8) BS01 TPP 2.2.1.1 GO:0004802 ... P99161 38767928
    864278 8r3s:I (2.8) BS02 MG 2.2.1.1 GO:0004802 ... P99161 38767928
    864279 8r3s:I (2.8) BS03 TPP 2.2.1.1 GO:0004802 ... P99161 38767928
    864280 8r3s:J (2.8) BS01 TPP 2.2.1.1 GO:0004802 ... P99161 38767928
    864281 8r3s:J (2.8) BS02 TPP 2.2.1.1 GO:0004802 ... P99161 38767928
    864282 8r3s:J (2.8) BS03 MG 2.2.1.1 GO:0004802 ... P99161 38767928
    864283 8r3u:AAA (1.63) BS01 XTQ N/A GO:0005515 ... P49366 N/A
    864284 8r3u:AAA (1.63) BS02 XTQ N/A GO:0005515 ... P49366 N/A
    864285 8r3u:BBB (1.63) BS01 XTQ N/A GO:0005515 ... P49366 N/A
    864286 8r3u:BBB (1.63) BS02 XTQ N/A GO:0005515 ... P49366 N/A
    864287 8r3u:CCC (1.63) BS01 XTQ N/A GO:0005515 ... P49366 N/A
    864288 8r3u:CCC (1.63) BS02 XTQ N/A GO:0005515 ... P49366 N/A
    864289 8r3u:DDD (1.63) BS01 XTQ N/A GO:0005515 ... P49366 N/A
    864290 8r3u:DDD (1.63) BS02 XTQ N/A GO:0005515 ... P49366 N/A
    864291 8r3v:12 (3.28) BS01 rna ? GO:0000027 ... P0A7M2 38409277
    864292 8r3v:32 (3.28) BS01 rna ? GO:0000027 ... P0AG51 38409277
    864293 8r3v:32 (3.28) BS02 rna ? GO:0000027 ... P0AG51 38409277
    864294 8r3v:4 (3.28) BS01 rna ? GO:0002181 ... P0A7M9 38409277
    864295 8r3v:4 (3.28) BS02 rna ? GO:0002181 ... P0A7M9 38409277
    864296 8r3v:4 (3.28) BS03 ZN ? GO:0002181 ... P0A7M9 38409277
    864297 8r3v:62 (3.28) BS01 rna ? GO:0002181 ... P0A7Q1 38409277
    864298 8r3v:B (3.28) BS01 rna ? GO:0000028 ... P0A7V0 38409277
    864299 8r3v:B (3.28) BS02 peptide ? GO:0000028 ... P0A7V0 38409277
    864300 8r3v:B2 (3.28) BS01 rna ? GO:0000028 ... P0A7V0 38409277
    864301 8r3v:C1 (3.28) BS01 rna ? GO:0000028 ... P0A7V3 38409277
    864302 8r3v:C1 (3.28) BS02 rna ? GO:0000028 ... P0A7V3 38409277
    864303 8r3v:C2 (3.28) BS01 rna ? GO:0000028 ... P0A7V3 38409277
    864304 8r3v:C2 (3.28) BS02 rna ? GO:0000028 ... P0A7V3 38409277
    864305 8r3v:D1 (3.28) BS01 rna ? GO:0000028 ... P0A7V8 38409277
    864306 8r3v:D2 (3.28) BS01 rna ? GO:0000028 ... P0A7V8 38409277
    864307 8r3v:E1 (3.28) BS01 rna ? GO:0000028 ... P0A7W1 38409277
    864308 8r3v:E1 (3.28) BS02 rna ? GO:0000028 ... P0A7W1 38409277
    864309 8r3v:E2 (3.28) BS01 rna ? GO:0000028 ... P0A7W1 38409277
    864310 8r3v:E2 (3.28) BS02 rna ? GO:0000028 ... P0A7W1 38409277
    864311 8r3v:F1 (3.28) BS01 rna ? GO:0002181 ... P02358 38409277
    864312 8r3v:F2 (3.28) BS01 rna ? GO:0002181 ... P02358 38409277
    864313 8r3v:G1 (3.28) BS01 rna ? GO:0000028 ... P02359 38409277
    864314 8r3v:G2 (3.28) BS01 rna ? GO:0000028 ... P02359 38409277
    864315 8r3v:G2 (3.28) BS02 rna ? GO:0000028 ... P02359 38409277
    864316 8r3v:G2 (3.28) BS03 rna ? GO:0000028 ... P02359 38409277
    864317 8r3v:H1 (3.28) BS01 rna ? GO:0000028 ... P0A7W7 38409277
    864318 8r3v:H2 (3.28) BS01 rna ? GO:0000028 ... P0A7W7 38409277
