SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    864601 8qbt:z (2.2) BS01 rna ? GO:0002181 ... P0A7T7 38503735
    864602 8qbu:A (1.09) BS01 42J 2.7.11.1 GO:0000785 ... P19784 N/A
    864603 8qbu:A (1.09) BS02 3NG 2.7.11.1 GO:0000785 ... P19784 N/A
    864604 8qby:B (2.3) BS01 SF4 N/A GO:0005506 ... A1B497 39472559
    864605 8qby:D (2.3) BS01 CA N/A GO:0005886 ... A1B495 39472559
    864606 8qby:D (2.3) BS02 SF4 N/A GO:0005886 ... A1B495 39472559
    864607 8qby:E (2.3) BS01 FES N/A GO:0003954 ... A1B494 39472559
    864608 8qby:F (2.3) BS01 FMN N/A GO:0005737 ... A1B491 39472559
    864609 8qby:F (2.3) BS02 SF4 N/A GO:0005737 ... A1B491 39472559
    864610 8qby:G (2.3) BS01 SF4 N/A GO:0008137 ... A1B489 39472559
    864611 8qby:G (2.3) BS02 SF4 N/A GO:0008137 ... A1B489 39472559
    864612 8qby:G (2.3) BS03 FES N/A GO:0008137 ... A1B489 39472559
    864613 8qby:H (2.3) BS01 P5S N/A GO:0003954 ... A1B487 39472559
    864614 8qby:H (2.3) BS02 U10 N/A GO:0003954 ... A1B487 39472559
    864615 8qby:I (2.3) BS01 SF4 N/A GO:0003954 ... A1B486 39472559
    864616 8qby:I (2.3) BS02 SF4 N/A GO:0003954 ... A1B486 39472559
    864617 8qby:I (2.3) BS03 P5S N/A GO:0003954 ... A1B486 39472559
    864618 8qby:L (2.3) BS01 P5S N/A GO:0003954 ... A1B481 39472559
    864619 8qby:M (2.3) BS01 CA N/A GO:0003954 ... A1B480 39472559
    864620 8qby:N (2.3) BS01 CA N/A GO:0005886 ... A1B479 39472559
    864621 8qby:R (2.3) BS01 ZN N/A N/A A1B357 39472559
    864622 8qby:q (2.3) BS01 P5S N/A GO:0006979 ... A1B1H8 39472559
    864623 8qbz:A (1.9) BS01 HEC N/A GO:0016491 ... Q8EG34 39158169
    864624 8qbz:A (1.9) BS02 HEC N/A GO:0016491 ... Q8EG34 39158169
    864625 8qbz:A (1.9) BS03 HEC N/A GO:0016491 ... Q8EG34 39158169
    864626 8qbz:A (1.9) BS04 HEC N/A GO:0016491 ... Q8EG34 39158169
    864627 8qbz:A (1.9) BS05 HEC N/A GO:0016491 ... Q8EG34 39158169
    864628 8qbz:A (1.9) BS06 HEC N/A GO:0016491 ... Q8EG34 39158169
    864629 8qbz:A (1.9) BS07 HEC N/A GO:0016491 ... Q8EG34 39158169
    864630 8qbz:A (1.9) BS08 HEC N/A GO:0016491 ... Q8EG34 39158169
    864631 8qbz:A (1.9) BS09 HEC N/A GO:0016491 ... Q8EG34 39158169
    864632 8qbz:A (1.9) BS10 HEC N/A GO:0016491 ... Q8EG34 39158169
    864633 8qbz:A (1.9) BS11 CA N/A GO:0016491 ... Q8EG34 39158169
    864634 8qbz:A (1.9) BS12 CA N/A GO:0016491 ... Q8EG34 39158169
    864635 8qbz:A (1.9) BS13 CA N/A GO:0016491 ... Q8EG34 39158169
    864636 8qbz:A (1.9) BS14 CA N/A GO:0016491 ... Q8EG34 39158169
    864637 8qc0:A (2.02) BS01 RIB ? GO:0009159 ... K9TVX3 38449528
    864638 8qc0:B (2.02) BS01 RIB ? GO:0009159 ... K9TVX3 38449528
    864639 8qc0:C (2.02) BS01 RIB ? GO:0009159 ... K9TVX3 38449528
    864640 8qc0:D (2.02) BS01 RIB ? GO:0009159 ... K9TVX3 38449528
