SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    867801 8rhx:D (1.48) BS01 NDP N/A GO:0000166 ... O76290 38953453
    867802 8rhx:D (1.48) BS02 A1H0T N/A GO:0000166 ... O76290 38953453
    867803 8rhy:A (1.86) BS01 NDP N/A GO:0000166 ... O76290 38953453
    867804 8rhy:A (1.86) BS02 A1H0V N/A GO:0000166 ... O76290 38953453
    867805 8rhy:B (1.86) BS01 NDP N/A GO:0000166 ... O76290 38953453
    867806 8rhy:B (1.86) BS02 A1H0V N/A GO:0000166 ... O76290 38953453
    867807 8rhy:C (1.86) BS01 NDP N/A GO:0000166 ... O76290 38953453
    867808 8rhy:C (1.86) BS02 A1H0V N/A GO:0000166 ... O76290 38953453
    867809 8rhy:D (1.86) BS01 NDP N/A GO:0000166 ... O76290 38953453
    867810 8rhy:D (1.86) BS02 A1H0V N/A GO:0000166 ... O76290 38953453
    867811 8rhz:C (3.37) BS01 ZN 2.3.2.27
    2.3.2.32
    GO:0000165 ... P62877 38605244
    867812 8rhz:C (3.37) BS02 ZN 2.3.2.27
    2.3.2.32
    GO:0000165 ... P62877 38605244
    867813 8rhz:C (3.37) BS03 ZN 2.3.2.27
    2.3.2.32
    GO:0000165 ... P62877 38605244
    867814 8rhz:D (3.37) BS01 ZN 2.3.2.27
    2.3.2.32
    GO:0000165 ... P62877 38605244
    867815 8rhz:D (3.37) BS02 ZN 2.3.2.27
    2.3.2.32
    GO:0000165 ... P62877 38605244
    867816 8rhz:D (3.37) BS03 ZN 2.3.2.27
    2.3.2.32
    GO:0000165 ... P62877 38605244
    867817 8ri0:A (1.95) BS01 SAM 2.1.1.228 N/A E4THH1 N/A
    867818 8ri0:B (1.95) BS01 SAM 2.1.1.228 N/A E4THH1 N/A
    867819 8ri1:A (3.6) BS01 ATP N/A N/A O06967 N/A
    867820 8ri1:A (3.6) BS02 ATP N/A N/A O06967 N/A
    867821 8ri1:B (3.6) BS01 ATP N/A N/A O06967 N/A
    867822 8ri1:B (3.6) BS02 ATP N/A N/A O06967 N/A
    867823 8ri2:A (2.8) BS01 A1H02 3.6.4.- N/A Q96P20 38175811
    867824 8ri2:A (2.8) BS02 ADP 3.6.4.- N/A Q96P20 38175811
    867825 8ri4:A (1.7) BS01 4MA N/A N/A P0DTD1 N/A
    867826 8ri6:A (2.06) BS01 MG N/A N/A P00722 N/A
    867827 8ri6:A (2.06) BS02 MG N/A N/A P00722 N/A
    867828 8ri6:B (2.06) BS01 MG N/A N/A P00722 N/A
    867829 8ri6:B (2.06) BS02 MG N/A N/A P00722 N/A
    867830 8ri6:C (2.06) BS01 MG N/A N/A P00722 N/A
    867831 8ri6:C (2.06) BS02 MG N/A N/A P00722 N/A
    867832 8ri6:D (2.06) BS01 MG N/A N/A P00722 N/A
    867833 8ri6:D (2.06) BS02 MG N/A N/A P00722 N/A
    867834 8ri7:A (1.93) BS01 A1H05 N/A N/A N/A N/A
    867835 8ri7:A (1.93) BS02 MG N/A N/A N/A N/A
    867836 8ri7:A (1.93) BS03 MG N/A N/A N/A N/A
    867837 8ri7:B (1.93) BS01 A1H05 N/A N/A N/A N/A
    867838 8ri7:B (1.93) BS02 MG N/A N/A N/A N/A
    867839 8ri7:B (1.93) BS03 MG N/A N/A N/A N/A
    867840 8ri7:C (1.93) BS01 A1H05 N/A N/A N/A N/A
    867841 8ri7:C (1.93) BS02 MG N/A N/A N/A N/A
    867842 8ri7:C (1.93) BS03 MG N/A N/A N/A N/A
    867843 8ri7:D (1.93) BS01 A1H05 N/A N/A N/A N/A
    867844 8ri7:D (1.93) BS02 MG N/A N/A N/A N/A
    867845 8ri7:D (1.93) BS03 MG N/A N/A N/A N/A
    867846 8ri8:A (1.42) BS01 A1H05 N/A N/A N/A N/A
    867847 8ri8:A (1.42) BS02 MG N/A N/A N/A N/A
