SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    867001 8rfg:A (3.35) BS08 BGC N/A GO:0003824 ... N/A 38418509
    867002 8rfg:A (3.35) BS09 BGC N/A GO:0003824 ... N/A 38418509
    867003 8rfg:A (3.35) BS10 BGC N/A GO:0003824 ... N/A 38418509
    867004 8rfh:A (3.9) BS01 ADP ? GO:0006952 ... A0A0S3ANR1 39423240
    867005 8rfh:B (3.9) BS01 ADP ? GO:0006952 ... A0A0S3ANR1 39423240
    867006 8rfj:A (3.18) BS01 rna N/A N/A A0A379PIR9 39468082
    867007 8rfj:A (3.18) BS02 dna N/A N/A A0A379PIR9 39468082
    867008 8rfj:A (3.18) BS03 dna N/A N/A A0A379PIR9 39468082
    867009 8rfj:B (3.18) BS01 rna N/A N/A A0A379PIR9 39468082
    867010 8rfj:B (3.18) BS02 dna N/A N/A A0A379PIR9 39468082
    867011 8rfj:C (3.18) BS01 rna N/A N/A A0A379PIR9 39468082
    867012 8rfj:C (3.18) BS02 dna N/A N/A A0A379PIR9 39468082
    867013 8rfj:D (3.18) BS01 rna N/A N/A A0A379PIR9 39468082
    867014 8rfj:D (3.18) BS02 dna N/A N/A A0A379PIR9 39468082
    867015 8rfj:E (3.18) BS01 rna N/A N/A A0A379PIR9 39468082
    867016 8rfj:E (3.18) BS02 dna N/A N/A A0A379PIR9 39468082
    867017 8rfj:F (3.18) BS01 rna N/A N/A A0A379PL53 39468082
    867018 8rfj:F (3.18) BS02 dna N/A N/A A0A379PL53 39468082
    867019 8rfj:F (3.18) BS03 dna N/A N/A A0A379PL53 39468082
    867020 8rfj:G (3.18) BS01 dna N/A N/A A0A379PIR4 39468082
    867021 8rfj:G (3.18) BS02 dna N/A N/A A0A379PIR4 39468082
    867022 8rfj:G (3.18) BS03 ZN N/A N/A A0A379PIR4 39468082
    867023 8rfj:K (3.18) BS01 dna N/A GO:0004386 ... A0A379PL92 39468082
    867024 8rfj:M (3.18) BS01 rna N/A N/A A0A379PNK2 39468082
    867025 8rfj:M (3.18) BS02 dna N/A N/A A0A379PNK2 39468082
    867026 8rfk:A (1.56) BS01 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    867027 8rfk:A (1.56) BS02 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    867028 8rfk:A (1.56) BS03 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    867029 8rfk:A (1.56) BS04 A1H0D 1.1.5.2 GO:0008876 ... P13650 38687614
    867030 8rfk:B (1.56) BS01 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    867031 8rfk:B (1.56) BS02 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    867032 8rfk:B (1.56) BS03 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    867033 8rfk:B (1.56) BS04 A1H0D 1.1.5.2 GO:0008876 ... P13650 38687614
    867034 8rfl:A (1.16) BS01 FRU N/A GO:0005507 ... Q89EJ6 39002715
    867035 8rfl:A (1.16) BS02 CU N/A GO:0005507 ... Q89EJ6 39002715
    867036 8rfl:A (1.16) BS03 CU N/A GO:0005507 ... Q89EJ6 39002715
    867037 8rfl:A (1.16) BS04 NO2 N/A GO:0005507 ... Q89EJ6 39002715
    867038 8rfl:A (1.16) BS05 NO2 N/A GO:0005507 ... Q89EJ6 39002715
    867039 8rfm:A (2.7) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    867040 8rfm:A (2.7) BS02 NAD 1.6.5.2 GO:0000209 ... P15559 38501509