    864319 8r3v:I1 (3.28) BS01 rna ? GO:0000049 ... P0A7X3 38409277
    864320 8r3v:I1 (3.28) BS02 rna ? GO:0000049 ... P0A7X3 38409277
    864321 8r3v:I2 (3.28) BS01 rna ? GO:0000049 ... P0A7X3 38409277
    864322 8r3v:I2 (3.28) BS02 rna ? GO:0000049 ... P0A7X3 38409277
    864323 8r3v:J1 (3.28) BS01 rna ? GO:0000049 ... P0A7R5 38409277
    864324 8r3v:J2 (3.28) BS01 rna ? GO:0000049 ... P0A7R5 38409277
    864325 8r3v:K1 (3.28) BS01 rna ? GO:0002181 ... P0A7R9 38409277
    864326 8r3v:K2 (3.28) BS01 rna ? GO:0002181 ... P0A7R9 38409277
    864327 8r3v:L1 (3.28) BS01 rna ? GO:0000049 ... P0A7S3 38409277
    864328 8r3v:L2 (3.28) BS01 rna ? GO:0000049 ... P0A7S3 38409277
    864329 8r3v:M1 (3.28) BS01 rna ? GO:0000049 ... P0A7S9 38409277
    864330 8r3v:M2 (3.28) BS01 rna ? GO:0000049 ... P0A7S9 38409277
    864331 8r3v:M2 (3.28) BS02 rna ? GO:0000049 ... P0A7S9 38409277
    864332 8r3v:N1 (3.28) BS01 rna ? GO:0000028 ... P0AG59 38409277
    864333 8r3v:N2 (3.28) BS01 rna ? GO:0000028 ... P0AG59 38409277
    864334 8r3v:O1 (3.28) BS01 rna ? GO:0000028 ... P0ADZ4 38409277
    864335 8r3v:O2 (3.28) BS01 rna ? GO:0000028 ... P0ADZ4 38409277
    864336 8r3v:O2 (3.28) BS02 rna ? GO:0000028 ... P0ADZ4 38409277
    864337 8r3v:P1 (3.28) BS01 rna ? GO:0000028 ... P0A7T3 38409277
    864338 8r3v:Q1 (3.28) BS01 rna ? GO:0000028 ... P0AG63 38409277
    864339 8r3v:Q2 (3.28) BS01 rna ? GO:0000028 ... P0AG63 38409277
    864340 8r3v:R1 (3.28) BS01 rna ? GO:0002181 ... P0A7T7 38409277
    864341 8r3v:R2 (3.28) BS01 rna ? GO:0002181 ... P0A7T7 38409277
    864342 8r3v:S1 (3.28) BS01 rna ? GO:0000028 ... P0A7U3 38409277
    864343 8r3v:S2 (3.28) BS01 rna ? GO:0000028 ... P0A7U3 38409277
    864344 8r3v:T1 (3.28) BS01 rna ? GO:0000028 ... P0A7U7 38409277
    864345 8r3v:U1 (3.28) BS01 rna ? GO:0000028 ... P68679 38409277
    864346 8r3v:U1 (3.28) BS02 rna ? GO:0000028 ... P68679 38409277
    864347 8r3v:U2 (3.28) BS01 rna ? GO:0000028 ... P68679 38409277
    864348 8r3v:U2 (3.28) BS02 rna ? GO:0000028 ... P68679 38409277
    864349 8r3v:a2 (3.28) BS01 rna ? GO:0000027 ... P0A7L0 38409277
    864350 8r3v:b2 (3.28) BS01 rna ? GO:0000027 ... P60422 38409277
    864351 8r3v:b2 (3.28) BS02 rna ? GO:0000027 ... P60422 38409277
    864352 8r3v:e2 (3.28) BS01 rna ? GO:0000027 ... P62399 38409277
    864353 8r3v:e2 (3.28) BS02 rna ? GO:0000027 ... P62399 38409277
    864354 8r3v:e2 (3.28) BS03 rna ? GO:0000027 ... P62399 38409277
    864355 8r3v:g2 (3.28) BS01 rna ? GO:0000027 ... P0A7N9 38409277
    864356 8r3v:h2 (3.28) BS01 rna ? GO:0000027 ... P0ADY7 38409277
    864357 8r3v:h2 (3.28) BS02 rna ? GO:0000027 ... P0ADY7 38409277
    864358 8r3v:i2 (3.28) BS01 rna ? GO:0002181 ... P0A7R1 38409277
    864359 8r3v:i2 (3.28) BS02 rna ? GO:0002181 ... P0A7R1 38409277
