SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    865801 8rbp:A (1.15) BS01 ZN N/A GO:0002009 ... P00918 38856178
    865802 8rbp:A (1.15) BS02 EA3 N/A GO:0002009 ... P00918 38856178
    865803 8rbq:A (3.32) BS01 FES N/A GO:0005886 ... C1DMA8 38890433
    865804 8rbq:B (3.32) BS01 SF4 N/A GO:0005886 ... C1DMA7 38890433
    865805 8rbq:B (3.32) BS02 SF4 N/A GO:0005886 ... C1DMA7 38890433
    865806 8rbq:C (3.32) BS01 FMN N/A GO:0005886 ... C1DMA6 38890433
    865807 8rbq:C (3.32) BS02 SF4 N/A GO:0005886 ... C1DMA6 38890433
    865808 8rbq:C (3.32) BS03 SF4 N/A GO:0005886 ... C1DMA6 38890433
    865809 8rbq:D (3.32) BS01 RBF N/A GO:0005886 ... C1DMA5 38890433
    865810 8rbq:E (3.32) BS01 FES N/A GO:0005886 ... Q9F5Y1 38890433
    865811 8rbq:G (3.32) BS01 FMN N/A GO:0005886 ... C1DMA4 38890433
    865812 8rbu:A (2.7) BS01 peptide ? GO:0006955 ... Q5S3G3 38742159
    865813 8rbv:A (1.8) BS01 peptide ? GO:0006955 ... Q53Z42 38742159
    865814 8rbx:A (4.1) BS01 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38570683
    865815 8rbx:A (4.1) BS02 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38570683
    865816 8rbx:A (4.1) BS03 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38570683
    865817 8rbx:A (4.1) BS04 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38570683
    865818 8rbx:B (4.1) BS01 rna 2.7.7.6 GO:0000428 ... I3LGP4 38570683
    865819 8rbx:B (4.1) BS02 dna 2.7.7.6 GO:0000428 ... I3LGP4 38570683
    865820 8rbx:B (4.1) BS03 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38570683
    865821 8rbx:C (4.1) BS01 ZN ? GO:0000428 ... I3LCH3 38570683
    865822 8rbx:E (4.1) BS01 dna ? GO:0001054 ... I3LSI7 38570683
    865823 8rbx:I (4.1) BS01 ZN ? GO:0000428 ... P60899 38570683
    865824 8rbx:I (4.1) BS02 ZN ? GO:0000428 ... P60899 38570683
    865825 8rbx:J (4.1) BS01 ZN ? GO:0000428 ... A0A4X1VYD0 38570683
    865826 8rbx:L (4.1) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38570683
    865827 8rbx:M (4.1) BS01 dna ? GO:0000786 ... Q6NXT2 38570683
    865828 8rbx:M (4.1) BS02 dna ? GO:0000786 ... Q6NXT2 38570683
    865829 8rbx:O (4.1) BS01 dna ? GO:0000781 ... P62805 38570683
    865830 8rbx:O (4.1) BS02 dna ? GO:0000781 ... P62805 38570683
    865831 8rbx:Q (4.1) BS01 dna ? GO:0000786 ... P0C0S8 38570683
    865832 8rbx:Q (4.1) BS02 dna ? GO:0000786 ... P0C0S8 38570683
    865833 8rbx:R (4.1) BS01 dna ? GO:0000786 ... P06899 38570683
    865834 8rbx:S (4.1) BS01 dna ? GO:0000786 ... Q6NXT2 38570683
    865835 8rbx:S (4.1) BS02 dna ? GO:0000786 ... Q6NXT2 38570683
    865836 8rbx:U (4.1) BS01 dna ? GO:0000781 ... P62805 38570683
    865837 8rbx:U (4.1) BS02 dna ? GO:0000781 ... P62805 38570683
    865838 8rbx:V (4.1) BS01 dna ? GO:0000786 ... P0C0S8 38570683
