SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    865401 8r7w:B (1.161) BS02 MG N/A N/A P01116 N/A
    865402 8r7x:A (1.314) BS01 MG N/A N/A P01116 N/A
    865403 8r7x:B (1.314) BS01 YFJ N/A N/A P01116 N/A
    865404 8r7x:B (1.314) BS02 MG N/A N/A P01116 N/A
    865405 8r7y:A (3.7) BS01 dna N/A GO:0000987 ... P39140 38842936
    865406 8r7y:A (3.7) BS02 dna N/A GO:0000987 ... P39140 38842936
    865407 8r7y:B (3.7) BS01 dna N/A GO:0000987 ... P39140 38842936
    865408 8r7y:B (3.7) BS02 dna N/A GO:0000987 ... P39140 38842936
    865409 8r7y:C (3.7) BS01 dna N/A GO:0000987 ... P39140 38842936
    865410 8r7y:C (3.7) BS02 dna N/A GO:0000987 ... P39140 38842936
    865411 8r7y:D (3.7) BS01 dna N/A GO:0000987 ... P39140 38842936
    865412 8r7y:D (3.7) BS02 dna N/A GO:0000987 ... P39140 38842936
    865413 8r7z:A (3.26) BS01 dna N/A N/A Q9NY43 N/A
    865414 8r7z:A (3.26) BS02 dna N/A N/A Q9NY43 N/A
    865415 8r7z:E (3.26) BS01 dna N/A N/A Q9NY43 N/A
    865416 8r7z:E (3.26) BS02 dna N/A N/A Q9NY43 N/A
    865417 8r7z:G (3.26) BS01 dna N/A N/A Q9NY43 N/A
    865418 8r7z:G (3.26) BS02 dna N/A N/A Q9NY43 N/A
    865419 8r7z:K (3.26) BS01 dna N/A N/A Q9NY43 N/A
    865420 8r83:N (3.57) BS01 CA N/A GO:0002376 ... O43866 39477921
    865421 8r83:N (3.57) BS02 CA N/A GO:0002376 ... O43866 39477921
    865422 8r84:N (3.6) BS01 CA N/A GO:0002376 ... O43866 39477921
    865423 8r84:N (3.6) BS02 CA N/A GO:0002376 ... O43866 39477921
    865424 8r8a:A (1.317) BS01 GAL ? N/A A0A1S4E5V9 38410776
    865425 8r8b:AAA (1.808) BS01 peptide N/A N/A P41811 39661666
    865426 8r8b:BBB (1.808) BS01 peptide N/A N/A P41811 39661666
    865427 8r8b:BBB (1.808) BS02 peptide N/A N/A P41811 39661666
    865428 8r8b:CCC (1.808) BS01 peptide N/A N/A P41811 39661666
    865429 8r8b:CCC (1.808) BS02 peptide N/A N/A P41811 39661666
    865430 8r8b:DDD (1.808) BS01 peptide N/A N/A P41811 39661666
    865431 8r8b:DDD (1.808) BS02 peptide N/A N/A P41811 39661666
    865432 8r8b:EEE (1.808) BS01 peptide N/A N/A P41811 39661666
    865433 8r8b:EEE (1.808) BS02 peptide N/A N/A P41811 39661666
    865434 8r8b:FFF (1.808) BS01 peptide N/A N/A P41811 39661666
    865435 8r8b:GGG (1.808) BS01 peptide N/A N/A P41811 39661666
    865436 8r8b:GGG (1.808) BS02 peptide N/A N/A P41811 39661666
    865437 8r8b:HHH (1.808) BS01 peptide N/A N/A P41811 39661666
    865438 8r8b:III (1.808) BS01 peptide N/A N/A P41811 39661666
    865439 8r8b:III (1.808) BS02 peptide N/A N/A P41811 39661666
    865440 8r8b:JJJ (1.808) BS01 peptide N/A N/A P41811 39661666
    865441 8r8b:JJJ (1.808) BS02 peptide N/A N/A P41811 39661666
    865442 8r8b:KKK (1.808) BS01 peptide N/A N/A P41811 39661666
