SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    865201 8qhf:A (2.69) BS01 GLC N/A N/A Q8NTG4 39880088
    865202 8qhf:A (2.69) BS02 VBL N/A N/A Q8NTG4 39880088
    865203 8qhg:A (1.91) BS01 V8I N/A GO:0004064 ... P00918 39411526
    865204 8qhg:A (1.91) BS02 ZN N/A GO:0004064 ... P00918 39411526
    865205 8qhj:A (1.62) BS01 ZN N/A GO:0004064 ... P00918 39411526
    865206 8qhj:A (1.62) BS02 V8I N/A GO:0004064 ... P00918 39411526
    865207 8qhk:A (1.95) BS01 FES 7.1.1.- GO:0003954 ... O66842 38503292
    865208 8qhk:B (1.95) BS01 SF4 7.1.1.- GO:0008137 ... O66841 38503292
    865209 8qhk:B (1.95) BS02 FNR 7.1.1.- GO:0008137 ... O66841 38503292
    865210 8qhk:B (1.95) BS03 AP0 7.1.1.- GO:0008137 ... O66841 38503292
    865211 8qhk:C (1.95) BS01 FES 7.1.1.- GO:0003954 ... O66842 38503292
    865212 8qhk:D (1.95) BS01 SF4 7.1.1.- GO:0008137 ... O66841 38503292
    865213 8qhk:D (1.95) BS02 FNR 7.1.1.- GO:0008137 ... O66841 38503292
    865214 8qhk:D (1.95) BS03 AP0 7.1.1.- GO:0008137 ... O66841 38503292
    865215 8qhl:A (1.9) BS01 peptide 3.4.15.1 GO:0006508 ... P12821 37904282
    865216 8qhl:A (1.9) BS02 ZN 3.4.15.1 GO:0006508 ... P12821 37904282
    865217 8qhl:A (1.9) BS03 MG 3.4.15.1 GO:0006508 ... P12821 37904282
    865218 8qhl:B (1.9) BS01 peptide 3.4.15.1 GO:0006508 ... P12821 37904282
    865219 8qhl:B (1.9) BS02 ZN 3.4.15.1 GO:0006508 ... P12821 37904282
    865220 8qhn:A (1.99) BS01 NAP N/A GO:0008886 ... Q99Z67 41437515
    865221 8qhn:A (1.99) BS02 E4P N/A GO:0008886 ... Q99Z67 41437515
    865222 8qhn:B (1.99) BS01 NAP N/A GO:0008886 ... Q99Z67 41437515
    865223 8qhn:E (1.99) BS01 NAP N/A GO:0008886 ... Q99Z67 41437515
    865224 8qhn:F (1.99) BS01 NAP N/A GO:0008886 ... Q99Z67 41437515
    865225 8qho:AAA (1.43) BS01 ZN N/A GO:0004064 ... P00918 39378331
    865226 8qho:AAA (1.43) BS02 KIX N/A GO:0004064 ... P00918 39378331
    865227 8qhp:A (2.8) BS01 ZN 6.1.1.16 GO:0000166 ... Q8U227 38325366
    865228 8qhp:B (2.8) BS01 ZN 6.1.1.16 GO:0000166 ... Q8U227 38325366
    865229 8qhq:A (1.78) BS01 5HU 3.2.2.- GO:0009159 ... O43598 37884503
    865230 8qhq:A (1.78) BS02 5HU 3.2.2.- GO:0009159 ... O43598 37884503
    865231 8qhq:B (1.78) BS01 5HU 3.2.2.- GO:0009159 ... O43598 37884503
    865232 8qhq:B (1.78) BS02 5HU 3.2.2.- GO:0009159 ... O43598 37884503
    865233 8qhq:C (1.78) BS01 5HU 3.2.2.- GO:0009159 ... O43598 37884503
    865234 8qhq:C (1.78) BS02 5HU 3.2.2.- GO:0009159 ... O43598 37884503
    865235 8qhq:D (1.78) BS01 5HU 3.2.2.- GO:0009159 ... O43598 37884503
    865236 8qhq:D (1.78) BS02 5HU 3.2.2.- GO:0009159 ... O43598 37884503
    865237 8qhq:E (1.78) BS01 5HU 3.2.2.- GO:0009159 ... O43598 37884503
