SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    866801 8re5:A (1.7) BS02 YQX N/A N/A Q12797 N/A
    866802 8re5:A (1.7) BS03 YQX N/A N/A Q12797 N/A
    866803 8re5:A (1.7) BS04 MN N/A N/A Q12797 N/A
    866804 8re6:A (1.92) BS01 peptide N/A N/A Q12797 N/A
    866805 8re6:A (1.92) BS02 MN N/A N/A Q12797 N/A
    866806 8re6:A (1.92) BS03 AKG N/A N/A Q12797 N/A
    866807 8re7:A (1.95) BS01 peptide N/A N/A Q12797 N/A
    866808 8re7:A (1.95) BS02 AKG N/A N/A Q12797 N/A
    866809 8re7:A (1.95) BS03 MN N/A N/A Q12797 N/A
    866810 8re8:A (1.85) BS01 peptide N/A N/A Q12797 N/A
    866811 8re8:A (1.85) BS02 Q1Z N/A N/A Q12797 N/A
    866812 8re8:A (1.85) BS03 MN N/A N/A Q12797 N/A
    866813 8re9:A (1.84) BS01 peptide N/A N/A Q12797 N/A
    866814 8re9:A (1.84) BS02 AKG N/A N/A Q12797 N/A
    866815 8re9:A (1.84) BS03 MN N/A N/A Q12797 N/A
    866816 8rea:C (3.4) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    866817 8rea:C (3.4) BS02 rna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    866818 8rea:C (3.4) BS03 dna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    866819 8rea:D (3.4) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    866820 8rea:D (3.4) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    866821 8rea:D (3.4) BS03 MG 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    866822 8rea:D (3.4) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    866823 8rea:D (3.4) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    866824 8rea:M (3.4) BS01 dna ? GO:0001216 ... P06223 38170755
    866825 8rea:M (3.4) BS02 dna ? GO:0001216 ... P06223 38170755
    866826 8reb:C (3.4) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    866827 8reb:C (3.4) BS02 rna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    866828 8reb:C (3.4) BS03 dna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    866829 8reb:D (3.4) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    866830 8reb:D (3.4) BS02 rna 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    866831 8reb:D (3.4) BS03 dna 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    866832 8reb:D (3.4) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    866833 8reb:D (3.4) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    866834 8reb:M (3.4) BS01 dna ? GO:0001216 ... P06223 38170755
    866835 8reb:M (3.4) BS02 dna ? GO:0001216 ... P06223 38170755
    866836 8rec:C (3.5) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    866837 8rec:C (3.5) BS02 rna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    866838 8rec:C (3.5) BS03 dna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    866839 8rec:D (3.5) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    866840 8rec:D (3.5) BS02 rna 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    866841 8rec:D (3.5) BS03 dna 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    866842 8rec:D (3.5) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    866843 8rec:D (3.5) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    866844 8rec:M (3.5) BS01 dna ? GO:0001216 ... P06223 38170755
    866845 8rec:M (3.5) BS02 rna ? GO:0001216 ... P06223 38170755
