SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    865201 8r6c:x (2.2) BS01 rna N/A GO:0000027 ... P0A7M6 38826346
    865202 8r6c:y (2.2) BS01 rna N/A GO:0000027 ... P0AG51 38826346
    865203 8r6c:y (2.2) BS02 rna N/A GO:0000027 ... P0AG51 38826346
    865204 8r6c:z (2.2) BS01 rna N/A GO:0000027 ... P0A7N4 38826346
    865205 8r6f:B (2.34) BS01 rna ? GO:0003735 ... A0A3B6IU74 38139282
    865206 8r6f:C (2.34) BS01 rna ? GO:0003723 ... A0A3B6KRQ3 38139282
    865207 8r6f:E (2.34) BS01 rna ? GO:0003723 ... A0A1D5SLI4 38139282
    865208 8r6f:G (2.34) BS01 rna ? GO:0003735 ... W5C8N6 38139282
    865209 8r6f:H (2.34) BS01 rna ? GO:0003735 ... Q5I7K2 38139282
    865210 8r6f:I (2.34) BS01 rna ? GO:0000462 ... A0A1D5UKZ4 38139282
    865211 8r6f:J (2.34) BS01 rna ? GO:0003723 ... W5FPA7 38139282
    865212 8r6f:L (2.34) BS01 rna ? GO:0003735 ... W5BFB7 38139282
    865213 8r6f:N (2.34) BS01 rna ? GO:0003735 ... W5I035 38139282
    865214 8r6f:O (2.34) BS01 rna ? GO:0000028 ... A0A3B6SS17 38139282
    865215 8r6f:V (2.34) BS01 rna ? GO:0000447 ... A0A0C4BJ86 38139282
    865216 8r6f:W (2.34) BS01 rna ? GO:0003735 ... E2F3W4 38139282
    865217 8r6f:X (2.34) BS01 rna ? GO:0003735 ... W5FV77 38139282
    865218 8r6f:Y (2.34) BS01 rna ? GO:0003735 ... A0A3B6RHV8 38139282
    865219 8r6f:a (2.34) BS01 rna ? GO:0003729 ... A0A3B6KQB8 38139282
    865220 8r6f:a (2.34) BS02 ZN ? GO:0003729 ... A0A3B6KQB8 38139282
    865221 8r6f:b (2.34) BS01 rna ? GO:0000028 ... A0A341UET3 38139282
    865222 8r6f:e (2.34) BS01 rna ? GO:0003735 ... A0A3B6S9M7 38139282
    865223 8r6f:k (2.34) BS01 peptide ? GO:0000028 ... W5E2W7 38139282
    865224 8r6f:k (2.34) BS02 rna ? GO:0000028 ... W5E2W7 38139282
    865225 8r6j:A (1.82) BS01 Y7F N/A N/A Q6FWV7 39821709
    865226 8r6j:B (1.82) BS01 Y7F N/A N/A Q6FWV7 39821709
    865227 8r6k:A (2.19) BS01 Y78 N/A N/A Q6FWV7 39821709
    865228 8r6k:B (2.19) BS01 Y78 N/A N/A Q6FWV7 39821709
    865229 8r6k:C (2.19) BS01 Y78 N/A N/A Q6FWV7 39821709
    865230 8r6m:A (1.95) BS01 1GH N/A N/A Q6FWV7 39821709
    865231 8r6m:B (1.95) BS01 1GH N/A N/A Q6FWV7 39821709
    865232 8r6m:C (1.95) BS01 1GH N/A N/A Q6FWV7 39821709
    865233 8r6m:D (1.95) BS01 1GH N/A N/A Q6FWV7 39821709
    865234 8r6n:A (2.11) BS01 Y7B N/A N/A Q6FWV7 39821709
    865235 8r6o:A (2.2) BS01 GTP N/A GO:0000226 ... P81947 39509402
    865236 8r6o:A (2.2) BS02 CA N/A GO:0000226 ... P81947 39509402
    865237 8r6o:A (2.2) BS03 RME N/A GO:0000226 ... P81947 39509402
    865238 8r6o:B (2.2) BS01 GDP N/A GO:0000226 ... Q6B856 39509402