    864641 8qc1:L (2.5) BS01 P5S N/A GO:0003954 ... A1B481 39472559
    864642 8qc1:M (2.5) BS01 CA N/A GO:0003954 ... A1B480 39472559
    864643 8qc2:A (2.3) BS01 NAD N/A GO:0000166 ... A0AAJ6N6J4 38100472
    864644 8qc2:A (2.3) BS02 R7R N/A GO:0000166 ... A0AAJ6N6J4 38100472
    864645 8qc2:B (2.3) BS01 NAD N/A GO:0000166 ... A0AAJ6N6J4 38100472
    864646 8qc2:B (2.3) BS02 R7R N/A GO:0000166 ... A0AAJ6N6J4 38100472
    864647 8qc2:C (2.3) BS01 NAD N/A GO:0000166 ... A0AAJ6N6J4 38100472
    864648 8qc2:C (2.3) BS02 R7R N/A GO:0000166 ... A0AAJ6N6J4 38100472
    864649 8qc2:D (2.3) BS01 NAD N/A GO:0000166 ... A0AAJ6N6J4 38100472
    864650 8qc2:D (2.3) BS02 R7R N/A GO:0000166 ... A0AAJ6N6J4 38100472
    864651 8qc3:A (2.65) BS01 NAD ? GO:0000166 ... A0ACD6B8Y2 38100472
    864652 8qc3:B (2.65) BS01 NAD ? GO:0000166 ... A0ACD6B8Y2 38100472
    864653 8qc4:A (1.578) BS01 TXR 4.2.99.21
    5.4.4.2
    5.4.99.5
    GO:0000162 ... P9WFX1 38004425
    864654 8qc4:B (1.578) BS01 TXR 4.2.99.21
    5.4.4.2
    5.4.99.5
    GO:0000162 ... P9WFX1 38004425
    864655 8qc5:A (1.95) BS01 NAD ? GO:0000166 ... A0ACD6B8Y2 38100472
    864656 8qc5:B (1.95) BS01 NAD ? GO:0000166 ... A0ACD6B8Y2 38100472
    864657 8qc6:A (2.4) BS01 NAD ? GO:0000166 ... A0ACD6B8Y2 38100472
    864658 8qc6:A (2.4) BS02 R7R ? GO:0000166 ... A0ACD6B8Y2 38100472
    864659 8qc6:B (2.4) BS01 NAD ? GO:0000166 ... A0ACD6B8Y2 38100472
    864660 8qc6:B (2.4) BS02 R7R ? GO:0000166 ... A0ACD6B8Y2 38100472
    864661 8qc7:A (2.03) BS01 CDM N/A GO:0005515 ... P62615 39510075
    864662 8qc7:A (2.03) BS02 ADP N/A GO:0005515 ... P62615 39510075
    864663 8qc7:B (2.03) BS01 CDM N/A GO:0005515 ... P62615 39510075
    864664 8qc7:B (2.03) BS02 ADP N/A GO:0005515 ... P62615 39510075
    864665 8qc8:A (2.35) BS01 NAD N/A GO:0000166 ... A0AAJ6N6J4 38100472
    864666 8qc8:B (2.35) BS01 NAD N/A GO:0000166 ... A0AAJ6N6J4 38100472
    864667 8qc8:C (2.35) BS01 NAD N/A GO:0000166 ... A0AAJ6N6J4 38100472
    864668 8qc8:D (2.35) BS01 NAD N/A GO:0000166 ... A0AAJ6N6J4 38100472
    864669 8qc9:A (2.0) BS01 HEC N/A GO:0016491 ... Q8EG34 39158169
    864670 8qc9:A (2.0) BS02 HEC N/A GO:0016491 ... Q8EG34 39158169
    864671 8qc9:A (2.0) BS03 HEC N/A GO:0016491 ... Q8EG34 39158169
    864672 8qc9:A (2.0) BS04 HEC N/A GO:0016491 ... Q8EG34 39158169
    864673 8qc9:A (2.0) BS05 HEC N/A GO:0016491 ... Q8EG34 39158169
    864674 8qc9:A (2.0) BS06 HEC N/A GO:0016491 ... Q8EG34 39158169
    864675 8qc9:A (2.0) BS07 HEC N/A GO:0016491 ... Q8EG34 39158169
    864676 8qc9:A (2.0) BS08 HEC N/A GO:0016491 ... Q8EG34 39158169
    864677 8qc9:A (2.0) BS09 HEC N/A GO:0016491 ... Q8EG34 39158169
    864678 8qc9:A (2.0) BS10 HEC N/A GO:0016491 ... Q8EG34 39158169