    866846 8rec:M (3.5) BS03 dna ? GO:0001216 ... P06223 38170755
    866847 8red:C (3.9) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    866848 8red:C (3.9) BS02 rna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    866849 8red:C (3.9) BS03 dna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    866850 8red:D (3.9) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    866851 8red:D (3.9) BS02 rna 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    866852 8red:D (3.9) BS03 dna 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    866853 8red:D (3.9) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    866854 8red:M (3.9) BS01 dna ? GO:0001216 ... P06223 38170755
    866855 8red:M (3.9) BS02 dna ? GO:0001216 ... P06223 38170755
    866856 8ree:C (3.8) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    866857 8ree:C (3.8) BS02 rna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    866858 8ree:C (3.8) BS03 dna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    866859 8ree:D (3.8) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    866860 8ree:D (3.8) BS02 rna 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    866861 8ree:D (3.8) BS03 dna 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    866862 8ree:D (3.8) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    866863 8ree:D (3.8) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    866864 8ree:M (3.8) BS01 dna ? GO:0001216 ... P06223 38170755
    866865 8ree:M (3.8) BS02 dna ? GO:0001216 ... P06223 38170755
    866866 8ref:A (1.9) BS01 peptide ? GO:0006955 ... C5IYE8 38742159
    866867 8rej:A (3.16) BS01 WUE N/A N/A P37231 38865743
    866868 8ren:A (2.139) BS01 FDA N/A N/A Q9WYT0 N/A
    866869 8ren:A (2.139) BS02 FDA N/A N/A Q9WYT0 N/A
    866870 8ren:A (2.139) BS03 FDA N/A N/A Q9WYT0 N/A
    866871 8ren:B (2.139) BS01 FDA N/A N/A Q9WYT0 N/A
    866872 8ren:B (2.139) BS02 FDA N/A N/A Q9WYT0 N/A
    866873 8ren:B (2.139) BS03 FDA N/A N/A Q9WYT0 N/A
    866874 8ren:C (2.139) BS01 FDA N/A N/A Q9WYT0 N/A
    866875 8ren:C (2.139) BS02 FDA N/A N/A Q9WYT0 N/A
    866876 8ren:C (2.139) BS03 FDA N/A N/A Q9WYT0 N/A
    866877 8ren:D (2.139) BS01 FDA N/A N/A Q9WYT0 N/A
    866878 8ren:D (2.139) BS02 FDA N/A N/A Q9WYT0 N/A
    866879 8ren:D (2.139) BS03 FDA N/A N/A Q9WYT0 N/A
    866880 8reo:A (2.03) BS01 UMP N/A N/A Q9WYT0 N/A
    866881 8reo:A (2.03) BS02 FDA N/A N/A Q9WYT0 N/A
    866882 8reo:A (2.03) BS03 UMP N/A N/A Q9WYT0 N/A
    866883 8reo:A (2.03) BS04 FDA N/A N/A Q9WYT0 N/A
    866884 8reo:A (2.03) BS05 FDA N/A N/A Q9WYT0 N/A
    866885 8reo:B (2.03) BS01 UMP N/A N/A Q9WYT0 N/A
    866886 8reo:B (2.03) BS02 FDA N/A N/A Q9WYT0 N/A
    866887 8reo:B (2.03) BS03 UMP N/A N/A Q9WYT0 N/A
    866888 8reo:B (2.03) BS04 FDA N/A N/A Q9WYT0 N/A
    866889 8reo:B (2.03) BS05 FDA N/A N/A Q9WYT0 N/A
    866890 8reo:C (2.03) BS01 FDA N/A N/A Q9WYT0 N/A
    866891 8reo:C (2.03) BS02 UMP N/A N/A Q9WYT0 N/A
    866892 8reo:C (2.03) BS03 FDA N/A N/A Q9WYT0 N/A
    866893 8reo:C (2.03) BS04 UMP N/A N/A Q9WYT0 N/A
    866894 8reo:C (2.03) BS05 FDA N/A N/A Q9WYT0 N/A