    867848 8ri8:A (1.42) BS03 MG N/A N/A N/A N/A
    867849 8ri8:B (1.42) BS01 A1H05 N/A N/A N/A N/A
    867850 8ri8:B (1.42) BS02 MG N/A N/A N/A N/A
    867851 8ri8:B (1.42) BS03 MG N/A N/A N/A N/A
    867852 8ri8:C (1.42) BS01 A1H05 N/A N/A N/A N/A
    867853 8ri8:C (1.42) BS02 MG N/A N/A N/A N/A
    867854 8ri8:C (1.42) BS03 MG N/A N/A N/A N/A
    867855 8ri8:D (1.42) BS01 A1H05 N/A N/A N/A N/A
    867856 8ri8:D (1.42) BS02 MG N/A N/A N/A N/A
    867857 8ri8:D (1.42) BS03 MG N/A N/A N/A N/A
    867858 8rib:A (1.126) BS01 OJN N/A N/A Q8IEW2 N/A
    867859 8rib:B (1.126) BS01 OJN N/A N/A Q8IEW2 N/A
    867860 8rif:2 (2.79) BS01 ATP N/A N/A P29469 N/A
    867861 8rif:2 (2.79) BS02 ZN N/A N/A P29469 N/A
    867862 8rif:2 (2.79) BS03 ADP N/A N/A P29469 N/A
    867863 8rif:3 (2.79) BS01 ADP N/A N/A P24279 N/A
    867864 8rif:4 (2.79) BS01 ZN N/A N/A P30665 N/A
    867865 8rif:5 (2.79) BS01 ADP N/A N/A P29496 N/A
    867866 8rif:5 (2.79) BS02 ADP N/A N/A P29496 N/A
    867867 8rif:5 (2.79) BS03 ZN N/A N/A P29496 N/A
    867868 8rif:6 (2.79) BS01 dna N/A N/A P53091 N/A
    867869 8rif:6 (2.79) BS02 ZN N/A N/A P53091 N/A
    867870 8rif:7 (2.79) BS01 ADP N/A N/A P38132 N/A
    867871 8rif:7 (2.79) BS02 ZN N/A N/A P38132 N/A
    867872 8rif:A (2.79) BS01 ATP N/A N/A P29469 N/A
    867873 8rif:A (2.79) BS02 ZN N/A N/A P29469 N/A
    867874 8rif:A (2.79) BS03 ADP N/A N/A P29469 N/A
    867875 8rif:B (2.79) BS01 ADP N/A N/A P24279 N/A
    867876 8rif:C (2.79) BS01 ZN N/A N/A P30665 N/A
    867877 8rif:D (2.79) BS01 ADP N/A N/A P29496 N/A
    867878 8rif:D (2.79) BS02 ADP N/A N/A P29496 N/A
    867879 8rif:D (2.79) BS03 ZN N/A N/A P29496 N/A
    867880 8rif:E (2.79) BS01 dna N/A N/A P53091 N/A
    867881 8rif:E (2.79) BS02 ZN N/A N/A P53091 N/A
    867882 8rif:F (2.79) BS01 ADP N/A N/A P38132 N/A
    867883 8rif:F (2.79) BS02 ZN N/A N/A P38132 N/A
    867884 8rig:2 (3.41) BS01 ATP N/A N/A P29469 N/A
    867885 8rig:2 (3.41) BS02 ZN N/A N/A P29469 N/A
    867886 8rig:2 (3.41) BS03 ADP N/A N/A P29469 N/A
    867887 8rig:3 (3.41) BS01 dna N/A N/A P24279 N/A
    867888 8rig:3 (3.41) BS02 ADP N/A N/A P24279 N/A
    867889 8rig:3 (3.41) BS03 ADP N/A N/A P24279 N/A
    867890 8rig:4 (3.41) BS01 dna N/A N/A P30665 N/A
    867891 8rig:4 (3.41) BS02 ADP N/A N/A P30665 N/A
    867892 8rig:4 (3.41) BS03 ZN N/A N/A P30665 N/A
    867893 8rig:4 (3.41) BS04 ATP N/A N/A P30665 N/A
    867894 8rig:5 (3.41) BS01 ADP N/A N/A P29496 N/A
    867895 8rig:5 (3.41) BS02 ZN N/A N/A P29496 N/A
    867896 8rig:6 (3.41) BS01 dna N/A N/A P53091 N/A
    867897 8rig:6 (3.41) BS02 ATP N/A N/A P53091 N/A
    867898 8rig:6 (3.41) BS03 ZN N/A N/A P53091 N/A
    867899 8rig:7 (3.41) BS01 dna N/A N/A P38132 N/A
    867900 8rig:7 (3.41) BS02 ZN N/A N/A P38132 N/A
    867901 8rig:7 (3.41) BS03 ADP N/A N/A P38132 N/A
    867902 8rih:A (2.74) BS01 CA N/A GO:0005634 ... Q04179 39000137