    865239 8r6o:B (2.2) BS02 RME N/A GO:0000226 ... Q6B856 39509402
    865240 8r6o:C (2.2) BS01 GTP N/A GO:0000226 ... P81947 39509402
    865241 8r6o:C (2.2) BS02 CA N/A GO:0000226 ... P81947 39509402
    865242 8r6o:D (2.2) BS01 GDP N/A GO:0000226 ... Q6B856 39509402
    865243 8r6o:D (2.2) BS02 RME N/A GO:0000226 ... Q6B856 39509402
    865244 8r6o:F (2.2) BS01 ACP N/A GO:0000226 ... A0A8V0Z8P0 39509402
    865245 8r6o:F (2.2) BS02 MG N/A GO:0000226 ... A0A8V0Z8P0 39509402
    865246 8r6p:D (3.16) BS01 dna N/A GO:0000287 ... A0QS66 39384756
    865247 8r6p:D (3.16) BS02 ZN N/A GO:0000287 ... A0QS66 39384756
    865248 8r6p:D (3.16) BS03 ZN N/A GO:0000287 ... A0QS66 39384756
    865249 8r6p:D (3.16) BS04 MG N/A GO:0000287 ... A0QS66 39384756
    865250 8r6p:F (3.16) BS01 dna N/A GO:0003677 ... A0QW02 39384756
    865251 8r6p:F (3.16) BS02 dna N/A GO:0003677 ... A0QW02 39384756
    865252 8r6q:A (2.17) BS01 WEW ? N/A Q9NZQ7 38229762
    865253 8r6q:B (2.17) BS01 WEW ? N/A Q9NZQ7 38229762
    865254 8r6r:D (3.89) BS01 dna N/A GO:0000287 ... A0QS66 39384756
    865255 8r6r:D (3.89) BS02 dna N/A GO:0000287 ... A0QS66 39384756
    865256 8r6r:D (3.89) BS03 ZN N/A GO:0000287 ... A0QS66 39384756
    865257 8r6r:D (3.89) BS04 ZN N/A GO:0000287 ... A0QS66 39384756
    865258 8r6r:D (3.89) BS05 MG N/A GO:0000287 ... A0QS66 39384756
    865259 8r6r:F (3.89) BS01 dna N/A GO:0003677 ... A0QW02 39384756
    865260 8r6r:F (3.89) BS02 dna N/A GO:0003677 ... A0QW02 39384756
    865261 8r6s:E (2.49) BS01 ZN 2.7.7.6 GO:0000428 ... A0A6C0M829 38428394
    865262 8r6s:I (2.49) BS01 FE N/A GO:0004784 ... N/A 38428394
    865263 8r6s:L (2.49) BS01 SAH N/A N/A N/A 38428394
    865264 8r6s:N (2.49) BS01 FE N/A GO:0004784 ... N/A 38428394
    865265 8r6u:A (2.98) BS01 rna 2.7.7.48 GO:0001172 ... I0DF35 38709882
    865266 8r6u:A (2.98) BS02 rna 2.7.7.48 GO:0001172 ... I0DF35 38709882
    865267 8r6u:A (2.98) BS03 rna 2.7.7.48 GO:0001172 ... I0DF35 38709882
    865268 8r6u:A (2.98) BS04 rna 2.7.7.48 GO:0001172 ... I0DF35 38709882
    865269 8r6u:A (2.98) BS05 MG 2.7.7.48 GO:0001172 ... I0DF35 38709882
    865270 8r6v:A (2.5) BS01 KDH N/A GO:0000166 ... P00489 39433280
    865271 8r6v:A (2.5) BS02 CFF N/A GO:0000166 ... P00489 39433280
    865272 8r6w:A (3.35) BS01 rna 2.7.7.48 GO:0001172 ... I0DF35 38709882
    865273 8r6w:A (3.35) BS02 rna 2.7.7.48 GO:0001172 ... I0DF35 38709882
    865274 8r6w:A (3.35) BS03 rna 2.7.7.48 GO:0001172 ... I0DF35 38709882
    865275 8r6w:A (3.35) BS04 rna 2.7.7.48 GO:0001172 ... I0DF35 38709882
    865276 8r6y:A (3.4) BS01 rna 2.7.7.48 GO:0001172 ... I0DF35 38709882