    866895 8reo:D (2.03) BS01 FDA N/A N/A Q9WYT0 N/A
    866896 8reo:D (2.03) BS02 UMP N/A N/A Q9WYT0 N/A
    866897 8reo:D (2.03) BS03 FDA N/A N/A Q9WYT0 N/A
    866898 8reo:D (2.03) BS04 UMP N/A N/A Q9WYT0 N/A
    866899 8reo:D (2.03) BS05 FDA N/A N/A Q9WYT0 N/A
    866900 8rep:A (2.201) BS01 FAD N/A N/A Q9WYT0 N/A
    866901 8rep:A (2.201) BS02 FAD N/A N/A Q9WYT0 N/A
    866902 8rep:A (2.201) BS03 FAD N/A N/A Q9WYT0 N/A
    866903 8rep:B (2.201) BS01 FAD N/A N/A Q9WYT0 N/A
    866904 8rep:B (2.201) BS02 FAD N/A N/A Q9WYT0 N/A
    866905 8rep:B (2.201) BS03 FAD N/A N/A Q9WYT0 N/A
    866906 8rep:C (2.201) BS01 FAD N/A N/A Q9WYT0 N/A
    866907 8rep:C (2.201) BS02 FAD N/A N/A Q9WYT0 N/A
    866908 8rep:C (2.201) BS03 FAD N/A N/A Q9WYT0 N/A
    866909 8rep:D (2.201) BS01 FAD N/A N/A Q9WYT0 N/A
    866910 8rep:D (2.201) BS02 FAD N/A N/A Q9WYT0 N/A
    866911 8rep:D (2.201) BS03 FAD N/A N/A Q9WYT0 N/A
    866912 8req:A (1.94) BS01 FDA N/A N/A Q9WYT0 N/A
    866913 8req:A (1.94) BS02 FDA N/A N/A Q9WYT0 N/A
    866914 8req:A (1.94) BS03 FDA N/A N/A Q9WYT0 N/A
    866915 8req:B (1.94) BS01 FDA N/A N/A Q9WYT0 N/A
    866916 8req:B (1.94) BS02 FDA N/A N/A Q9WYT0 N/A
    866917 8req:B (1.94) BS03 FDA N/A N/A Q9WYT0 N/A
    866918 8req:C (1.94) BS01 FDA N/A N/A Q9WYT0 N/A
    866919 8req:C (1.94) BS02 FDA N/A N/A Q9WYT0 N/A
    866920 8req:C (1.94) BS03 FDA N/A N/A Q9WYT0 N/A
    866921 8req:D (1.94) BS01 FDA N/A N/A Q9WYT0 N/A
    866922 8req:D (1.94) BS02 FDA N/A N/A Q9WYT0 N/A
    866923 8req:D (1.94) BS03 FDA N/A N/A Q9WYT0 N/A
    866924 8rev:A (3.1) BS01 dna 3.6.4.12 GO:0003676 ... G0RZH0 38806694
    866925 8rev:A (3.1) BS02 dna 3.6.4.12 GO:0003676 ... G0RZH0 38806694
    866926 8rev:A (3.1) BS03 SF4 3.6.4.12 GO:0003676 ... G0RZH0 38806694
    866927 8rev:A (3.1) BS04 ADP 3.6.4.12 GO:0003676 ... G0RZH0 38806694
    866928 8rey:A (2.61) BS01 GAL N/A N/A A0A1N5V6R6 N/A
    866929 8rey:B (2.61) BS01 GAL N/A N/A A0A1N5V6R6 N/A
    866930 8rey:C (2.61) BS01 GAL N/A N/A A0A1N5V6R6 N/A
    866931 8rey:D (2.61) BS01 GAL N/A N/A A0A1N5V6R6 N/A
    866932 8rey:E (2.61) BS01 GAL N/A N/A A0A1N5V6R6 N/A
    866933 8rey:F (2.61) BS01 GAL N/A N/A A0A1N5V6R6 N/A
    866934 8rey:G (2.61) BS01 GAL N/A N/A A0A1N5V6R6 N/A
    866935 8rey:H (2.61) BS01 GAL N/A N/A A0A1N5V6R6 N/A
    866936 8rey:I (2.61) BS01 GAL N/A N/A A0A1N5V6R6 N/A
    866937 8rey:J (2.61) BS01 GAL N/A N/A A0A1N5V6R6 N/A
    866938 8rey:K (2.61) BS01 GAL N/A N/A A0A1N5V6R6 N/A
    866939 8rey:L (2.61) BS01 GAL N/A N/A A0A1N5V6R6 N/A
    866940 8rey:M (2.61) BS01 GAL N/A N/A A0A1N5V6R6 N/A
    866941 8rey:N (2.61) BS01 GAL N/A N/A A0A1N5V6R6 N/A
    866942 8rey:O (2.61) BS01 GAL N/A N/A A0A1N5V6R6 N/A
    866943 8rey:P (2.61) BS01 GAL N/A N/A A0A1N5V6R6 N/A
    866944 8rey:Q (2.61) BS01 GAL N/A N/A A0A1N5V6R6 N/A
    866945 8rey:R (2.61) BS01 GAL N/A N/A A0A1N5V6R6 N/A
    866946 8rey:S (2.61) BS01 GAL N/A N/A A0A1N5V6R6 N/A
    866947 8rey:T (2.61) BS01 GAL N/A N/A A0A1N5V6R6 N/A
    866948 8rey:U (2.61) BS01 GAL N/A N/A A0A1N5V6R6 N/A
    866949 8rey:V (2.61) BS01 GAL N/A N/A A0A1N5V6R6 N/A
    866950 8rey:W (2.61) BS01 GAL N/A N/A A0A1N5V6R6 N/A