    867041 8rfm:B (2.7) BS01 NAD 1.6.5.2 GO:0000209 ... P15559 38501509
    867042 8rfm:B (2.7) BS02 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    867043 8rfm:C (2.7) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    867044 8rfm:C (2.7) BS02 NAD 1.6.5.2 GO:0000209 ... P15559 38501509
    867045 8rfm:C (2.7) BS03 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    867046 8rfm:D (2.7) BS01 NAD 1.6.5.2 GO:0000209 ... P15559 38501509
    867047 8rfm:D (2.7) BS02 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    867048 8rfn:A (2.5) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    867049 8rfn:B (2.5) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    867050 8rfn:C (2.5) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    867051 8rfn:C (2.5) BS02 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    867052 8rfn:D (2.5) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    867053 8rfo:A (1.19) BS01 FRU N/A GO:0005507 ... Q89EJ6 39002715
    867054 8rfo:A (1.19) BS02 CU N/A GO:0005507 ... Q89EJ6 39002715
    867055 8rfo:A (1.19) BS03 CU N/A GO:0005507 ... Q89EJ6 39002715
    867056 8rfo:A (1.19) BS04 NO2 N/A GO:0005507 ... Q89EJ6 39002715
    867057 8rfo:A (1.19) BS05 NO2 N/A GO:0005507 ... Q89EJ6 39002715
    867058 8rfp:A (1.23) BS01 FRU N/A GO:0005507 ... Q89EJ6 39002715
    867059 8rfp:A (1.23) BS02 CU N/A GO:0005507 ... Q89EJ6 39002715
    867060 8rfp:A (1.23) BS03 CU N/A GO:0005507 ... Q89EJ6 39002715
    867061 8rfp:A (1.23) BS04 NO2 N/A GO:0005507 ... Q89EJ6 39002715
    867062 8rfp:A (1.23) BS05 NO2 N/A GO:0005507 ... Q89EJ6 39002715
    867063 8rfp:A (1.23) BS06 NO N/A GO:0005507 ... Q89EJ6 39002715
    867064 8rfq:A (1.32) BS01 FRU N/A GO:0005507 ... Q89EJ6 39002715
    867065 8rfq:A (1.32) BS02 CU N/A GO:0005507 ... Q89EJ6 39002715
    867066 8rfq:A (1.32) BS03 CU N/A GO:0005507 ... Q89EJ6 39002715
    867067 8rfq:A (1.32) BS04 NO2 N/A GO:0005507 ... Q89EJ6 39002715
    867068 8rfq:A (1.32) BS05 NO N/A GO:0005507 ... Q89EJ6 39002715
    867069 8rfr:A (1.4) BS01 FRU N/A GO:0005507 ... Q89EJ6 39002715
    867070 8rfr:A (1.4) BS02 CU N/A GO:0005507 ... Q89EJ6 39002715
    867071 8rfr:A (1.4) BS03 CU N/A GO:0005507 ... Q89EJ6 39002715
    867072 8rfr:A (1.4) BS04 NO2 N/A GO:0005507 ... Q89EJ6 39002715
    867073 8rfr:A (1.4) BS05 NO N/A GO:0005507 ... Q89EJ6 39002715
    867074 8rfs:A (1.54) BS01 FRU N/A GO:0005507 ... Q89EJ6 39002715
    867075 8rfs:A (1.54) BS02 CU N/A GO:0005507 ... Q89EJ6 39002715
    867076 8rfs:A (1.54) BS03 CU N/A GO:0005507 ... Q89EJ6 39002715
    867077 8rft:A (1.7) BS01 FRU N/A GO:0005507 ... Q89EJ6 39002715
    867078 8rft:A (1.7) BS02 CU N/A GO:0005507 ... Q89EJ6 39002715
    867079 8rft:A (1.7) BS03 CU N/A GO:0005507 ... Q89EJ6 39002715