    864679 8qc9:A (2.0) BS11 CA N/A GO:0016491 ... Q8EG34 39158169
    864680 8qc9:A (2.0) BS12 CA N/A GO:0016491 ... Q8EG34 39158169
    864681 8qc9:A (2.0) BS13 CA N/A GO:0016491 ... Q8EG34 39158169
    864682 8qc9:A (2.0) BS14 CA N/A GO:0016491 ... Q8EG34 39158169
    864683 8qca:A (2.84) BS01 rna 3.6.4.13 GO:0000956 ... P35207 37879335
    864684 8qca:B (2.84) BS01 peptide ? GO:0000956 ... P17883 37879335
    864685 8qcc:A (1.9) BS01 ADP N/A GO:0005515 ... P62615 39510075
    864686 8qcc:A (1.9) BS02 UKO N/A GO:0005515 ... P62615 39510075
    864687 8qcc:A (1.9) BS03 MG N/A GO:0005515 ... P62615 39510075
    864688 8qcc:B (1.9) BS01 ADP N/A GO:0005515 ... P62615 39510075
    864689 8qcc:B (1.9) BS02 UKO N/A GO:0005515 ... P62615 39510075
    864690 8qcc:B (1.9) BS03 MG N/A GO:0005515 ... P62615 39510075
    864691 8qcc:B (1.9) BS04 MG N/A GO:0005515 ... P62615 39510075
    864692 8qcd:A (1.03) BS01 TBS 2.7.11.1 GO:0000785 ... P19784 N/A
    864693 8qce:A (1.05) BS01 GC2 N/A GO:0004553 ... A0AAD0TQY4 40019001
    864694 8qce:B (1.05) BS01 GC2 N/A GO:0004553 ... A0AAD0TQY4 40019001
    864695 8qcf:C (2.55) BS01 rna ? GO:0000176 ... P46948 37879335
    864696 8qcf:I (2.55) BS01 rna ? GO:0000176 ... P38792 37879335
    864697 8qcf:K (2.55) BS01 rna 3.1.13.-
    3.1.26.-
    GO:0000049 ... Q08162 37879335
    864698 8qcf:M (2.55) BS01 rna 3.6.4.13 GO:0003676 ... P35207 37879335
    864699 8qcf:M (2.55) BS02 ATP 3.6.4.13 GO:0003676 ... P35207 37879335
    864700 8qcg:A (1.04) BS01 ANP 2.7.11.1 GO:0000785 ... P19784 N/A
    864701 8qcg:A (1.04) BS02 MG 2.7.11.1 GO:0000785 ... P19784 N/A
    864702 8qcg:B (1.04) BS01 ANP 2.7.11.1 GO:0000785 ... P19784 N/A
    864703 8qcg:B (1.04) BS02 MG 2.7.11.1 GO:0000785 ... P19784 N/A
    864704 8qch:A (2.442) BS01 EIF N/A GO:0004000 ... Q6DHV7 39190717
    864705 8qch:A (2.442) BS02 ZN N/A GO:0004000 ... Q6DHV7 39190717
    864706 8qch:B (2.442) BS01 EIF N/A GO:0004000 ... Q6DHV7 39190717
    864707 8qch:B (2.442) BS02 ZN N/A GO:0004000 ... Q6DHV7 39190717
    864708 8qch:C (2.442) BS01 EIF N/A GO:0004000 ... Q6DHV7 39190717
    864709 8qch:C (2.442) BS02 ZN N/A GO:0004000 ... Q6DHV7 39190717
    864710 8qch:D (2.442) BS01 EIF N/A GO:0004000 ... Q6DHV7 39190717
    864711 8qch:D (2.442) BS02 ZN N/A GO:0004000 ... Q6DHV7 39190717
    864712 8qch:E (2.442) BS01 EIF N/A GO:0004000 ... Q6DHV7 39190717
    864713 8qch:E (2.442) BS02 ZN N/A GO:0004000 ... Q6DHV7 39190717
    864714 8qch:F (2.442) BS01 EIF N/A GO:0004000 ... Q6DHV7 39190717
    864715 8qch:F (2.442) BS02 ZN N/A GO:0004000 ... Q6DHV7 39190717
    864716 8qch:G (2.442) BS01 EIF N/A GO:0004000 ... Q6DHV7 39190717
    864717 8qch:G (2.442) BS02 ZN N/A GO:0004000 ... Q6DHV7 39190717
    864718 8qch:H (2.442) BS01 EIF N/A GO:0004000 ... Q6DHV7 39190717