    865277 8r6y:A (3.4) BS02 rna 2.7.7.48 GO:0001172 ... I0DF35 38709882
    865278 8r6y:A (3.4) BS03 rna 2.7.7.48 GO:0001172 ... I0DF35 38709882
    865279 8r6y:A (3.4) BS04 rna 2.7.7.48 GO:0001172 ... I0DF35 38709882
    865280 8r6y:A (3.4) BS05 2KH 2.7.7.48 GO:0001172 ... I0DF35 38709882
    865281 8r6y:A (3.4) BS06 MG 2.7.7.48 GO:0001172 ... I0DF35 38709882
    865282 8r6z:A (2.03) BS01 ZN N/A N/A Q89ZG7 N/A
    865283 8r6z:B (2.03) BS01 ZN N/A N/A Q89ZG7 N/A
    865284 8r70:A (1.797) BS01 BDP N/A GO:0030313 ... Q89ZG7 N/A
    865285 8r70:A (1.797) BS02 P4K N/A GO:0030313 ... Q89ZG7 N/A
    865286 8r70:A (1.797) BS03 ZN N/A GO:0030313 ... Q89ZG7 N/A
    865287 8r70:B (1.797) BS01 BDP N/A GO:0030313 ... Q89ZG7 N/A
    865288 8r70:B (1.797) BS02 P4K N/A GO:0030313 ... Q89ZG7 N/A
    865289 8r70:B (1.797) BS03 ZN N/A GO:0030313 ... Q89ZG7 N/A
    865290 8r71:A (1.92) BS01 BDP N/A N/A Q89ZG7 N/A
    865291 8r71:A (1.92) BS02 P4K N/A N/A Q89ZG7 N/A
    865292 8r71:A (1.92) BS03 ZN N/A N/A Q89ZG7 N/A
    865293 8r71:B (1.92) BS01 BDP N/A N/A Q89ZG7 N/A
    865294 8r71:B (1.92) BS02 P4K N/A N/A Q89ZG7 N/A
    865295 8r71:B (1.92) BS03 ZN N/A N/A Q89ZG7 N/A
    865296 8r72:A (2.58) BS01 BDP N/A N/A Q89ZG7 N/A
    865297 8r72:A (2.58) BS02 ZN N/A N/A Q89ZG7 N/A
    865298 8r72:B (2.58) BS01 BDP N/A N/A Q89ZG7 N/A
    865299 8r72:B (2.58) BS02 ZN N/A N/A Q89ZG7 N/A
    865300 8r73:A (2.11) BS01 ZN N/A GO:0030313 ... A0A0P0GKX0 N/A
    865301 8r74:A (1.54) BS01 YBC ? GO:0002317 ... P09382 38804039
    865302 8r74:B (1.54) BS01 YBC ? GO:0002317 ... P09382 38804039
    865303 8r75:A (2.7) BS01 ZN N/A N/A Q89ZG7 N/A
    865304 8r75:B (2.7) BS01 ZN N/A N/A Q89ZG7 N/A
    865305 8r7b:A (2.18) BS01 ZN N/A N/A P0DTD1 39663451
    865306 8r7b:A (2.18) BS02 ZN N/A N/A P0DTD1 39663451
    865307 8r7b:A (2.18) BS03 ZN N/A N/A P0DTD1 39663451
    865308 8r7b:A (2.18) BS04 SAH N/A N/A P0DTD1 39663451
    865309 8r7b:A (2.18) BS05 YDT N/A N/A P0DTD1 39663451
    865310 8r7b:B (2.18) BS01 ZN N/A N/A P0DTD1 39663451
    865311 8r7b:B (2.18) BS02 ZN N/A N/A P0DTD1 39663451
    865312 8r7b:B (2.18) BS03 ZN N/A N/A P0DTD1 39663451
    865313 8r7b:B (2.18) BS04 SAH N/A N/A P0DTD1 39663451
    865314 8r7b:B (2.18) BS05 YDT N/A N/A P0DTD1 39663451
    865315 8r7c:A (2.82) BS01 dna N/A GO:0000287 ... P43246 N/A
    865316 8r7c:A (2.82) BS02 dna N/A GO:0000287 ... P43246 N/A
    865317 8r7c:A (2.82) BS03 ADP N/A GO:0000287 ... P43246 N/A
    865318 8r7c:A (2.82) BS04 YKW N/A GO:0000287 ... P43246 N/A
    865319 8r7c:B (2.82) BS01 dna N/A N/A P20585 N/A