    867080 8rfu:A (2.18) BS01 FRU N/A GO:0005507 ... Q89EJ6 39002715
    867081 8rfu:A (2.18) BS02 CU N/A GO:0005507 ... Q89EJ6 39002715
    867082 8rfu:A (2.18) BS03 CU N/A GO:0005507 ... Q89EJ6 39002715
    867083 8rfu:A (2.18) BS04 NO2 N/A GO:0005507 ... Q89EJ6 39002715
    867084 8rfv:A (1.31) BS01 CU N/A GO:0005507 ... H0SLX7 39002715
    867085 8rfv:A (1.31) BS02 CU N/A GO:0005507 ... H0SLX7 39002715
    867086 8rfw:A (1.33) BS01 CU N/A GO:0005507 ... H0SLX7 39002715
    867087 8rfw:A (1.33) BS02 CU N/A GO:0005507 ... H0SLX7 39002715
    867088 8rfx:A (1.4) BS01 CU N/A GO:0005507 ... H0SLX7 39002715
    867089 8rfx:A (1.4) BS02 CU N/A GO:0005507 ... H0SLX7 39002715
    867090 8rfy:A (1.79) BS01 CU N/A GO:0005507 ... H0SLX7 39002715
    867091 8rfy:A (1.79) BS02 CU N/A GO:0005507 ... H0SLX7 39002715
    867092 8rg0:8 (3.4) BS01 rna N/A GO:0001732 ... O15372 39289545
    867093 8rg0:H (3.4) BS01 rna N/A GO:0000028 ... P42677 39289545
    867094 8rg0:I (3.4) BS01 rna N/A GO:0002181 ... P62277 39289545
    867095 8rg0:M (3.4) BS01 rna N/A GO:0002181 ... P08708 39289545
    867096 8rg0:N (3.4) BS01 rna N/A GO:0000028 ... P08865 39289545
    867097 8rg0:O (3.4) BS01 rna N/A GO:0002181 ... P61247 39289545
    867098 8rg0:P (3.4) BS01 rna N/A GO:0000028 ... P62263 39289545
    867099 8rg0:Q (3.4) BS01 rna N/A GO:0002181 ... P62854 39289545
    867100 8rg0:Q (3.4) BS02 rna N/A GO:0002181 ... P62854 39289545
    867101 8rg0:Q (3.4) BS03 ZN N/A GO:0002181 ... P62854 39289545
    867102 8rg0:n (3.4) BS01 rna N/A GO:0000028 ... P62857 39289545
    867103 8rg0:u (3.4) BS01 rna N/A GO:0001732 ... Q14152 39289545
    867104 8rg0:x (3.4) BS01 rna N/A GO:0001732 ... O15371 39289545
    867105 8rg0:y (3.4) BS01 rna N/A GO:0001732 ... Q99613 39289545
    867106 8rg0:y (3.4) BS02 rna N/A GO:0001732 ... Q99613 39289545
    867107 8rg1:A (1.19) BS01 A1H0D 1.1.5.2 GO:0008876 ... P13650 38687614
    867108 8rg1:A (1.19) BS02 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    867109 8rg1:A (1.19) BS03 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    867110 8rg1:A (1.19) BS04 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    867111 8rg1:B (1.19) BS01 A1H0D 1.1.5.2 GO:0008876 ... P13650 38687614
    867112 8rg1:B (1.19) BS02 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    867113 8rg1:B (1.19) BS03 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    867114 8rg1:B (1.19) BS04 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    867115 8rg6:A (1.62) BS01 MN N/A GO:0000050 ... P78540 39572889
    867116 8rg6:A (1.62) BS02 MN N/A GO:0000050 ... P78540 39572889
    867117 8rg6:A (1.62) BS03 A1H0B N/A GO:0000050 ... P78540 39572889
    867118 8rg6:B (1.62) BS01 MN N/A GO:0000050 ... P78540 39572889
    867119 8rg6:B (1.62) BS02 MN N/A GO:0000050 ... P78540 39572889