    865839 8rbx:V (4.1) BS02 dna ? GO:0000786 ... P0C0S8 38570683
    865840 8rbx:W (4.1) BS01 dna ? GO:0000786 ... P06899 38570683
    865841 8rbx:W (4.1) BS02 dna ? GO:0000786 ... P06899 38570683
    865842 8rbx:Z (4.1) BS01 rna ? GO:0000122 ... O00267 38570683
    865843 8rbx:b (4.1) BS01 peptide ? GO:0005515 ... Q9H0H0 38570683
    865844 8rbx:b (4.1) BS02 peptide ? GO:0005515 ... Q9H0H0 38570683
    865845 8rbx:f (4.1) BS01 peptide ? GO:0004888 ... Q9UL03 38570683
    865846 8rbx:f (4.1) BS02 MN ? GO:0004888 ... Q9UL03 38570683
    865847 8rbx:g (4.1) BS01 peptide ? GO:0000077 ... Q9NVH2 38570683
    865848 8rbx:g (4.1) BS02 peptide ? GO:0000077 ... Q9NVH2 38570683
    865849 8rbx:k (4.1) BS01 ZN 3.1.27.- GO:0004521 ... Q5TA45 38570683
    865850 8rbx:k (4.1) BS02 ZN 3.1.27.- GO:0004521 ... Q5TA45 38570683
    865851 8rbx:q (4.1) BS01 MN 3.1.3.16 GO:0000159 ... P67775 38570683
    865852 8rbx:v (4.1) BS01 peptide ? GO:0003723 ... Q8WX92 38570683
    865853 8rbz:b (3.7) BS01 peptide ? GO:0005515 ... Q9H0H0 38570683
    865854 8rbz:c (3.7) BS01 peptide ? GO:0000724 ... Q68E01 38570683
    865855 8rbz:f (3.7) BS01 peptide ? GO:0004888 ... Q9UL03 38570683
    865856 8rbz:g (3.7) BS01 peptide ? GO:0000077 ... Q9NVH2 38570683
    865857 8rbz:g (3.7) BS02 peptide ? GO:0000077 ... Q9NVH2 38570683
    865858 8rbz:k (3.7) BS01 ZN 3.1.27.- GO:0004521 ... Q5TA45 38570683
    865859 8rbz:k (3.7) BS02 ZN 3.1.27.- GO:0004521 ... Q5TA45 38570683
    865860 8rbz:q (3.7) BS01 MN 3.1.3.16 GO:0000159 ... P67775 38570683
    865861 8rbz:q (3.7) BS02 MN 3.1.3.16 GO:0000159 ... P67775 38570683
    865862 8rc0:A (3.2) BS01 rna ? GO:0000244 ... Q6P2Q9 38467877
    865863 8rc0:C (3.2) BS01 GTP ? GO:0000398 ... Q15029 38467877
    865864 8rc0:E (3.2) BS01 rna ? GO:0000244 ... O94906 38467877
    865865 8rc0:h (3.2) BS01 rna ? GO:0000387 ... P14678 38467877
    865866 8rc0:i (3.2) BS01 rna ? GO:0000243 ... P62314 38467877
    865867 8rc0:j (3.2) BS01 rna ? GO:0000245 ... P62316 38467877
    865868 8rc0:m (3.2) BS01 rna ? GO:0000387 ... P62306 38467877
    865869 8rc0:n (3.2) BS01 rna ? GO:0000245 ... P62308 38467877
    865870 8rc1:A (3.7) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38431715
    865871 8rc1:B (3.7) BS01 GDP ? GO:0000226 ... P02554 38431715
    865872 8rc1:C (3.7) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38431715
    865873 8rc1:D (3.7) BS01 GDP ? GO:0000226 ... P02554 38431715
    865874 8rc2:A (3.1) BS01 rna N/A N/A A0A333ESG5 39468082
    865875 8rc2:A (3.1) BS02 dna N/A N/A A0A333ESG5 39468082
    865876 8rc2:A (3.1) BS03 dna N/A N/A A0A333ESG5 39468082
    865877 8rc2:B (3.1) BS01 rna N/A N/A A0A333ESG5 39468082
    865878 8rc2:B (3.1) BS02 dna N/A N/A A0A333ESG5 39468082