    865443 8r8b:KKK (1.808) BS02 peptide N/A N/A P41811 39661666
    865444 8r8b:LLL (1.808) BS01 peptide N/A N/A P41811 39661666
    865445 8r8b:LLL (1.808) BS02 peptide N/A N/A P41811 39661666
    865446 8r8b:MMM (1.808) BS01 peptide N/A N/A P41811 39661666
    865447 8r8b:MMM (1.808) BS02 peptide N/A N/A P41811 39661666
    865448 8r8b:NNN (1.808) BS01 peptide N/A N/A P41811 39661666
    865449 8r8b:OOO (1.808) BS01 peptide N/A N/A P41811 39661666
    865450 8r8b:OOO (1.808) BS02 peptide N/A N/A P41811 39661666
    865451 8r8b:PPP (1.808) BS01 peptide N/A N/A P41811 39661666
    865452 8r8b:PPP (1.808) BS02 peptide N/A N/A P41811 39661666
    865453 8r8b:QQQ (1.808) BS01 peptide N/A N/A P41811 39661666
    865454 8r8b:QQQ (1.808) BS02 peptide N/A N/A P41811 39661666
    865455 8r8b:RRR (1.808) BS01 peptide N/A N/A P41811 39661666
    865456 8r8b:RRR (1.808) BS02 peptide N/A N/A P41811 39661666
    865457 8r8b:SSS (1.808) BS01 peptide N/A N/A P41811 39661666
    865458 8r8b:SSS (1.808) BS02 peptide N/A N/A P41811 39661666
    865459 8r8b:TTT (1.808) BS01 peptide N/A N/A P41811 39661666
    865460 8r8b:TTT (1.808) BS02 peptide N/A N/A P41811 39661666
    865461 8r8b:UUU (1.808) BS01 peptide N/A N/A P41811 39661666
    865462 8r8b:UUU (1.808) BS02 peptide N/A N/A P41811 39661666
    865463 8r8b:VVV (1.808) BS01 peptide N/A N/A P41811 39661666
    865464 8r8b:VVV (1.808) BS02 peptide N/A N/A P41811 39661666
    865465 8r8b:WWW (1.808) BS01 peptide N/A N/A P41811 39661666
    865466 8r8b:WWW (1.808) BS02 peptide N/A N/A P41811 39661666
    865467 8r8b:XXX (1.808) BS01 peptide N/A N/A P41811 39661666
    865468 8r8b:XXX (1.808) BS02 peptide N/A N/A P41811 39661666
    865469 8r8d:A (2.6) BS01 FUC 3.4.21.38 GO:0004252 ... P00748 39059382
    865470 8r8d:B (2.6) BS01 FUC 3.4.21.38 GO:0004252 ... P00748 39059382
    865471 8r8e:A (2.22) BS01 YOX N/A GO:0004672 ... Q13627 39291905
    865472 8r8e:B (2.22) BS01 YOX N/A GO:0004672 ... Q13627 39291905
    865473 8r8e:C (2.22) BS01 YOX N/A GO:0004672 ... Q13627 39291905
    865474 8r8e:D (2.22) BS01 YOX N/A GO:0004672 ... Q13627 39291905
    865475 8r8f:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 38355794
    865476 8r8g:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 38355794
    865477 8r8h:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 38355794
    865478 8r8i:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 38355794
    865479 8r8j:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 38355794
    865480 8r8m:0 (2.4) BS01 rna N/A GO:0000027 ... P0A7N9 38826346
    865481 8r8m:1 (2.4) BS01 rna N/A GO:0002181 ... P0A7P5 38826346