    865320 8r7c:B (2.82) BS02 dna N/A N/A P20585 N/A
    865321 8r7c:B (2.82) BS03 YKW N/A N/A P20585 N/A
    865322 8r7c:E (2.82) BS01 dna N/A GO:0000287 ... P43246 N/A
    865323 8r7c:E (2.82) BS02 dna N/A GO:0000287 ... P43246 N/A
    865324 8r7c:E (2.82) BS03 ADP N/A GO:0000287 ... P43246 N/A
    865325 8r7c:F (2.82) BS01 dna N/A N/A P20585 N/A
    865326 8r7c:F (2.82) BS02 dna N/A N/A P20585 N/A
    865327 8r7c:F (2.82) BS03 YKW N/A N/A P20585 N/A
    865328 8r7e:A (2.783) BS01 dna N/A GO:0000287 ... P43246 N/A
    865329 8r7e:A (2.783) BS02 ADP N/A GO:0000287 ... P43246 N/A
    865330 8r7e:B (2.783) BS01 dna N/A N/A P20585 N/A
    865331 8r7e:B (2.783) BS02 dna N/A N/A P20585 N/A
    865332 8r7e:B (2.783) BS03 YKQ N/A N/A P20585 N/A
    865333 8r7e:E (2.783) BS01 dna N/A GO:0000287 ... P43246 N/A
    865334 8r7e:E (2.783) BS02 dna N/A GO:0000287 ... P43246 N/A
    865335 8r7e:E (2.783) BS03 dna N/A GO:0000287 ... P43246 N/A
    865336 8r7e:E (2.783) BS04 ADP N/A GO:0000287 ... P43246 N/A
    865337 8r7e:F (2.783) BS01 dna N/A N/A P20585 N/A
    865338 8r7e:F (2.783) BS02 dna N/A N/A P20585 N/A
    865339 8r7e:F (2.783) BS03 YKQ N/A N/A P20585 N/A
    865340 8r7f:A (1.98) BS01 dna N/A N/A Q9NY43 N/A
    865341 8r7f:A (1.98) BS02 dna N/A N/A Q9NY43 N/A
    865342 8r7f:E (1.98) BS01 dna N/A N/A Q9NY43 N/A
    865343 8r7f:E (1.98) BS02 dna N/A N/A Q9NY43 N/A
    865344 8r7g:A (2.09) BS01 YEE 2.7.11.30 GO:0004672 ... Q04771 32369358
    865345 8r7g:B (2.09) BS01 YEE 2.7.11.30 GO:0004672 ... Q04771 32369358
    865346 8r7g:C (2.09) BS01 YEE 2.7.11.30 GO:0004672 ... Q04771 32369358
    865347 8r7g:D (2.09) BS01 YEE 2.7.11.30 GO:0004672 ... Q04771 32369358
    865348 8r7i:A (1.8) BS01 FUC N/A GO:0005507 ... A0A0S3AND7 39151418
    865349 8r7i:A (1.8) BS02 YKK N/A GO:0005507 ... A0A0S3AND7 39151418
    865350 8r7i:A (1.8) BS03 PLQ N/A GO:0005507 ... A0A0S3AND7 39151418
    865351 8r7i:A (1.8) BS04 YMR N/A GO:0005507 ... A0A0S3AND7 39151418
    865352 8r7i:A (1.8) BS05 CU N/A GO:0005507 ... A0A0S3AND7 39151418
    865353 8r7i:A (1.8) BS06 CU N/A GO:0005507 ... A0A0S3AND7 39151418
    865354 8r7i:A (1.8) BS07 CU N/A GO:0005507 ... A0A0S3AND7 39151418
    865355 8r7i:A (1.8) BS08 CU N/A GO:0005507 ... A0A0S3AND7 39151418
    865356 8r7m:A (1.0) BS01 BO3 3.5.2.6 GO:0008800 ... A0A2S1JJX2 38969718
    865357 8r7m:A (1.0) BS02 YCH 3.5.2.6 GO:0008800 ... A0A2S1JJX2 38969718
    865358 8r7n:B (3.4) BS01 rna N/A N/A N/A 39809272
    865359 8r7n:C (3.4) BS01 rna N/A N/A N/A 39809272
    865360 8r7n:D (3.4) BS01 rna N/A N/A N/A 39809272
