SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    866401 8rd8:C1 (2.62) BS01 rna ? GO:0003735 ... A0A0M3V9E8 38355796
    866402 8rd8:CT (2.62) BS01 rna ? GO:0003676 ... A0A0M4T6V9 38355796
    866403 8rd8:Cl (2.62) BS01 rna ? GO:0002181 ... A0A0M3V8Q0 38355796
    866404 8rd8:D (2.62) BS01 rna ? GO:0005840 ... A0A0M4TFB0 38355796
    866405 8rd8:Dm (2.62) BS01 rna ? GO:0003723 ... A0A0M4TE52 38355796
    866406 8rd8:E5 (2.62) BS01 rna ? GO:0003723 ... A0A0M3V8J0 38355796
    866407 8rd8:E9 (2.62) BS01 rna ? GO:0003735 ... A0A0M4U627 38355796
    866408 8rd8:F (2.62) BS01 rna ? GO:0003723 ... A0A0M4T6M9 38355796
    866409 8rd8:F7 (2.62) BS01 rna ? GO:0000049 ... A0A0M4T1L5 38355796
    866410 8rd8:F7 (2.62) BS02 rna ? GO:0000049 ... A0A0M4T1L5 38355796
    866411 8rd8:FG (2.62) BS01 rna ? GO:0003735 ... A0A0M4U628 38355796
    866412 8rd8:GR (2.62) BS01 rna ? GO:0002181 ... A0A0M5MKV2 38355796
    866413 8rd8:GS (2.62) BS01 rna ? GO:0000049 ... A0A0M3V8N5 38355796
    866414 8rd8:H (2.62) BS01 rna ? GO:0003746 ... A0A0M4U5B4 38355796
    866415 8rd8:HK (2.62) BS01 rna ? GO:0003735 ... A0A0M3V8P8 38355796
    866416 8rd8:IX (2.62) BS01 rna ? GO:0003729 ... A0A0M4TBP4 38355796
    866417 8rd8:JY (2.62) BS01 rna ? GO:0000049 ... A0A0M4TE68 38355796
    866418 8rd8:Je (2.62) BS01 rna ? GO:0003735 ... A0A0M5MJS2 38355796
    866419 8rd8:Je (2.62) BS02 rna ? GO:0003735 ... A0A0M5MJS2 38355796
    866420 8rd8:KU (2.62) BS01 rna ? GO:0003735 ... A0A0M3V8P6 38355796
    866421 8rd8:Kd (2.62) BS01 rna ? GO:0003735 ... A0A0M4T6V1 38355796
    866422 8rd8:L6 (2.62) BS01 rna ? GO:0000049 ... A0A0M4U4C3 38355796
    866423 8rd8:Lg (2.62) BS01 rna ? GO:0000049 ... A0A0M3V8J3 38355796
    866424 8rd8:MB (2.62) BS01 rna ? GO:0003735 ... A0A0M4U611 38355796
    866425 8rd8:MM (2.62) BS01 rna ? GO:0000049 ... A0A0M5MJL8 38355796
    866426 8rd8:NV (2.62) BS01 rna ? GO:0003735 ... A0A0M4SY21 38355796
    866427 8rd8:Nc (2.62) BS01 rna ? GO:0003735 ... A0A0M4TUJ2 38355796
    866428 8rd8:Nc (2.62) BS02 rna ? GO:0003735 ... A0A0M4TUJ2 38355796
    866429 8rd8:OL (2.62) BS01 rna ? GO:0003735 ... A0A0M4TF29 38355796
    866430 8rd8:OL (2.62) BS02 rna ? GO:0003735 ... A0A0M4TF29 38355796
    866431 8rd8:Oi (2.62) BS01 rna ? GO:0003735 ... A0A0M4TV08 38355796
    866432 8rd8:Oi (2.62) BS02 rna ? GO:0003735 ... A0A0M4TV08 38355796
    866433 8rd8:PO (2.62) BS01 rna ? GO:0000027 ... A0A0M5MJR6 38355796
    866434 8rd8:Pj (2.62) BS01 rna ? GO:0003735 ... A0A0M4T275 38355796
    866435 8rd8:QZ (2.62) BS01 rna ? GO:0003735 ... A0A0M4U401 38355796
    866436 8rd8:Qb (2.62) BS01 rna ? GO:0003723 ... A0A0M5TIS3 38355796