    865482 8r8m:2 (2.4) BS01 rna N/A GO:0002181 ... P0A7Q1 38826346
    865483 8r8m:3 (2.4) BS01 rna N/A GO:0002181 ... P0A7Q6 38826346
    865484 8r8m:3 (2.4) BS02 ZN N/A GO:0002181 ... P0A7Q6 38826346
    865485 8r8m:4 (2.4) BS01 rna N/A GO:0002181 ... P0A7M9 38826346
    865486 8r8m:4 (2.4) BS02 ZN N/A GO:0002181 ... P0A7M9 38826346
    865487 8r8m:B (2.4) BS01 rna N/A GO:0000028 ... P0A7V0 38826346
    865488 8r8m:C (2.4) BS01 rna N/A GO:0000028 ... P0A7V3 38826346
    865489 8r8m:D (2.4) BS01 rna N/A GO:0000028 ... P0A7V8 38826346
    865490 8r8m:E (2.4) BS01 rna N/A GO:0000028 ... P0A7W1 38826346
    865491 8r8m:F (2.4) BS01 rna N/A GO:0002181 ... P02358 38826346
    865492 8r8m:G (2.4) BS01 rna N/A GO:0000028 ... P02359 38826346
    865493 8r8m:H (2.4) BS01 rna N/A GO:0000028 ... P0A7W7 38826346
    865494 8r8m:I (2.4) BS01 rna N/A GO:0000049 ... P0A7X3 38826346
    865495 8r8m:I (2.4) BS02 rna N/A GO:0000049 ... P0A7X3 38826346
    865496 8r8m:J (2.4) BS01 rna N/A GO:0000049 ... P0A7R5 38826346
    865497 8r8m:K (2.4) BS01 rna N/A GO:0002181 ... P0A7R9 38826346
    865498 8r8m:L (2.4) BS01 rna N/A GO:0000049 ... P0A7S3 38826346
    865499 8r8m:M (2.4) BS01 rna N/A GO:0000049 ... P0A7S9 38826346
    865500 8r8m:N (2.4) BS01 rna N/A GO:0000028 ... P0AG59 38826346
    865501 8r8m:O (2.4) BS01 rna N/A GO:0000028 ... P0ADZ4 38826346
    865502 8r8m:O (2.4) BS02 rna N/A GO:0000028 ... P0ADZ4 38826346
    865503 8r8m:P (2.4) BS01 rna N/A GO:0000028 ... P0A7T3 38826346
    865504 8r8m:Q (2.4) BS01 rna N/A GO:0000028 ... P0AG63 38826346
    865505 8r8m:R (2.4) BS01 rna N/A GO:0002181 ... P0A7T7 38826346
    865506 8r8m:S (2.4) BS01 rna N/A GO:0000028 ... P0A7U3 38826346
    865507 8r8m:T (2.4) BS01 rna N/A GO:0000028 ... P0A7U7 38826346
    865508 8r8m:U (2.4) BS01 rna N/A GO:0000028 ... P68679 38826346
    865509 8r8m:c (2.4) BS01 rna N/A GO:0000027 ... P60422 38826346
    865510 8r8m:c (2.4) BS02 rna N/A GO:0000027 ... P60422 38826346
    865511 8r8m:d (2.4) BS01 rna N/A GO:0000027 ... P60438 38826346
    865512 8r8m:e (2.4) BS01 rna N/A GO:0001070 ... P60723 38826346
    865513 8r8m:f (2.4) BS01 rna N/A GO:0000027 ... P62399 38826346
    865514 8r8m:f (2.4) BS02 rna N/A GO:0000027 ... P62399 38826346
    865515 8r8m:g (2.4) BS01 rna N/A GO:0000027 ... P0AG55 38826346
    865516 8r8m:h (2.4) BS01 rna N/A GO:0002181 ... P0A7R1 38826346
    865517 8r8m:i (2.4) BS01 rna N/A GO:0002181 ... P0AA10 38826346
    865518 8r8m:j (2.4) BS01 rna N/A GO:0002181 ... P0ADY3 38826346
    865519 8r8m:j (2.4) BS02 rna N/A GO:0002181 ... P0ADY3 38826346
    865520 8r8m:k (2.4) BS01 rna N/A GO:0002181 ... P02413 38826346