    864360 8r3v:l2 (3.28) BS01 rna ? GO:0002181 ... P0A7P5 38409277
    864361 8r3v:o2 (3.28) BS01 rna ? GO:0002181 ... P02413 38409277
    864362 8r3v:r2 (3.28) BS01 rna ? GO:0002181 ... P0C018 38409277
    864363 8r3v:r2 (3.28) BS02 rna ? GO:0002181 ... P0C018 38409277
    864364 8r3v:z2 (3.28) BS01 rna ? GO:0000027 ... P0A7L8 38409277
    864365 8r3v:z2 (3.28) BS02 rna ? GO:0000027 ... P0A7L8 38409277
    864366 8r3x:A (2.591) BS01 peptide N/A N/A P41743 39762628
    864367 8r3x:B (2.591) BS01 peptide N/A N/A P41743 39762628
    864368 8r3y:I (3.68) BS01 ANP N/A N/A P41743 39762628
    864369 8r3z:A (3.4) BS01 rna N/A GO:0003676 ... N/A 38951509
    864370 8r3z:A (3.4) BS02 MG N/A GO:0003676 ... N/A 38951509
    864371 8r41:A (2.25) BS01 XUF ? GO:0005975 ... P36222 38427954
    864372 8r41:B (2.25) BS01 XUF ? GO:0005975 ... P36222 38427954
    864373 8r42:A (2.32) BS01 XUC ? GO:0005975 ... P36222 38427954
    864374 8r42:B (2.32) BS01 SO4 ? GO:0005975 ... P36222 38427954
    864375 8r42:B (2.32) BS02 XUC ? GO:0005975 ... P36222 38427954
    864376 8r43:A (0.87) BS01 MAV ? GO:0016829 ... A0A7I9C8Z1 N/A
    864377 8r43:A (0.87) BS02 BEM ? GO:0016829 ... A0A7I9C8Z1 N/A
    864378 8r43:A (0.87) BS03 BEM ? GO:0016829 ... A0A7I9C8Z1 N/A
    864379 8r45:A (1.86) BS01 O6E N/A N/A N/A N/A
    864380 8r45:B (1.86) BS01 O6E N/A N/A N/A N/A
    864381 8r49:A (2.8) BS01 GLC N/A GO:0004645 ... P04045 39398113
    864382 8r49:A (2.8) BS02 GLC N/A GO:0004645 ... P04045 39398113
    864383 8r49:B (2.8) BS01 GLC N/A GO:0004645 ... P04045 39398113
    864384 8r49:B (2.8) BS02 GLC N/A GO:0004645 ... P04045 39398113
    864385 8r49:B (2.8) BS03 GLC N/A GO:0004645 ... P04045 39398113
    864386 8r49:C (2.8) BS01 GLC N/A GO:0004645 ... P04045 39398113
    864387 8r49:C (2.8) BS02 GLC N/A GO:0004645 ... P04045 39398113
    864388 8r49:C (2.8) BS03 GLC N/A GO:0004645 ... P04045 39398113
    864389 8r4b:A (3.88) BS01 GSP ? GO:0000166 ... Q8KC98 38666771
    864390 8r4d:A (3.88) BS01 GSP ? GO:0000166 ... Q8KC98 38666771
    864391 8r4g:A (3.1) BS01 GLC N/A GO:0004645 ... P04045 39398113
    864392 8r4g:B (3.1) BS01 GLC N/A GO:0004645 ... P04045 39398113
    864393 8r4g:C (3.1) BS01 GLC N/A GO:0004645 ... P04045 39398113
    864394 8r4l:A (2.0) BS01 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    864395 8r4l:A (2.0) BS02 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    864396 8r4l:A (2.0) BS03 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    864397 8r4l:A (2.0) BS04 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    864398 8r4l:A (2.0) BS05 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    864399 8r4l:A (2.0) BS06 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    864400 8r4l:A (2.0) BS07 CU1 N/A GO:0042802 ... A0A2D2D105 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).