    866951 8rey:X (2.61) BS01 GAL N/A N/A A0A1N5V6R6 N/A
    866952 8rey:Y (2.61) BS01 GAL N/A N/A A0A1N5V6R6 N/A
    866953 8rey:Z (2.61) BS01 GAL N/A N/A A0A1N5V6R6 N/A
    866954 8rey:a (2.61) BS01 GAL N/A N/A A0A1N5V6R6 N/A
    866955 8rey:b (2.61) BS01 GAL N/A N/A A0A1N5V6R6 N/A
    866956 8rey:c (2.61) BS01 GAL N/A N/A A0A1N5V6R6 N/A
    866957 8rey:d (2.61) BS01 GAL N/A N/A A0A1N5V6R6 N/A
    866958 8rey:e (2.61) BS01 GAL N/A N/A A0A1N5V6R6 N/A
    866959 8rey:f (2.61) BS01 GAL N/A N/A A0A1N5V6R6 N/A
    866960 8rey:g (2.61) BS01 GAL N/A N/A A0A1N5V6R6 N/A
    866961 8rey:h (2.61) BS01 GAL N/A N/A A0A1N5V6R6 N/A
    866962 8rey:i (2.61) BS01 GAL N/A N/A A0A1N5V6R6 N/A
    866963 8rey:j (2.61) BS01 GAL N/A N/A A0A1N5V6R6 N/A
    866964 8rf0:A (3.4) BS01 BGC N/A GO:0003824 ... N/A 38418509
    866965 8rf0:A (3.4) BS02 BGC N/A GO:0003824 ... N/A 38418509
    866966 8rf0:A (3.4) BS03 BGC N/A GO:0003824 ... N/A 38418509
    866967 8rf0:A (3.4) BS04 BGC N/A GO:0003824 ... N/A 38418509
    866968 8rf0:A (3.4) BS05 UPG N/A GO:0003824 ... N/A 38418509
    866969 8rf1:A (4.3) BS01 RHQ N/A N/A O06967 N/A
    866970 8rf1:B (4.3) BS01 RHQ N/A N/A O06967 N/A
    866971 8rf1:B (4.3) BS02 RHQ N/A N/A O06967 N/A
    866972 8rf2:A (1.44) BS01 A1H0G N/A N/A P0DTD1 38841886
    866973 8rf3:A (1.23) BS01 A1H0L N/A N/A P0DTD1 38841886
    866974 8rf4:A (1.11) BS01 EQT N/A N/A P0DTD1 38841886
    866975 8rf5:A (1.1) BS01 FBB N/A N/A P0DTD1 38841886
    866976 8rf6:A (1.08) BS01 A1H0K N/A N/A P0DTD1 38841886
    866977 8rf8:A (1.12) BS01 A1H0M N/A N/A P0DTD1 38841886
    866978 8rfa:A (1.76) BS01 MN N/A GO:0000050 ... P78540 39572889
    866979 8rfa:A (1.76) BS02 MN N/A GO:0000050 ... P78540 39572889
    866980 8rfa:A (1.76) BS03 A1HZ9 N/A GO:0000050 ... P78540 39572889
    866981 8rfa:B (1.76) BS01 MN N/A GO:0000050 ... P78540 39572889
    866982 8rfa:B (1.76) BS02 MN N/A GO:0000050 ... P78540 39572889
    866983 8rfa:C (1.76) BS01 MN N/A GO:0000050 ... P78540 39572889
    866984 8rfa:C (1.76) BS02 MN N/A GO:0000050 ... P78540 39572889
    866985 8rfc:A (1.1) BS01 A1H0N N/A N/A P0DTD1 38841886
    866986 8rfd:A (1.13) BS01 A1H0J N/A N/A P0DTD1 38841886
    866987 8rfe:A (3.8) BS01 BGC N/A GO:0003824 ... N/A 38418509
    866988 8rfe:A (3.8) BS02 BGC N/A GO:0003824 ... N/A 38418509
    866989 8rfe:A (3.8) BS03 BGC N/A GO:0003824 ... N/A 38418509
    866990 8rfe:A (3.8) BS04 BGC N/A GO:0003824 ... N/A 38418509
    866991 8rfe:A (3.8) BS05 UPG N/A GO:0003824 ... N/A 38418509
    866992 8rfe:A (3.8) BS06 UPG N/A GO:0003824 ... N/A 38418509
    866993 8rff:A (1.31) BS01 ABV N/A N/A P0DTD1 38841886
    866994 8rfg:A (3.35) BS01 BGC N/A GO:0003824 ... N/A 38418509
    866995 8rfg:A (3.35) BS02 BGC N/A GO:0003824 ... N/A 38418509
    866996 8rfg:A (3.35) BS03 BGC N/A GO:0003824 ... N/A 38418509
    866997 8rfg:A (3.35) BS04 BGC N/A GO:0003824 ... N/A 38418509
    866998 8rfg:A (3.35) BS05 BGC N/A GO:0003824 ... N/A 38418509
    866999 8rfg:A (3.35) BS06 BGC N/A GO:0003824 ... N/A 38418509
    867000 8rfg:A (3.35) BS07 BGC N/A GO:0003824 ... N/A 38418509

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).