    865521 8r8m:l (2.4) BS01 rna N/A GO:0000027 ... P0ADY7 38826346
    865522 8r8m:l (2.4) BS02 rna N/A GO:0000027 ... P0ADY7 38826346
    865523 8r8m:m (2.4) BS01 rna N/A GO:0000027 ... P0AG44 38826346
    865524 8r8m:n (2.4) BS01 rna N/A GO:0002181 ... P0C018 38826346
    865525 8r8m:n (2.4) BS02 rna N/A GO:0002181 ... P0C018 38826346
    865526 8r8m:o (2.4) BS01 rna N/A GO:0000027 ... P0A7K6 38826346
    865527 8r8m:o (2.4) BS02 rna N/A GO:0000027 ... P0A7K6 38826346
    865528 8r8m:p (2.4) BS01 rna N/A GO:0000027 ... P0A7L3 38826346
    865529 8r8m:q (2.4) BS01 rna N/A GO:0002181 ... P0AG48 38826346
    865530 8r8m:r (2.4) BS01 rna N/A GO:0002181 ... P61175 38826346
    865531 8r8m:s (2.4) BS01 rna N/A GO:0000027 ... P0ADZ0 38826346
    865532 8r8m:t (2.4) BS01 rna N/A GO:0000027 ... P60624 38826346
    865533 8r8m:u (2.4) BS01 rna N/A GO:0000027 ... P68919 38826346
    865534 8r8m:v (2.4) BS01 rna N/A GO:0000027 ... P0A7L8 38826346
    865535 8r8m:v (2.4) BS02 rna N/A GO:0000027 ... P0A7L8 38826346
    865536 8r8m:w (2.4) BS01 rna N/A GO:0000027 ... P0A7M2 38826346
    865537 8r8m:x (2.4) BS01 rna N/A GO:0000027 ... P0A7M6 38826346
    865538 8r8m:y (2.4) BS01 rna N/A GO:0000027 ... P0AG51 38826346
    865539 8r8m:y (2.4) BS02 rna N/A GO:0000027 ... P0AG51 38826346
    865540 8r8m:z (2.4) BS01 rna N/A GO:0000027 ... P0A7N4 38826346
    865541 8r8r:A (2.79) BS01 peptide ? GO:0003676 ... Q10570 38538052
    865542 8r8r:B (2.79) BS01 rna ? GO:0031124 ... Q9C0J8 38538052
    865543 8r8r:C (2.79) BS01 rna ? GO:0003676 ... O95639 38538052
    865544 8r8r:C (2.79) BS02 ZN ? GO:0003676 ... O95639 38538052
    865545 8r8r:C (2.79) BS03 ZN ? GO:0003676 ... O95639 38538052
    865546 8r8r:C (2.79) BS04 ZN ? GO:0003676 ... O95639 38538052
    865547 8r8s:A (1.11) BS01 FRU N/A GO:0005507 ... Q89EJ6 39002715
    865548 8r8s:A (1.11) BS02 CU N/A GO:0005507 ... Q89EJ6 39002715
    865549 8r8s:A (1.11) BS03 CU N/A GO:0005507 ... Q89EJ6 39002715
    865550 8r8t:A (2.9) BS01 ETA ? GO:0001568 ... Q9Y5Y0 38778100
    865551 8r8u:A (3.1) BS01 peptide N/A GO:0004668 ... Q9UM07 39528459
    865552 8r8u:A (3.1) BS02 CA N/A GO:0004668 ... Q9UM07 39528459
    865553 8r8u:A (3.1) BS03 CA N/A GO:0004668 ... Q9UM07 39528459
    865554 8r8u:A (3.1) BS04 CA N/A GO:0004668 ... Q9UM07 39528459
    865555 8r8u:A (3.1) BS05 CA N/A GO:0004668 ... Q9UM07 39528459
    865556 8r8u:A (3.1) BS06 CA N/A GO:0004668 ... Q9UM07 39528459
    865557 8r8u:B (3.1) BS01 peptide N/A GO:0004668 ... Q9UM07 39528459
    865558 8r8u:B (3.1) BS02 CA N/A GO:0004668 ... Q9UM07 39528459
    865559 8r8u:B (3.1) BS03 CA N/A GO:0004668 ... Q9UM07 39528459