    865361 8r7n:E (3.4) BS01 rna N/A N/A N/A 39809272
    865362 8r7n:F (3.4) BS01 rna N/A N/A N/A 39809272
    865363 8r7n:h (3.4) BS01 rna N/A N/A N/A 39809272
    865364 8r7n:i (3.4) BS01 rna N/A N/A N/A 39809272
    865365 8r7n:j (3.4) BS01 rna N/A N/A N/A 39809272
    865366 8r7n:k (3.4) BS01 rna N/A N/A N/A 39809272
    865367 8r7n:l (3.4) BS01 rna N/A N/A N/A 39809272
    865368 8r7n:m (3.4) BS01 rna N/A N/A N/A 39809272
    865369 8r7n:n (3.4) BS01 rna N/A N/A N/A 39809272
    865370 8r7o:A (1.36) BS01 YGC N/A N/A Q7Z6Z7 39048679
    865371 8r7o:C (1.36) BS01 YGC N/A N/A Q7Z6Z7 39048679
    865372 8r7q:C (2.78) BS01 QI9 N/A GO:0005243 ... Q9UKL4 38890333
    865373 8r7q:F (2.78) BS01 QI9 N/A GO:0005243 ... Q9UKL4 38890333
    865374 8r7r:A (2.97) BS01 QDN N/A GO:0005243 ... Q9UKL4 N/A
    865375 8r7r:B (2.97) BS01 QDN N/A GO:0005243 ... Q9UKL4 N/A
    865376 8r7r:C (2.97) BS01 QDN N/A GO:0005243 ... Q9UKL4 N/A
    865377 8r7r:D (2.97) BS01 QDN N/A GO:0005243 ... Q9UKL4 N/A
    865378 8r7r:E (2.97) BS01 QDN N/A GO:0005243 ... Q9UKL4 N/A
    865379 8r7r:F (2.97) BS01 QDN N/A GO:0005243 ... Q9UKL4 N/A
    865380 8r7r:G (2.97) BS01 QDN N/A GO:0005243 ... Q9UKL4 N/A
    865381 8r7r:H (2.97) BS01 QDN N/A GO:0005243 ... Q9UKL4 N/A
    865382 8r7r:I (2.97) BS01 QDN N/A GO:0005243 ... Q9UKL4 N/A
    865383 8r7r:J (2.97) BS01 QDN N/A GO:0005243 ... Q9UKL4 N/A
    865384 8r7r:K (2.97) BS01 QDN N/A GO:0005243 ... Q9UKL4 N/A
    865385 8r7r:L (2.97) BS01 QDN N/A GO:0005243 ... Q9UKL4 N/A
    865386 8r7s:A (1.17) BS01 peptide N/A GO:0003755 ... A0A125YL73 39312281
    865387 8r7s:B (1.17) BS01 peptide N/A GO:0003755 ... A0A125YL73 39312281
    865388 8r7t:A (1.2) BS01 peptide N/A GO:0003755 ... A0A125YL73 39312281
    865389 8r7t:B (1.2) BS01 peptide N/A GO:0003755 ... A0A125YL73 39312281
    865390 8r7u:A (1.2) BS01 peptide N/A GO:0003755 ... A0A125YL73 39312281
    865391 8r7u:B (1.2) BS01 peptide N/A GO:0003755 ... A0A125YL73 39312281
    865392 8r7v:A (3.12) BS01 dna N/A GO:0000287 ... P43246 N/A
    865393 8r7v:A (3.12) BS02 MG N/A GO:0000287 ... P43246 N/A
    865394 8r7v:A (3.12) BS03 ADP N/A GO:0000287 ... P43246 N/A
    865395 8r7v:B (3.12) BS01 dna N/A GO:0003677 ... P20585 N/A
    865396 8r7v:B (3.12) BS02 dna N/A GO:0003677 ... P20585 N/A
    865397 8r7v:B (3.12) BS03 YKQ N/A GO:0003677 ... P20585 N/A
    865398 8r7w:A (1.161) BS01 YLE N/A N/A P01116 N/A
    865399 8r7w:A (1.161) BS02 MG N/A N/A P01116 N/A
    865400 8r7w:B (1.161) BS01 YLE N/A N/A P01116 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).