    865238 8qhq:F (1.78) BS01 5HU 3.2.2.- GO:0009159 ... O43598 37884503
    865239 8qhr:A (1.65) BS01 3DR 3.2.2.- GO:0009159 ... O43598 37884503
    865240 8qhr:A (1.65) BS02 3DR 3.2.2.- GO:0009159 ... O43598 37884503
    865241 8qhr:B (1.65) BS01 3DR 3.2.2.- GO:0009159 ... O43598 37884503
    865242 8qhr:B (1.65) BS02 3DR 3.2.2.- GO:0009159 ... O43598 37884503
    865243 8qhu:A (2.72) BS01 rna N/A GO:0002181 ... Q4FWX5 N/A
    865244 8qhu:A (2.72) BS02 rna N/A GO:0002181 ... Q4FWX5 N/A
    865245 8qhu:A (2.72) BS03 rna N/A GO:0002181 ... Q4FWX5 N/A
    865246 8qhu:A (2.72) BS04 rna N/A GO:0002181 ... Q4FWX5 N/A
    865247 8qhu:B (2.72) BS01 rna N/A GO:0003723 ... Q4Q2Q6 N/A
    865248 8qhu:B (2.72) BS02 rna N/A GO:0003723 ... Q4Q2Q6 N/A
    865249 8qhu:B (2.72) BS03 rna N/A GO:0003723 ... Q4Q2Q6 N/A
    865250 8qhu:B (2.72) BS04 rna N/A GO:0003723 ... Q4Q2Q6 N/A
    865251 8qhu:C (2.72) BS01 rna N/A GO:0003723 ... E9ADW5 N/A
    865252 8qhu:C (2.72) BS02 rna N/A GO:0003723 ... E9ADW5 N/A
    865253 8qhu:C (2.72) BS03 rna N/A GO:0003723 ... E9ADW5 N/A
    865254 8qhu:D (2.72) BS01 rna N/A GO:0003723 ... P48157 N/A
    865255 8qhu:D (2.72) BS02 rna N/A GO:0003723 ... P48157 N/A
    865256 8qhu:E (2.72) BS01 rna N/A GO:0002181 ... Q4QC91 N/A
    865257 8qhu:E (2.72) BS02 rna N/A GO:0002181 ... Q4QC91 N/A
    865258 8qhu:E (2.72) BS03 rna N/A GO:0002181 ... Q4QC91 N/A
    865259 8qhu:E (2.72) BS04 rna N/A GO:0002181 ... Q4QC91 N/A
    865260 8qhu:F (2.72) BS01 rna N/A GO:0002181 ... Q4Q4D3 N/A
    865261 8qhu:F (2.72) BS02 rna N/A GO:0002181 ... Q4Q4D3 N/A
    865262 8qhu:G (2.72) BS01 rna N/A GO:0000470 ... Q4QIP1 N/A
    865263 8qhu:G (2.72) BS02 rna N/A GO:0000470 ... Q4QIP1 N/A
    865264 8qhu:G (2.72) BS03 rna N/A GO:0000470 ... Q4QIP1 N/A
    865265 8qhu:H (2.72) BS01 rna N/A GO:0003729 ... Q4QFG2 N/A
    865266 8qhu:H (2.72) BS02 rna N/A GO:0003729 ... Q4QFG2 N/A
    865267 8qhu:H (2.72) BS03 rna N/A GO:0003729 ... Q4QFG2 N/A
    865268 8qhu:H (2.72) BS04 rna N/A GO:0003729 ... Q4QFG2 N/A
    865269 8qhu:I (2.72) BS01 rna N/A GO:0003723 ... E9AEA8 N/A
    865270 8qhu:I (2.72) BS02 rna N/A GO:0003723 ... E9AEA8 N/A
    865271 8qhu:I (2.72) BS03 rna N/A GO:0003723 ... E9AEA8 N/A
    865272 8qhu:J (2.72) BS01 rna N/A GO:0003735 ... E9AFK3 N/A
    865273 8qhu:J (2.72) BS02 rna N/A GO:0003735 ... E9AFK3 N/A
    865274 8qhu:K (2.72) BS01 rna N/A GO:0003723 ... Q4QBJ1 N/A
    865275 8qhu:K (2.72) BS02 rna N/A GO:0003723 ... Q4QBJ1 N/A
    865276 8qhu:K (2.72) BS03 rna N/A GO:0003723 ... Q4QBJ1 N/A
    865277 8qhu:L (2.72) BS01 rna N/A GO:0003735 ... E9AFK0 N/A