    866437 8rd8:R3 (2.62) BS01 rna ? GO:0003735 ... A0A0M5MK69 38355796
    866438 8rd8:RF (2.62) BS01 rna ? GO:0003735 ... A0A0M4SWS6 38355796
    866439 8rd8:SP (2.62) BS01 rna ? GO:0000028 ... A0A0M4TUJ8 38355796
    866440 8rd8:Sn (2.62) BS01 rna ? GO:0003735 ... A0A0M5MJH9 38355796
    866441 8rd8:TI (2.62) BS01 rna ? GO:0003723 ... A0A0M4TE60 38355796
    866442 8rd8:To (2.62) BS01 rna ? GO:0003723 ... A0A0M4T3R2 38355796
    866443 8rd8:UC (2.62) BS01 rna ? GO:0003723 ... A0A0M4U726 38355796
    866444 8rd8:UC (2.62) BS02 rna ? GO:0003723 ... A0A0M4U726 38355796
    866445 8rd8:VH (2.62) BS01 rna ? GO:0003735 ... A0A0M4TUE5 38355796
    866446 8rd8:VH (2.62) BS02 rna ? GO:0003735 ... A0A0M4TUE5 38355796
    866447 8rd8:WD (2.62) BS01 rna ? GO:0003735 ... A0A0M4T6Y7 38355796
    866448 8rd8:XE (2.62) BS01 rna ? GO:0003735 ... A0A0M4TBX9 38355796
    866449 8rd8:YW (2.62) BS01 rna ? GO:0003735 ... A0A0M4SWR7 38355796
    866450 8rd8:YW (2.62) BS02 rna ? GO:0003735 ... A0A0M4SWR7 38355796
    866451 8rd8:aA (2.62) BS01 rna ? GO:0003735 ... A0A0M4SWQ6 38355796
    866452 8rd8:bk (2.62) BS01 rna ? GO:0003735 ... A0A0M4SWV1 38355796
    866453 8rd8:dh (2.62) BS01 rna ? GO:0003735 ... A0A0M4U4I0 38355796
    866454 8rd8:ep (2.62) BS01 rna ? GO:0003735 ... A0A0M4U3Z5 38355796
    866455 8rd8:fJ (2.62) BS01 rna ? GO:0003735 ... A0A0M4SX87 38355796
    866456 8rd9:A (4.3) BS01 A1H0C N/A N/A Q8TD43 39828793
    866457 8rd9:A (4.3) BS02 CLR N/A N/A Q8TD43 39828793
    866458 8rd9:A (4.3) BS03 CLR N/A N/A Q8TD43 39828793
    866459 8rd9:C (4.3) BS01 CLR N/A N/A Q8TD43 39828793
    866460 8rd9:C (4.3) BS02 CLR N/A N/A Q8TD43 39828793
    866461 8rd9:C (4.3) BS03 A1H0C N/A N/A Q8TD43 39828793
    866462 8rd9:C (4.3) BS04 CLR N/A N/A Q8TD43 39828793
    866463 8rd9:D (4.3) BS01 CLR N/A N/A Q8TD43 39828793
    866464 8rd9:D (4.3) BS02 CLR N/A N/A Q8TD43 39828793
    866465 8rd9:D (4.3) BS03 CLR N/A N/A Q8TD43 39828793
    866466 8rd9:D (4.3) BS04 A1H0C N/A N/A Q8TD43 39828793
    866467 8rd9:D (4.3) BS05 CLR N/A N/A Q8TD43 39828793
    866468 8rd9:E (4.3) BS01 CLR N/A N/A Q8TD43 39828793
    866469 8rd9:E (4.3) BS02 CLR N/A N/A Q8TD43 39828793
    866470 8rd9:E (4.3) BS03 CLR N/A N/A Q8TD43 39828793
    866471 8rda:H (2.29) BS01 A1H1A N/A N/A N/A 38799664
    866472 8rdb:A (1.37) BS01 FE N/A GO:0005737 ... P05326 N/A
    866473 8rdb:A (1.37) BS02 ACV N/A GO:0005737 ... P05326 N/A
    866474 8rdc:A (1.7) BS01 YNO N/A GO:0002317 ... P09382 N/A
    866475 8rdc:B (1.7) BS01 YNO N/A GO:0002317 ... P09382 N/A
    866476 8rde:A (3.7) BS01 CA N/A N/A E9Q0B5 39754272