    864719 8qch:H (2.442) BS02 ZN N/A GO:0004000 ... Q6DHV7 39190717
    864720 8qci:B (2.2) BS01 peptide ? N/A Q9Y6R7 38380729
    864721 8qci:B (2.2) BS02 CA ? N/A Q9Y6R7 38380729
    864722 8qcj:A (2.9) BS01 FAD 1.8.1.15 GO:0004148 ... C0ZY75 38372589
    864723 8qcj:B (2.9) BS01 FAD 1.8.1.15 GO:0004148 ... C0ZY75 38372589
    864724 8qcl:A (1.84) BS01 GCU ? N/A A6KWT9 38179933
    864725 8qcl:B (1.84) BS01 GCU ? N/A A6KWT9 38179933
    864726 8qcm:A (2.39) BS01 V0U N/A GO:0005515 ... Q9UNQ0 39445888
    864727 8qcm:A (2.39) BS02 CLR N/A GO:0005515 ... Q9UNQ0 39445888
    864728 8qcm:A (2.39) BS03 CLR N/A GO:0005515 ... Q9UNQ0 39445888
    864729 8qcm:A (2.39) BS04 V0U N/A GO:0005515 ... Q9UNQ0 39445888
    864730 8qcm:B (2.39) BS01 V0U N/A GO:0005515 ... Q9UNQ0 39445888
    864731 8qcm:B (2.39) BS02 V0U N/A GO:0005515 ... Q9UNQ0 39445888
    864732 8qcm:B (2.39) BS03 CLR N/A GO:0005515 ... Q9UNQ0 39445888
    864733 8qcm:B (2.39) BS04 CLR N/A GO:0005515 ... Q9UNQ0 39445888
    864734 8qcn:A (1.86) BS01 ADP N/A GO:0005515 ... P62615 39510075
    864735 8qcn:A (1.86) BS02 QB9 N/A GO:0005515 ... P62615 39510075
    864736 8qcn:B (1.86) BS01 ADP N/A GO:0005515 ... P62615 39510075
    864737 8qcn:B (1.86) BS02 QB9 N/A GO:0005515 ... P62615 39510075
    864738 8qco:A (1.55) BS01 ADP N/A GO:0005515 ... P62615 39510075
    864739 8qco:A (1.55) BS02 QBI N/A GO:0005515 ... P62615 39510075
    864740 8qco:B (1.55) BS01 ADP N/A GO:0005515 ... P62615 39510075
    864741 8qco:B (1.55) BS02 QBI N/A GO:0005515 ... P62615 39510075
    864742 8qcq:0 (2.3) BS01 rna ? GO:0003735 ... O34687 38503735
    864743 8qcq:0 (2.3) BS02 ZN ? GO:0003735 ... O34687 38503735
    864744 8qcq:1 (2.3) BS01 rna ? GO:0003735 ... P56849 38503735
    864745 8qcq:1 (2.3) BS02 ZN ? GO:0003735 ... P56849 38503735
    864746 8qcq:2 (2.3) BS01 rna ? GO:0003735 ... P05647 38503735
    864747 8qcq:3 (2.3) BS01 rna ? GO:0003735 ... P55874 38503735
    864748 8qcq:4 (2.3) BS01 rna ? GO:0003735 ... P20278 38503735
    864749 8qcq:4 (2.3) BS02 ZN ? GO:0003735 ... P20278 38503735
    864750 8qcq:6 (2.3) BS01 rna ? GO:0003735 ... Q03223 38503735
    864751 8qcq:6 (2.3) BS02 ZN ? GO:0003735 ... Q03223 38503735
    864752 8qcq:C (2.3) BS01 rna ? GO:0002181 ... P42919 38503735
    864753 8qcq:D (2.3) BS01 rna ? GO:0003735 ... P42920 38503735
    864754 8qcq:E (2.3) BS01 rna ? GO:0003735 ... P42921 38503735
    864755 8qcq:F (2.3) BS01 rna ? GO:0000049 ... P12877 38503735
    864756 8qcq:F (2.3) BS02 rna ? GO:0000049 ... P12877 38503735
    864757 8qcq:F (2.3) BS03 rna ? GO:0000049 ... P12877 38503735
    864758 8qcq:G (2.3) BS01 rna ? GO:0002181 ... P46898 38503735
    864759 8qcq:J (2.3) BS01 rna ? GO:0003729 ... P70974 38503735