    867120 8rg6:B (1.62) BS03 A1H0B N/A GO:0000050 ... P78540 39572889
    867121 8rg6:C (1.62) BS01 MN N/A GO:0000050 ... P78540 39572889
    867122 8rg6:C (1.62) BS02 MN N/A GO:0000050 ... P78540 39572889
    867123 8rg6:C (1.62) BS03 A1H0B N/A GO:0000050 ... P78540 39572889
    867124 8rg7:A (3.9) BS01 RHQ N/A N/A O06967 N/A
    867125 8rg7:A (3.9) BS02 RHQ N/A N/A O06967 N/A
    867126 8rg7:B (3.9) BS01 RHQ N/A N/A O06967 N/A
    867127 8rg7:B (3.9) BS02 RHQ N/A N/A O06967 N/A
    867128 8rg8:A (1.21) BS01 GLC N/A GO:0005507 ... H0SLX7 39002715
    867129 8rg8:A (1.21) BS02 GLC N/A GO:0005507 ... H0SLX7 39002715
    867130 8rg8:A (1.21) BS03 GLC N/A GO:0005507 ... H0SLX7 39002715
    867131 8rg8:A (1.21) BS04 FRU N/A GO:0005507 ... H0SLX7 39002715
    867132 8rg8:A (1.21) BS05 CU N/A GO:0005507 ... H0SLX7 39002715
    867133 8rg8:A (1.21) BS06 CU N/A GO:0005507 ... H0SLX7 39002715
    867134 8rg8:A (1.21) BS07 NO2 N/A GO:0005507 ... H0SLX7 39002715
    867135 8rg8:A (1.21) BS08 NO2 N/A GO:0005507 ... H0SLX7 39002715
    867136 8rg8:A (1.21) BS09 NO2 N/A GO:0005507 ... H0SLX7 39002715
    867137 8rg8:A (1.21) BS10 NO N/A GO:0005507 ... H0SLX7 39002715
    867138 8rg9:A (1.25) BS01 GLC N/A GO:0005507 ... H0SLX7 39002715
    867139 8rg9:A (1.25) BS02 GLC N/A GO:0005507 ... H0SLX7 39002715
    867140 8rg9:A (1.25) BS03 GLC N/A GO:0005507 ... H0SLX7 39002715
    867141 8rg9:A (1.25) BS04 FRU N/A GO:0005507 ... H0SLX7 39002715
    867142 8rg9:A (1.25) BS05 CU N/A GO:0005507 ... H0SLX7 39002715
    867143 8rg9:A (1.25) BS06 CU N/A GO:0005507 ... H0SLX7 39002715
    867144 8rg9:A (1.25) BS07 NO2 N/A GO:0005507 ... H0SLX7 39002715
    867145 8rg9:A (1.25) BS08 NO2 N/A GO:0005507 ... H0SLX7 39002715
    867146 8rg9:A (1.25) BS09 NO2 N/A GO:0005507 ... H0SLX7 39002715
    867147 8rg9:A (1.25) BS10 NO N/A GO:0005507 ... H0SLX7 39002715
    867148 8rgb:A (1.39) BS01 GLC N/A GO:0005507 ... H0SLX7 39002715
    867149 8rgb:A (1.39) BS02 GLC N/A GO:0005507 ... H0SLX7 39002715
    867150 8rgb:A (1.39) BS03 GLC N/A GO:0005507 ... H0SLX7 39002715
    867151 8rgb:A (1.39) BS04 FRU N/A GO:0005507 ... H0SLX7 39002715
    867152 8rgb:A (1.39) BS05 CU N/A GO:0005507 ... H0SLX7 39002715
    867153 8rgb:A (1.39) BS06 CU N/A GO:0005507 ... H0SLX7 39002715
    867154 8rgb:A (1.39) BS07 NO2 N/A GO:0005507 ... H0SLX7 39002715
    867155 8rgb:A (1.39) BS08 NO2 N/A GO:0005507 ... H0SLX7 39002715
    867156 8rgb:A (1.39) BS09 NO N/A GO:0005507 ... H0SLX7 39002715
    867157 8rgb:A (1.39) BS10 NO N/A GO:0005507 ... H0SLX7 39002715
    867158 8rgc:A (1.55) BS01 GLC N/A GO:0005507 ... H0SLX7 39002715
    867159 8rgc:A (1.55) BS02 FRU N/A GO:0005507 ... H0SLX7 39002715
    867160 8rgc:A (1.55) BS03 GLC N/A GO:0005507 ... H0SLX7 39002715