    866477 8rde:A (3.7) BS02 CA N/A N/A E9Q0B5 39754272
    866478 8rde:A (3.7) BS03 CA N/A N/A E9Q0B5 39754272
    866479 8rde:A (3.7) BS04 CA N/A N/A E9Q0B5 39754272
    866480 8rde:D (3.7) BS01 CA N/A N/A E9Q0B5 39754272
    866481 8rde:D (3.7) BS02 CA N/A N/A E9Q0B5 39754272
    866482 8rde:D (3.7) BS03 CA N/A N/A E9Q0B5 39754272
    866483 8rde:D (3.7) BS04 CA N/A N/A E9Q0B5 39754272
    866484 8rdf:H (2.74) BS01 A1H09 N/A N/A N/A 38799664
    866485 8rdg:A (1.9) BS01 NAD N/A N/A O73960 N/A
    866486 8rdg:B (1.9) BS01 NAD N/A N/A O73960 N/A
    866487 8rdh:A (2.4) BS01 NAD N/A N/A O73960 N/A
    866488 8rdh:A (2.4) BS02 GFB N/A N/A O73960 N/A
    866489 8rdh:B (2.4) BS01 NAD N/A N/A O73960 N/A
    866490 8rdh:B (2.4) BS02 GFB N/A N/A O73960 N/A
    866491 8rdi:A (3.1) BS01 NAD N/A N/A O73960 N/A
    866492 8rdi:A (3.1) BS02 GFB N/A N/A O73960 N/A
    866493 8rdi:B (3.1) BS01 NAD N/A N/A O73960 N/A
    866494 8rdi:B (3.1) BS02 GFB N/A N/A O73960 N/A
    866495 8rdi:C (3.1) BS01 NAD N/A N/A O73960 N/A
    866496 8rdi:C (3.1) BS02 GFB N/A N/A O73960 N/A
    866497 8rdi:D (3.1) BS01 NAD N/A N/A O73960 N/A
    866498 8rdi:D (3.1) BS02 GFB N/A N/A O73960 N/A
    866499 8rdj:C (2.62) BS01 dna 2.7.7.6 GO:0000428 ... P46818 38428394
    866500 8rdj:C (2.62) BS02 dna 2.7.7.6 GO:0000428 ... P46818 38428394
    866501 8rdj:C (2.62) BS03 rna 2.7.7.6 GO:0000428 ... P46818 38428394
    866502 8rdj:D (2.62) BS01 dna 2.7.7.6 GO:0000287 ... A0A6C0M5W0 38428394
    866503 8rdj:D (2.62) BS02 dna 2.7.7.6 GO:0000287 ... A0A6C0M5W0 38428394
    866504 8rdj:D (2.62) BS03 MG 2.7.7.6 GO:0000287 ... A0A6C0M5W0 38428394
    866505 8rdj:E (2.62) BS01 dna 2.7.7.6 GO:0000428 ... A0A6C0M829 38428394
    866506 8rdj:E (2.62) BS02 ZN 2.7.7.6 GO:0000428 ... A0A6C0M829 38428394
    866507 8rdj:F (2.62) BS01 dna N/A N/A N/A 38428394
    866508 8rdj:F (2.62) BS02 dna N/A N/A N/A 38428394
    866509 8rdj:I (2.62) BS01 FE N/A GO:0004784 ... N/A 38428394
    866510 8rdj:L (2.62) BS01 SAH N/A N/A N/A 38428394
    866511 8rdj:N (2.62) BS01 FE N/A GO:0004784 ... N/A 38428394
    866512 8rdk:A (2.0) BS01 ZN 2.7.11.1 GO:0004672 ... Q8TF76 39067440
    866513 8rdk:A (2.0) BS02 YQT 2.7.11.1 GO:0004672 ... Q8TF76 39067440
    866514 8rdl:A (2.1) BS01 SAH N/A GO:0008168 ... A0A068QT41 39185606
    866515 8rdm:A (1.75) BS01 SAH N/A GO:0008168 ... A0A8T8HXW2 39185606
    866516 8rdn:A (2.2) BS01 SAH N/A GO:0008168 ... A0A8T8HXW2 39185606
    866517 8rdn:A (2.2) BS02 YRH N/A GO:0008168 ... A0A8T8HXW2 39185606
    866518 8rdn:B (2.2) BS01 SAH N/A GO:0008168 ... A0A8T8HXW2 39185606
    866519 8rdn:B (2.2) BS02 YRH N/A GO:0008168 ... A0A8T8HXW2 39185606