    865879 8rc2:C (3.1) BS01 rna N/A N/A A0A333ESG5 39468082
    865880 8rc2:C (3.1) BS02 dna N/A N/A A0A333ESG5 39468082
    865881 8rc2:D (3.1) BS01 rna N/A N/A A0A333ESG5 39468082
    865882 8rc2:D (3.1) BS02 dna N/A N/A A0A333ESG5 39468082
    865883 8rc2:E (3.1) BS01 rna N/A N/A A0A333ESG5 39468082
    865884 8rc2:E (3.1) BS02 dna N/A N/A A0A333ESG5 39468082
    865885 8rc2:F (3.1) BS01 rna N/A N/A A0A8G1XN67 39468082
    865886 8rc2:F (3.1) BS02 dna N/A N/A A0A8G1XN67 39468082
    865887 8rc2:F (3.1) BS03 dna N/A N/A A0A8G1XN67 39468082
    865888 8rc2:G (3.1) BS01 dna N/A N/A A0A7Z7WW72 39468082
    865889 8rc2:G (3.1) BS02 dna N/A N/A A0A7Z7WW72 39468082
    865890 8rc2:G (3.1) BS03 ZN N/A N/A A0A7Z7WW72 39468082
    865891 8rc2:L (3.1) BS01 rna N/A N/A A0A333ESG5 39468082
    865892 8rc3:A (3.0) BS01 rna N/A N/A A0A379PIR9 39468082
    865893 8rc3:A (3.0) BS02 dna N/A N/A A0A379PIR9 39468082
    865894 8rc3:B (3.0) BS01 rna N/A N/A A0A379PIR9 39468082
    865895 8rc3:B (3.0) BS02 dna N/A N/A A0A379PIR9 39468082
    865896 8rc3:C (3.0) BS01 rna N/A N/A A0A379PIR9 39468082
    865897 8rc3:C (3.0) BS02 dna N/A N/A A0A379PIR9 39468082
    865898 8rc3:D (3.0) BS01 rna N/A N/A A0A379PIR9 39468082
    865899 8rc3:D (3.0) BS02 dna N/A N/A A0A379PIR9 39468082
    865900 8rc3:E (3.0) BS01 rna N/A N/A A0A379PIR9 39468082
    865901 8rc3:E (3.0) BS02 dna N/A N/A A0A379PIR9 39468082
    865902 8rc3:F (3.0) BS01 rna N/A N/A A0A379PL53 39468082
    865903 8rc3:F (3.0) BS02 dna N/A N/A A0A379PL53 39468082
    865904 8rc3:F (3.0) BS03 dna N/A N/A A0A379PL53 39468082
    865905 8rc3:G (3.0) BS01 dna N/A N/A A0A379PIR4 39468082
    865906 8rc3:G (3.0) BS02 dna N/A N/A A0A379PIR4 39468082
    865907 8rc3:G (3.0) BS03 ZN N/A N/A A0A379PIR4 39468082
    865908 8rc3:M (3.0) BS01 rna N/A N/A A0A379PNK2 39468082
    865909 8rc3:M (3.0) BS02 dna N/A N/A A0A379PNK2 39468082
    865910 8rc4:k (3.1) BS01 ZN 3.1.27.- GO:0004521 ... Q5TA45 38570683
    865911 8rc4:k (3.1) BS02 ZN 3.1.27.- GO:0004521 ... Q5TA45 38570683
    865912 8rc4:q (3.1) BS01 MN 3.1.3.16 GO:0000159 ... P67775 38570683
    865913 8rc4:q (3.1) BS02 MN 3.1.3.16 GO:0000159 ... P67775 38570683
    865914 8rc8:A (2.005) BS01 MGD N/A GO:0005515 ... Q72EJ1 39148770
    865915 8rc8:A (2.005) BS02 MGD N/A GO:0005515 ... Q72EJ1 39148770
    865916 8rc8:A (2.005) BS03 SF4 N/A GO:0005515 ... Q72EJ1 39148770
    865917 8rc8:B (2.005) BS01 SF4 N/A GO:0030313 ... Q72EJ0 39148770
    865918 8rc8:B (2.005) BS02 SF4 N/A GO:0030313 ... Q72EJ0 39148770
    865919 8rc8:B (2.005) BS03 SF4 N/A GO:0030313 ... Q72EJ0 39148770
    865920 8rc9:A (2.06) BS01 MGD N/A GO:0005515 ... Q72EJ1 39148770
    865921 8rc9:A (2.06) BS02 MGD N/A GO:0005515 ... Q72EJ1 39148770