    867161 8rgc:A (1.55) BS04 GLC N/A GO:0005507 ... H0SLX7 39002715
    867162 8rgc:A (1.55) BS05 FRU N/A GO:0005507 ... H0SLX7 39002715
    867163 8rgc:A (1.55) BS06 CU N/A GO:0005507 ... H0SLX7 39002715
    867164 8rgc:A (1.55) BS07 CU N/A GO:0005507 ... H0SLX7 39002715
    867165 8rgc:A (1.55) BS08 NO2 N/A GO:0005507 ... H0SLX7 39002715
    867166 8rgc:A (1.55) BS09 NO2 N/A GO:0005507 ... H0SLX7 39002715
    867167 8rgc:A (1.55) BS10 NO N/A GO:0005507 ... H0SLX7 39002715
    867168 8rgd:A (1.71) BS01 GLC N/A GO:0005507 ... H0SLX7 39002715
    867169 8rgd:A (1.71) BS02 GLC N/A GO:0005507 ... H0SLX7 39002715
    867170 8rgd:A (1.71) BS03 GLC N/A GO:0005507 ... H0SLX7 39002715
    867171 8rgd:A (1.71) BS04 FRU N/A GO:0005507 ... H0SLX7 39002715
    867172 8rgd:A (1.71) BS05 CU N/A GO:0005507 ... H0SLX7 39002715
    867173 8rgd:A (1.71) BS06 CU N/A GO:0005507 ... H0SLX7 39002715
    867174 8rgd:A (1.71) BS07 NO2 N/A GO:0005507 ... H0SLX7 39002715
    867175 8rgd:A (1.71) BS08 NO2 N/A GO:0005507 ... H0SLX7 39002715
    867176 8rgd:A (1.71) BS09 NO N/A GO:0005507 ... H0SLX7 39002715
    867177 8rgd:A (1.71) BS10 NO N/A GO:0005507 ... H0SLX7 39002715
    867178 8rgf:A (1.86) BS01 MN N/A GO:0000050 ... P78540 39572889
    867179 8rgf:A (1.86) BS02 MN N/A GO:0000050 ... P78540 39572889
    867180 8rgf:A (1.86) BS03 A1H0A N/A GO:0000050 ... P78540 39572889
    867181 8rgf:B (1.86) BS01 MN N/A GO:0000050 ... P78540 39572889
    867182 8rgf:B (1.86) BS02 MN N/A GO:0000050 ... P78540 39572889
    867183 8rgf:C (1.86) BS01 MN N/A GO:0000050 ... P78540 39572889
    867184 8rgf:C (1.86) BS02 MN N/A GO:0000050 ... P78540 39572889
    867185 8rgf:C (1.86) BS03 A1H0A N/A GO:0000050 ... P78540 39572889
    867186 8rgh:A (3.9) BS01 peptide 2.1.1.63 GO:0001822 ... P16455
    Q8NCM8
    38454149
    867187 8rgh:C (3.9) BS01 peptide ? GO:0000242 ... Q8WVS4 38454149
    867188 8rgj:A (2.359) BS01 ACP N/A N/A B4FFH8 N/A
    867189 8rgj:B (2.359) BS01 ACP N/A N/A B4FFH8 N/A
    867190 8rgk:A (1.9) BS01 MYR N/A GO:0005615 ... P02768 38782206
    867191 8rgk:A (1.9) BS02 MYR N/A GO:0005615 ... P02768 38782206
    867192 8rgk:A (1.9) BS03 MYR N/A GO:0005615 ... P02768 38782206
    867193 8rgk:A (1.9) BS04 MYR N/A GO:0005615 ... P02768 38782206
    867194 8rgk:A (1.9) BS05 MYR N/A GO:0005615 ... P02768 38782206
    867195 8rgk:A (1.9) BS06 MYR N/A GO:0005615 ... P02768 38782206
    867196 8rgk:A (1.9) BS07 MYR N/A GO:0005615 ... P02768 38782206
    867197 8rgk:B (1.9) BS01 GOQ N/A GO:0005615 ... P02768 38782206
    867198 8rgk:B (1.9) BS02 MYR N/A GO:0005615 ... P02768 38782206
    867199 8rgk:B (1.9) BS03 MYR N/A GO:0005615 ... P02768 38782206
    867200 8rgk:B (1.9) BS04 MYR N/A GO:0005615 ... P02768 38782206

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).