    866520 8rdn:C (2.2) BS01 SAH N/A GO:0008168 ... A0A8T8HXW2 39185606
    866521 8rdn:C (2.2) BS02 YRH N/A GO:0008168 ... A0A8T8HXW2 39185606
    866522 8rdn:D (2.2) BS01 SAH N/A GO:0008168 ... A0A8T8HXW2 39185606
    866523 8rdn:D (2.2) BS02 YRH N/A GO:0008168 ... A0A8T8HXW2 39185606
    866524 8rdo:A (1.75) BS01 SAH N/A GO:0008168 ... A0A8T8HXW2 39185606
    866525 8rdo:A (1.75) BS02 YRD N/A GO:0008168 ... A0A8T8HXW2 39185606
    866526 8rdp:A (1.76) BS01 ZN ? GO:0046872 ... A4TVL0 38552426
    866527 8rdp:A (1.76) BS02 A1HZ7 ? GO:0046872 ... A4TVL0 38552426
    866528 8rdp:B (1.76) BS01 ZN ? GO:0046872 ... A4TVL0 38552426
    866529 8rdp:B (1.76) BS02 A1HZ7 ? GO:0046872 ... A4TVL0 38552426
    866530 8rdp:C (1.76) BS01 ZN ? GO:0046872 ... A4TVL0 38552426
    866531 8rdp:C (1.76) BS02 A1HZ7 ? GO:0046872 ... A4TVL0 38552426
    866532 8rdq:A (2.03) BS01 ZN ? GO:0046872 ... A4TVL0 38552426
    866533 8rdq:A (2.03) BS02 YQO ? GO:0046872 ... A4TVL0 38552426
    866534 8rdq:B (2.03) BS01 ZN ? GO:0046872 ... A4TVL0 38552426
    866535 8rdq:B (2.03) BS02 YQO ? GO:0046872 ... A4TVL0 38552426
    866536 8rdq:C (2.03) BS01 ZN ? GO:0046872 ... A4TVL0 38552426
    866537 8rdr:A (1.58) BS01 ZN ? GO:0046872 ... A4TVL0 38552426
    866538 8rdr:A (1.58) BS02 A1HZ3 ? GO:0046872 ... A4TVL0 38552426
    866539 8rdr:B (1.58) BS01 ZN ? GO:0046872 ... A4TVL0 38552426
    866540 8rdr:B (1.58) BS02 A1HZ3 ? GO:0046872 ... A4TVL0 38552426
    866541 8rdr:C (1.58) BS01 ZN ? GO:0046872 ... A4TVL0 38552426
    866542 8rdr:C (1.58) BS02 A1HZ3 ? GO:0046872 ... A4TVL0 38552426
    866543 8rds:A (2.0) BS01 ZN ? GO:0046872 ... A4TVL0 38552426
    866544 8rds:A (2.0) BS02 A1HZ6 ? GO:0046872 ... A4TVL0 38552426
    866545 8rds:B (2.0) BS01 ZN ? GO:0046872 ... A4TVL0 38552426
    866546 8rds:B (2.0) BS02 A1HZ6 ? GO:0046872 ... A4TVL0 38552426
    866547 8rds:C (2.0) BS01 ZN ? GO:0046872 ... A4TVL0 38552426
    866548 8rdt:A (1.95) BS01 ZN ? GO:0046872 ... A4TVL0 38552426
    866549 8rdt:A (1.95) BS02 A1HZ2 ? GO:0046872 ... A4TVL0 38552426
    866550 8rdt:B (1.95) BS01 ZN ? GO:0046872 ... A4TVL0 38552426
    866551 8rdt:B (1.95) BS02 A1HZ2 ? GO:0046872 ... A4TVL0 38552426
    866552 8rdt:C (1.95) BS01 ZN ? GO:0046872 ... A4TVL0 38552426
    866553 8rdu:A (2.3) BS01 rna N/A N/A A0A8M0FGU0 38834066
    866554 8rdu:A (2.3) BS02 dna N/A N/A A0A8M0FGU0 38834066
    866555 8rdu:A (2.3) BS03 dna N/A N/A A0A8M0FGU0 38834066
    866556 8rdu:B (2.3) BS01 rna N/A GO:0003735 ... A0A139X9A4 38834066
    866557 8rdu:C (2.3) BS01 rna N/A N/A A0A8J0PCL5 38834066
    866558 8rdu:C (2.3) BS02 dna N/A N/A A0A8J0PCL5 38834066