    865922 8rc9:A (2.06) BS03 SF4 N/A GO:0005515 ... Q72EJ1 39148770
    865923 8rc9:A (2.06) BS04 OXY N/A GO:0005515 ... Q72EJ1 39148770
    865924 8rc9:B (2.06) BS01 SF4 N/A GO:0030313 ... Q72EJ0 39148770
    865925 8rc9:B (2.06) BS02 SF4 N/A GO:0030313 ... Q72EJ0 39148770
    865926 8rc9:B (2.06) BS03 SF4 N/A GO:0030313 ... Q72EJ0 39148770
    865927 8rca:A (1.664) BS01 MGD N/A GO:0005515 ... Q72EJ1 39148770
    865928 8rca:A (1.664) BS02 MGD N/A GO:0005515 ... Q72EJ1 39148770
    865929 8rca:A (1.664) BS03 SF4 N/A GO:0005515 ... Q72EJ1 39148770
    865930 8rca:B (1.664) BS01 SF4 N/A GO:0030313 ... Q72EJ0 39148770
    865931 8rca:B (1.664) BS02 SF4 N/A GO:0030313 ... Q72EJ0 39148770
    865932 8rca:B (1.664) BS03 SF4 N/A GO:0030313 ... Q72EJ0 39148770
    865933 8rcb:A (2.11) BS01 MGD N/A GO:0005515 ... Q72EJ1 39148770
    865934 8rcb:A (2.11) BS02 MGD N/A GO:0005515 ... Q72EJ1 39148770
    865935 8rcb:A (2.11) BS03 SF4 N/A GO:0005515 ... Q72EJ1 39148770
    865936 8rcb:A (2.11) BS04 OXY N/A GO:0005515 ... Q72EJ1 39148770
    865937 8rcb:B (2.11) BS01 SF4 N/A GO:0030313 ... Q72EJ0 39148770
    865938 8rcb:B (2.11) BS02 SF4 N/A GO:0030313 ... Q72EJ0 39148770
    865939 8rcb:B (2.11) BS03 SF4 N/A GO:0030313 ... Q72EJ0 39148770
    865940 8rcc:A (2.301) BS01 MGD N/A GO:0005515 ... Q72EJ1 39148770
    865941 8rcc:A (2.301) BS02 MGD N/A GO:0005515 ... Q72EJ1 39148770
    865942 8rcc:A (2.301) BS03 SF4 N/A GO:0005515 ... Q72EJ1 39148770
    865943 8rcc:B (2.301) BS01 SF4 N/A GO:0030313 ... Q72EJ0 39148770
    865944 8rcc:B (2.301) BS02 SF4 N/A GO:0030313 ... Q72EJ0 39148770
    865945 8rcc:B (2.301) BS03 SF4 N/A GO:0030313 ... Q72EJ0 39148770
    865946 8rcd:A (3.2) BS01 dna N/A GO:0000150 ... Q06609 39178838
    865947 8rcd:A (3.2) BS02 ATP N/A GO:0000150 ... Q06609 39178838
    865948 8rcd:A (3.2) BS03 CA N/A GO:0000150 ... Q06609 39178838
    865949 8rcd:A (3.2) BS04 CA N/A GO:0000150 ... Q06609 39178838
    865950 8rcd:A (3.2) BS05 ATP N/A GO:0000150 ... Q06609 39178838
    865951 8rcd:B (3.2) BS01 dna N/A GO:0000150 ... Q06609 39178838
    865952 8rcd:B (3.2) BS02 ATP N/A GO:0000150 ... Q06609 39178838
    865953 8rcd:B (3.2) BS03 CA N/A GO:0000150 ... Q06609 39178838
    865954 8rcd:B (3.2) BS04 CA N/A GO:0000150 ... Q06609 39178838
    865955 8rcd:B (3.2) BS05 ATP N/A GO:0000150 ... Q06609 39178838
    865956 8rcd:C (3.2) BS01 dna N/A GO:0000150 ... Q06609 39178838
    865957 8rcd:C (3.2) BS02 ATP N/A GO:0000150 ... Q06609 39178838
    865958 8rcd:C (3.2) BS03 CA N/A GO:0000150 ... Q06609 39178838
    865959 8rcd:C (3.2) BS04 CA N/A GO:0000150 ... Q06609 39178838
    865960 8rcd:C (3.2) BS05 ATP N/A GO:0000150 ... Q06609 39178838