    864760 8qcq:K (2.3) BS01 rna ? GO:0003735 ... P12875 38503735
    864761 8qcq:K (2.3) BS02 rna ? GO:0003735 ... P12875 38503735
    864762 8qcq:L (2.3) BS01 rna ? GO:0003735 ... P19946 38503735
    864763 8qcq:M (2.3) BS01 rna ? GO:0003735 ... P14577 38503735
    864764 8qcq:M (2.3) BS02 rna ? GO:0003735 ... P14577 38503735
    864765 8qcq:M (2.3) BS03 rna ? GO:0003735 ... P14577 38503735
    864766 8qcq:N (2.3) BS01 rna ? GO:0003735 ... P20277 38503735
    864767 8qcq:O (2.3) BS01 rna ? GO:0003735 ... P46899 38503735
    864768 8qcq:O (2.3) BS02 rna ? GO:0003735 ... P46899 38503735
    864769 8qcq:P (2.3) BS01 rna ? GO:0003735 ... O31742 38503735
    864770 8qcq:P (2.3) BS02 rna ? GO:0003735 ... O31742 38503735
    864771 8qcq:Q (2.3) BS01 rna ? GO:0000027 ... P55873 38503735
    864772 8qcq:R (2.3) BS01 rna ? GO:0003723 ... P26908 38503735
    864773 8qcq:S (2.3) BS01 rna ? GO:0003735 ... P42060 38503735
    864774 8qcq:T (2.3) BS01 rna ? GO:0003735 ... P42924 38503735
    864775 8qcq:U (2.3) BS01 rna ? GO:0003723 ... P0CI78 38503735
    864776 8qcq:W (2.3) BS01 rna ? GO:0003735 ... P05657 38503735
    864777 8qcq:W (2.3) BS02 rna ? GO:0003735 ... P05657 38503735
    864778 8qcq:W (2.3) BS03 rna ? GO:0003735 ... P05657 38503735
    864779 8qcq:X (2.3) BS01 rna ? GO:0003735 ... P37807 38503735
    864780 8qcq:Y (2.3) BS01 rna ? GO:0003735 ... P12873 38503735
    864781 8qcq:Z (2.3) BS01 rna ? GO:0003735 ... P19947 38503735
    864782 8qcq:Z (2.3) BS02 rna ? GO:0003735 ... P19947 38503735
    864783 8qcq:c (2.3) BS01 rna ? GO:0003676 ... P21465 38503735
    864784 8qcq:e (2.3) BS01 rna ? GO:0003723 ... P21467 38503735
    864785 8qcq:f (2.3) BS01 rna ? GO:0003735 ... P21468 38503735
    864786 8qcq:g (2.3) BS01 rna ? GO:0000049 ... P21469 38503735
    864787 8qcq:h (2.3) BS01 rna ? GO:0003735 ... P12879 38503735
    864788 8qcq:i (2.3) BS01 rna ? GO:0003723 ... P21470 38503735
    864789 8qcq:i (2.3) BS02 rna ? GO:0003723 ... P21470 38503735
    864790 8qcq:j (2.3) BS01 rna ? GO:0000049 ... P21471 38503735
    864791 8qcq:k (2.3) BS01 rna ? GO:0003735 ... P04969 38503735
    864792 8qcq:l (2.3) BS01 rna ? GO:0000049 ... P21472 38503735
    864793 8qcq:m (2.3) BS01 rna ? GO:0000049 ... P20282 38503735
    864794 8qcq:m (2.3) BS02 rna ? GO:0000049 ... P20282 38503735
    864795 8qcq:n (2.3) BS01 rna ? GO:0003735 ... P12878 38503735
    864796 8qcq:n (2.3) BS02 ZN ? GO:0003735 ... P12878 38503735
    864797 8qcq:o (2.3) BS01 rna ? GO:0003735 ... P21473 38503735
    864798 8qcq:o (2.3) BS02 rna ? GO:0003735 ... P21473 38503735
    864799 8qcq:q (2.3) BS01 rna ? GO:0003735 ... P12874 38503735
    864800 8qcq:r (2.3) BS01 rna ? GO:0003735 ... P21475 38503735

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).