    866559 8rdu:C (2.3) BS03 ZN N/A N/A A0A8J0PCL5 38834066
    866560 8rdu:C (2.3) BS04 ZN N/A N/A A0A8J0PCL5 38834066
    866561 8rdu:D (2.3) BS01 dna N/A N/A A0A8J0PCL3 38834066
    866562 8rdu:D (2.3) BS02 ATP N/A N/A A0A8J0PCL3 38834066
    866563 8rdu:E (2.3) BS01 dna N/A N/A A0A8J0PCL3 38834066
    866564 8rdu:E (2.3) BS02 ATP N/A N/A A0A8J0PCL3 38834066
    866565 8rdu:E (2.3) BS03 ATP N/A N/A A0A8J0PCL3 38834066
    866566 8rdu:F (2.3) BS01 ATP N/A N/A A0A8J0PCL3 38834066
    866567 8rdu:F (2.3) BS02 ATP N/A N/A A0A8J0PCL3 38834066
    866568 8rdu:G (2.3) BS01 rna N/A N/A A0A8J0PCL3 38834066
    866569 8rdu:G (2.3) BS02 peptide N/A N/A A0A8J0PCL3 38834066
    866570 8rdu:G (2.3) BS03 ATP N/A N/A A0A8J0PCL3 38834066
    866571 8rdu:G (2.3) BS04 ATP N/A N/A A0A8J0PCL3 38834066
    866572 8rdu:H (2.3) BS01 rna N/A N/A A0A8J0PCL3 38834066
    866573 8rdu:H (2.3) BS02 dna N/A N/A A0A8J0PCL3 38834066
    866574 8rdu:H (2.3) BS03 peptide N/A N/A A0A8J0PCL3 38834066
    866575 8rdu:H (2.3) BS04 ATP N/A N/A A0A8J0PCL3 38834066
    866576 8rdu:H (2.3) BS05 ATP N/A N/A A0A8J0PCL3 38834066
    866577 8rdu:I (2.3) BS01 dna N/A N/A A0A8J0PCL3 38834066
    866578 8rdu:I (2.3) BS02 ATP N/A N/A A0A8J0PCL3 38834066
    866579 8rdu:I (2.3) BS03 ATP N/A N/A A0A8J0PCL3 38834066
    866580 8rdu:J (2.3) BS01 peptide N/A N/A A0A8J0PCL3 38834066
    866581 8rdu:J (2.3) BS02 ATP N/A N/A A0A8J0PCL3 38834066
    866582 8rdu:J (2.3) BS03 ATP N/A N/A A0A8J0PCL3 38834066
    866583 8rdu:K (2.3) BS01 ATP N/A N/A A0A8J0PCL3 38834066
    866584 8rdu:K (2.3) BS02 ATP N/A N/A A0A8J0PCL3 38834066
    866585 8rdu:L (2.3) BS01 ATP N/A N/A A0A8J0PCL3 38834066
    866586 8rdu:L (2.3) BS02 ATP N/A N/A A0A8J0PCL3 38834066
    866587 8rdu:L (2.3) BS03 MG N/A N/A A0A8J0PCL3 38834066
    866588 8rdu:M (2.3) BS01 dna N/A N/A A0A8J0PCL3 38834066
    866589 8rdu:M (2.3) BS02 peptide N/A N/A A0A8J0PCL3 38834066
    866590 8rdu:M (2.3) BS03 ATP N/A N/A A0A8J0PCL3 38834066
    866591 8rdu:M (2.3) BS04 ATP N/A N/A A0A8J0PCL3 38834066
    866592 8rdu:N (2.3) BS01 dna N/A N/A A0A8J0PCL3 38834066
    866593 8rdu:N (2.3) BS02 peptide N/A N/A A0A8J0PCL3 38834066
    866594 8rdu:N (2.3) BS03 ATP N/A N/A A0A8J0PCL3 38834066
    866595 8rdu:N (2.3) BS04 ATP N/A N/A A0A8J0PCL3 38834066
    866596 8rdu:O (2.3) BS01 dna N/A N/A A0A8J0PCL3 38834066
    866597 8rdu:O (2.3) BS02 peptide N/A N/A A0A8J0PCL3 38834066
    866598 8rdu:O (2.3) BS03 ATP N/A N/A A0A8J0PCL3 38834066
    866599 8rdu:O (2.3) BS04 ATP N/A N/A A0A8J0PCL3 38834066
    866600 8rdu:P (2.3) BS01 dna N/A N/A A0A8J0PCL3 38834066

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).