    865560 8r8u:B (3.1) BS04 CA N/A GO:0004668 ... Q9UM07 39528459
    865561 8r8u:B (3.1) BS05 CA N/A GO:0004668 ... Q9UM07 39528459
    865562 8r8u:B (3.1) BS06 CA N/A GO:0004668 ... Q9UM07 39528459
    865563 8r8v:A (3.6) BS01 peptide N/A GO:0004668 ... Q9UM07 39528459
    865564 8r8v:A (3.6) BS02 CA N/A GO:0004668 ... Q9UM07 39528459
    865565 8r8v:A (3.6) BS03 CA N/A GO:0004668 ... Q9UM07 39528459
    865566 8r8v:A (3.6) BS04 CA N/A GO:0004668 ... Q9UM07 39528459
    865567 8r8v:A (3.6) BS05 CA N/A GO:0004668 ... Q9UM07 39528459
    865568 8r8v:A (3.6) BS06 CA N/A GO:0004668 ... Q9UM07 39528459
    865569 8r8v:B (3.6) BS01 peptide N/A GO:0004668 ... Q9UM07 39528459
    865570 8r8v:B (3.6) BS02 CA N/A GO:0004668 ... Q9UM07 39528459
    865571 8r8v:B (3.6) BS03 CA N/A GO:0004668 ... Q9UM07 39528459
    865572 8r8v:B (3.6) BS04 CA N/A GO:0004668 ... Q9UM07 39528459
    865573 8r8v:B (3.6) BS05 CA N/A GO:0004668 ... Q9UM07 39528459
    865574 8r8v:B (3.6) BS06 CA N/A GO:0004668 ... Q9UM07 39528459
    865575 8r8w:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 38355794
    865576 8r8x:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 38355794
    865577 8r8y:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 38355794
    865578 8r8z:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 38355794
    865579 8r90:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 38355794
    865580 8r91:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 38355794
    865581 8r92:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 38355794
    865582 8r93:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 38355794
    865583 8r94:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 38355794
    865584 8r95:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 38355794
    865585 8r96:A (2.46) BS01 RET N/A N/A N/A N/A
    865586 8r96:B (2.46) BS01 RET N/A N/A N/A N/A
    865587 8r96:C (2.46) BS01 RET N/A N/A N/A N/A
    865588 8r96:D (2.46) BS01 RET N/A N/A N/A N/A
    865589 8r96:E (2.46) BS01 RET N/A N/A N/A N/A
    865590 8r97:A (3.0) BS01 RET N/A N/A N/A N/A
    865591 8r97:B (3.0) BS01 RET N/A N/A N/A N/A
    865592 8r97:C (3.0) BS01 RET N/A N/A N/A N/A
    865593 8r97:D (3.0) BS01 RET N/A N/A N/A N/A
    865594 8r97:E (3.0) BS01 RET N/A N/A N/A N/A
    865595 8r97:F (3.0) BS01 RET N/A N/A N/A N/A
    865596 8r97:G (3.0) BS01 RET N/A N/A N/A N/A
    865597 8r97:H (3.0) BS01 RET N/A N/A N/A N/A
    865598 8r97:I (3.0) BS01 RET N/A N/A N/A N/A
    865599 8r97:K (3.0) BS01 RET N/A N/A N/A N/A
    865600 8r98:A (3.0) BS01 RET N/A N/A N/A N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).