    865961 8rcd:D (3.2) BS01 dna N/A GO:0000150 ... Q06609 39178838
    865962 8rcd:D (3.2) BS02 ATP N/A GO:0000150 ... Q06609 39178838
    865963 8rcd:D (3.2) BS03 CA N/A GO:0000150 ... Q06609 39178838
    865964 8rcd:D (3.2) BS04 CA N/A GO:0000150 ... Q06609 39178838
    865965 8rcd:D (3.2) BS05 ATP N/A GO:0000150 ... Q06609 39178838
    865966 8rcd:E (3.2) BS01 dna N/A GO:0000150 ... Q06609 39178838
    865967 8rcd:E (3.2) BS02 ATP N/A GO:0000150 ... Q06609 39178838
    865968 8rcd:E (3.2) BS03 CA N/A GO:0000150 ... Q06609 39178838
    865969 8rcd:E (3.2) BS04 CA N/A GO:0000150 ... Q06609 39178838
    865970 8rcd:E (3.2) BS05 ATP N/A GO:0000150 ... Q06609 39178838
    865971 8rcd:F (3.2) BS01 dna N/A GO:0000150 ... Q06609 39178838
    865972 8rcd:F (3.2) BS02 ATP N/A GO:0000150 ... Q06609 39178838
    865973 8rcd:F (3.2) BS03 CA N/A GO:0000150 ... Q06609 39178838
    865974 8rcd:F (3.2) BS04 CA N/A GO:0000150 ... Q06609 39178838
    865975 8rcd:F (3.2) BS05 ATP N/A GO:0000150 ... Q06609 39178838
    865976 8rcd:G (3.2) BS01 dna N/A GO:0000150 ... Q06609 39178838
    865977 8rcd:G (3.2) BS02 ATP N/A GO:0000150 ... Q06609 39178838
    865978 8rcd:G (3.2) BS03 CA N/A GO:0000150 ... Q06609 39178838
    865979 8rcd:G (3.2) BS04 CA N/A GO:0000150 ... Q06609 39178838
    865980 8rcd:G (3.2) BS05 ATP N/A GO:0000150 ... Q06609 39178838
    865981 8rcd:H (3.2) BS01 dna N/A GO:0000150 ... Q06609 39178838
    865982 8rcd:H (3.2) BS02 ATP N/A GO:0000150 ... Q06609 39178838
    865983 8rcd:H (3.2) BS03 CA N/A GO:0000150 ... Q06609 39178838
    865984 8rce:A (3.0) BS01 WUE N/A N/A Q07869 38865743
    865985 8rcf:A (3.4) BS01 dna N/A GO:0000150 ... Q06609 39178838
    865986 8rcf:A (3.4) BS02 ATP N/A GO:0000150 ... Q06609 39178838
    865987 8rcf:A (3.4) BS03 CA N/A GO:0000150 ... Q06609 39178838
    865988 8rcf:A (3.4) BS04 ATP N/A GO:0000150 ... Q06609 39178838
    865989 8rcf:B (3.4) BS01 dna N/A GO:0000150 ... Q06609 39178838
    865990 8rcf:B (3.4) BS02 dna N/A GO:0000150 ... Q06609 39178838
    865991 8rcf:B (3.4) BS03 ATP N/A GO:0000150 ... Q06609 39178838
    865992 8rcf:B (3.4) BS04 CA N/A GO:0000150 ... Q06609 39178838
    865993 8rcf:B (3.4) BS05 ATP N/A GO:0000150 ... Q06609 39178838
    865994 8rcf:C (3.4) BS01 dna N/A GO:0000150 ... Q06609 39178838
    865995 8rcf:C (3.4) BS02 dna N/A GO:0000150 ... Q06609 39178838
    865996 8rcf:C (3.4) BS03 ATP N/A GO:0000150 ... Q06609 39178838
    865997 8rcf:C (3.4) BS04 CA N/A GO:0000150 ... Q06609 39178838
    865998 8rcf:C (3.4) BS05 ATP N/A GO:0000150 ... Q06609 39178838
    865999 8rcf:D (3.4) BS01 dna N/A GO:0000150 ... Q06609 39178838
    866000 8rcf:D (3.4) BS02 dna N/A GO:0000150 ... Q06609 39178838

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).