    865278 8qhu:L (2.72) BS02 rna N/A GO:0003735 ... E9AFK0 N/A
    865279 8qhu:M (2.72) BS01 rna N/A GO:0002181 ... Q4Q6S3 N/A
    865280 8qhu:M (2.72) BS02 rna N/A GO:0002181 ... Q4Q6S3 N/A
    865281 8qhu:M (2.72) BS03 rna N/A GO:0002181 ... Q4Q6S3 N/A
    865282 8qhu:N (2.72) BS01 rna N/A GO:0003735 ... O97213 N/A
    865283 8qhu:N (2.72) BS02 rna N/A GO:0003735 ... O97213 N/A
    865284 8qhu:N (2.72) BS03 rna N/A GO:0003735 ... O97213 N/A
    865285 8qhu:O (2.72) BS01 rna N/A GO:0000027 ... E9AF10 N/A
    865286 8qhu:O (2.72) BS02 rna N/A GO:0000027 ... E9AF10 N/A
    865287 8qhu:O (2.72) BS03 rna N/A GO:0000027 ... E9AF10 N/A
    865288 8qhu:P (2.72) BS01 rna N/A GO:0002181 ... Q4QG98 N/A
    865289 8qhu:P (2.72) BS02 rna N/A GO:0002181 ... Q4QG98 N/A
    865290 8qhu:Q (2.72) BS01 rna N/A GO:0003723 ... Q4QJ37 N/A
    865291 8qhu:Q (2.72) BS02 rna N/A GO:0003723 ... Q4QJ37 N/A
    865292 8qhu:Q (2.72) BS03 rna N/A GO:0003723 ... Q4QJ37 N/A
    865293 8qhu:Q (2.72) BS04 rna N/A GO:0003723 ... Q4QJ37 N/A
    865294 8qhu:Q (2.72) BS05 rna N/A GO:0003723 ... Q4QJ37 N/A
    865295 8qhu:R (2.72) BS01 rna N/A GO:0002181 ... Q4Q5J4 N/A
    865296 8qhu:R (2.72) BS02 rna N/A GO:0002181 ... Q4Q5J4 N/A
    865297 8qhu:R (2.72) BS03 rna N/A GO:0002181 ... Q4Q5J4 N/A
    865298 8qhu:S (2.72) BS01 rna N/A GO:0003735 ... Q4QEX4 N/A
    865299 8qhu:S (2.72) BS02 rna N/A GO:0003735 ... Q4QEX4 N/A
    865300 8qhu:S (2.72) BS03 rna N/A GO:0003735 ... Q4QEX4 N/A
    865301 8qhu:SA (2.72) BS01 rna N/A GO:0003735 ... Q4FX73 N/A
    865302 8qhu:SA (2.72) BS02 rna N/A GO:0003735 ... Q4FX73 N/A
    865303 8qhu:SB (2.72) BS01 rna N/A GO:0000028 ... Q4Q0Q0 N/A
    865304 8qhu:SC (2.72) BS01 rna N/A GO:0003723 ... Q4Q4A0 N/A
    865305 8qhu:SD (2.72) BS01 rna N/A GO:0003723 ... Q4QIM3 N/A
    865306 8qhu:SE (2.72) BS01 rna N/A GO:0003723 ... Q4QG31 N/A
    865307 8qhu:SF (2.72) BS01 rna N/A GO:0003723 ... Q4QDL5 N/A
    865308 8qhu:SG (2.72) BS01 rna N/A GO:0003735 ... Q9NE83 N/A
    865309 8qhu:SH (2.72) BS01 rna N/A GO:0003729 ... Q868B1 N/A
    865310 8qhu:SH (2.72) BS02 rna N/A GO:0003729 ... Q868B1 N/A
    865311 8qhu:SI (2.72) BS01 rna N/A GO:0003735 ... E9AC32 N/A
    865312 8qhu:SJ (2.72) BS01 rna N/A GO:0003735 ... Q4QGW3 N/A
    865313 8qhu:SK (2.72) BS01 rna N/A GO:0002181 ... P25204 N/A
    865314 8qhu:SK (2.72) BS02 rna N/A GO:0002181 ... P25204 N/A
    865315 8qhu:SK (2.72) BS03 rna N/A GO:0002181 ... P25204 N/A
    865316 8qhu:SL (2.72) BS01 rna N/A GO:0000462 ... Q4Q9A5 N/A
    865317 8qhu:SM (2.72) BS01 rna N/A GO:0003735 ... Q4Q8G4 N/A
    865318 8qhu:SN (2.72) BS01 rna N/A GO:0003723 ... Q4Q1X7 N/A
    865319 8qhu:SO (2.72) BS01 rna N/A GO:0000028 ... Q4Q8H1 N/A
    865320 8qhu:SP (2.72) BS01 rna N/A GO:0003735 ... Q4QC89 N/A
    865321 8qhu:SQ (2.72) BS01 rna N/A GO:0003735 ... Q4QG97 N/A
    865322 8qhu:SR (2.72) BS01 rna N/A GO:0003676 ... Q4Q1Y3 N/A
    865323 8qhu:SS (2.72) BS01 rna N/A GO:0002181 ... Q4Q817 N/A
    865324 8qhu:SS (2.72) BS02 MG N/A GO:0002181 ... Q4Q817 N/A
    865325 8qhu:ST (2.72) BS01 rna N/A GO:0000462 ... Q4Q3M1 N/A
    865326 8qhu:SU (2.72) BS01 rna N/A GO:0003735 ... Q4QCN7 N/A
    865327 8qhu:SU (2.72) BS02 rna N/A GO:0003735 ... Q4QCN7 N/A
    865328 8qhu:SV (2.72) BS01 rna N/A GO:0003735 ... Q4Q806 N/A
    865329 8qhu:SW (2.72) BS01 rna N/A GO:0003723 ... Q4QBV0 N/A
    865330 8qhu:SX (2.72) BS01 rna N/A GO:0003735 ... E9AEE8 N/A
    865331 8qhu:SX (2.72) BS02 MG N/A GO:0003735 ... E9AEE8 N/A
    865332 8qhu:SY (2.72) BS01 rna N/A GO:0000447 ... Q4QH01 N/A
    865333 8qhu:SZ (2.72) BS01 rna N/A GO:0002181 ... Q4Q1D2 N/A
    865334 8qhu:Sa (2.72) BS01 rna N/A GO:0003735 ... Q4Q9X4 N/A
    865335 8qhu:Sb (2.72) BS01 rna N/A GO:0003729 ... Q4Q8L6 N/A
    865336 8qhu:Sb (2.72) BS02 MG N/A GO:0003729 ... Q4Q8L6 N/A
    865337 8qhu:Sc (2.72) BS01 rna N/A GO:0003735 ... Q4Q140 N/A
    865338 8qhu:Sd (2.72) BS01 rna N/A GO:0000028 ... Q4Q931 N/A
    865339 8qhu:Se (2.72) BS01 rna N/A GO:0003735 ... Q4Q7P0 N/A
    865340 8qhu:Sf (2.72) BS01 rna N/A GO:0003729 ... Q4QFK7 N/A
    865341 8qhu:Sg (2.72) BS01 rna N/A GO:0005080 ... Q4Q7Y7 N/A
    865342 8qhu:Sh (2.72) BS01 rna N/A GO:0003676 ... Q4Q5K7 N/A
    865343 8qhu:T (2.72) BS01 rna N/A GO:0002181 ... Q4QAX6 N/A
    865344 8qhu:T (2.72) BS02 rna N/A GO:0002181 ... Q4QAX6 N/A
    865345 8qhu:T (2.72) BS03 rna N/A GO:0002181 ... Q4QAX6 N/A
    865346 8qhu:T (2.72) BS04 rna N/A GO:0002181 ... Q4QAX6 N/A
    865347 8qhu:T (2.72) BS05 rna N/A GO:0002181 ... Q4QAX6 N/A
    865348 8qhu:T (2.72) BS06 MG N/A GO:0002181 ... Q4QAX6 N/A
    865349 8qhu:V (2.72) BS01 rna N/A GO:0003735 ... Q4QJ20 N/A
    865350 8qhu:V (2.72) BS02 rna N/A GO:0003735 ... Q4QJ20 N/A
    865351 8qhu:V (2.72) BS03 rna N/A GO:0003735 ... Q4QJ20 N/A
    865352 8qhu:W (2.72) BS01 rna N/A GO:0002181 ... Q4QAC5 N/A
    865353 8qhu:W (2.72) BS02 rna N/A GO:0002181 ... Q4QAC5 N/A
    865354 8qhu:X (2.72) BS01 rna N/A GO:0002181 ... Q4Q1W6 N/A
    865355 8qhu:X (2.72) BS02 rna N/A GO:0002181 ... Q4Q1W6 N/A
    865356 8qhu:Y (2.72) BS01 rna N/A GO:0003735 ... Q4Q504 N/A
    865357 8qhu:Y (2.72) BS02 rna N/A GO:0003735 ... Q4Q504 N/A
    865358 8qhu:Z (2.72) BS01 rna N/A GO:0003735 ... Q4QGW7 N/A
    865359 8qhu:a (2.72) BS01 rna N/A GO:0000463 ... Q4Q8V7 N/A
    865360 8qhu:a (2.72) BS02 rna N/A GO:0000463 ... Q4Q8V7 N/A
    865361 8qhu:b (2.72) BS01 rna N/A GO:0002181 ... Q4Q178 N/A
    865362 8qhu:b (2.72) BS02 rna N/A GO:0002181 ... Q4Q178 N/A
    865363 8qhu:c (2.72) BS01 rna N/A GO:0000463 ... Q4Q9H4 N/A
    865364 8qhu:c (2.72) BS02 rna N/A GO:0000463 ... Q4Q9H4 N/A
    865365 8qhu:d (2.72) BS01 rna N/A GO:0003723 ... E9AEK1 N/A
    865366 8qhu:e (2.72) BS01 rna N/A GO:0002181 ... E9AFF2 N/A
    865367 8qhu:e (2.72) BS02 rna N/A GO:0002181 ... E9AFF2 N/A
    865368 8qhu:e (2.72) BS03 rna N/A GO:0002181 ... E9AFF2 N/A
    865369 8qhu:e (2.72) BS04 rna N/A GO:0002181 ... E9AFF2 N/A
    865370 8qhu:f (2.72) BS01 rna N/A GO:0003735 ... Q4QC11 N/A
    865371 8qhu:g (2.72) BS01 rna N/A GO:0002181 ... Q4QHL3 N/A
    865372 8qhu:g (2.72) BS02 rna N/A GO:0002181 ... Q4QHL3 N/A
    865373 8qhu:g (2.72) BS03 rna N/A GO:0002181 ... Q4QHL3 N/A
    865374 8qhu:h (2.72) BS01 rna N/A GO:0003735 ... Q4QDP9 N/A
    865375 8qhu:h (2.72) BS02 rna N/A GO:0003735 ... Q4QDP9 N/A
    865376 8qhu:h (2.72) BS03 rna N/A GO:0003735 ... Q4QDP9 N/A
    865377 8qhu:i (2.72) BS01 rna N/A GO:0002181 ... Q4QCE1 N/A
    865378 8qhu:i (2.72) BS02 rna N/A GO:0002181 ... Q4QCE1 N/A
    865379 8qhu:j (2.72) BS01 rna N/A GO:0000448 ... E9AEH2 N/A
    865380 8qhu:j (2.72) BS02 rna N/A GO:0000448 ... E9AEH2 N/A
    865381 8qhu:j (2.72) BS03 rna N/A GO:0000448 ... E9AEH2 N/A
    865382 8qhu:k (2.72) BS01 rna N/A GO:0002181 ... Q4Q8X0 N/A
    865383 8qhu:k (2.72) BS02 rna N/A GO:0002181 ... Q4Q8X0 N/A
    865384 8qhu:k (2.72) BS03 rna N/A GO:0002181 ... Q4Q8X0 N/A
    865385 8qhu:l (2.72) BS01 rna N/A GO:0002181 ... Q4QEQ0 N/A
    865386 8qhu:l (2.72) BS02 rna N/A GO:0002181 ... Q4QEQ0 N/A
    865387 8qhu:l (2.72) BS03 rna N/A GO:0002181 ... Q4QEQ0 N/A
    865388 8qhu:m (2.72) BS01 rna N/A GO:0003729 ... P69201 N/A
    865389 8qhu:m (2.72) BS02 rna N/A GO:0003729 ... P69201 N/A
    865390 8qhu:m (2.72) BS03 rna N/A GO:0003729 ... P69201 N/A
    865391 8qhu:n (2.72) BS01 rna N/A GO:0003735 ... A0A0M9FZM0 N/A
    865392 8qhu:n (2.72) BS02 rna N/A GO:0003735 ... A0A0M9FZM0 N/A
    865393 8qhu:o (2.72) BS01 rna N/A GO:0003735 ... Q4QC01 N/A
    865394 8qhu:o (2.72) BS02 rna N/A GO:0003735 ... Q4QC01 N/A
    865395 8qhu:o (2.72) BS03 rna N/A GO:0003735 ... Q4QC01 N/A
    865396 8qhu:p (2.72) BS01 rna N/A GO:0002181 ... Q4Q3L3 N/A
    865397 8qhu:p (2.72) BS02 rna N/A GO:0002181 ... Q4Q3L3 N/A
    865398 8qhu:p (2.72) BS03 rna N/A GO:0002181 ... Q4Q3L3 N/A
    865399 8qi8:A (1.35) BS01 FMN N/A N/A Q8LPD9 39037420
    865400 8qi9:A (1.87) BS01 FMN N/A N/A Q8LPD9 39037420
    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).