    867903 8rih:B (2.74) BS01 CA N/A GO:0005634 ... Q04179 39000137
    867904 8rij:A (1.96) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 38348661
    867905 8rij:A (1.96) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 38348661
    867906 8rij:A (1.96) BS03 CA 3.4.24.65 GO:0004222 ... P39900 38348661
    867907 8rij:A (1.96) BS04 CA 3.4.24.65 GO:0004222 ... P39900 38348661
    867908 8rij:A (1.96) BS05 CA 3.4.24.65 GO:0004222 ... P39900 38348661
    867909 8rij:A (1.96) BS06 A1H07 3.4.24.65 GO:0004222 ... P39900 38348661
    867910 8rik:A (3.6) BS01 GTP N/A GO:0000226 ... Q2XVP4 N/A
    867911 8rik:B (3.6) BS01 GDP N/A GO:0000226 ... P02554 N/A
    867912 8rik:B (3.6) BS02 TA1 N/A GO:0000226 ... P02554 N/A
    867913 8rik:K (3.6) BS01 peptide N/A GO:0003777 ... P33176 N/A
    867914 8rik:K (3.6) BS02 ADP N/A GO:0003777 ... P33176 N/A
    867915 8rim:A (1.9) BS01 MN N/A GO:0000050 ... P78540 39540340
    867916 8rim:A (1.9) BS02 MN N/A GO:0000050 ... P78540 39540340
    867917 8rim:A (1.9) BS03 A1H04 N/A GO:0000050 ... P78540 39540340
    867918 8rim:B (1.9) BS01 MN N/A GO:0000050 ... P78540 39540340
    867919 8rim:B (1.9) BS02 MN N/A GO:0000050 ... P78540 39540340
    867920 8rim:C (1.9) BS01 MN N/A GO:0000050 ... P78540 39540340
    867921 8rim:C (1.9) BS02 MN N/A GO:0000050 ... P78540 39540340
    867922 8rim:C (1.9) BS03 A1H04 N/A GO:0000050 ... P78540 39540340
    867923 8rio:A (1.45) BS01 ZN N/A N/A A1B802 N/A
    867924 8rio:A (1.45) BS02 PRO N/A N/A A1B802 N/A
    867925 8rio:B (1.45) BS01 ZN N/A N/A A1B802 N/A
    867926 8rio:B (1.45) BS02 PRO N/A N/A A1B802 N/A
    867927 8rip:A (1.81) BS01 COA N/A N/A A1B802 N/A
    867928 8rip:A (1.81) BS02 ZN N/A N/A A1B802 N/A
    867929 8rip:B (1.81) BS01 COA N/A N/A A1B802 N/A
    867930 8rip:B (1.81) BS02 ZN N/A N/A A1B802 N/A
    867931 8rip:C (1.81) BS01 ZN N/A N/A A1B802 N/A
    867932 8rip:D (1.81) BS01 ZN N/A N/A A1B802 N/A
    867933 8riu:A (1.89) BS01 SF4 N/A GO:0003824 ... A0A7R9N4A5 N/A
    867934 8riu:A (1.89) BS02 SF4 N/A GO:0003824 ... A0A7R9N4A5 N/A
    867935 8riu:A (1.89) BS03 SF4 N/A GO:0003824 ... A0A7R9N4A5 N/A
    867936 8riu:A (1.89) BS04 XCC N/A GO:0003824 ... A0A7R9N4A5 N/A
    867937 8riu:A (1.89) BS05 SF4 N/A GO:0003824 ... A0A7R9N4A5 N/A
    867938 8riu:B (1.89) BS01 SF4 N/A GO:0000166 ... A0A7R9R773 N/A
    867939 8riu:B (1.89) BS02 SF4 N/A GO:0000166 ... A0A7R9R773 N/A
    867940 8riu:B (1.89) BS03 FAD N/A GO:0000166 ... A0A7R9R773 N/A
    867941 8riu:B (1.89) BS04 SF4 N/A GO:0000166 ... A0A7R9R773 N/A
    867942 8riu:D (1.89) BS01 SF4 N/A GO:0003824 ... A0A7R9N4A5 N/A
    867943 8riu:D (1.89) BS02 SF4 N/A GO:0003824 ... A0A7R9N4A5 N/A
    867944 8riu:D (1.89) BS03 SF4 N/A GO:0003824 ... A0A7R9N4A5 N/A
    867945 8riu:D (1.89) BS04 SF4 N/A GO:0003824 ... A0A7R9N4A5 N/A
    867946 8riu:D (1.89) BS05 XCC N/A GO:0003824 ... A0A7R9N4A5 N/A
    867947 8riu:E (1.89) BS01 SF4 N/A GO:0000166 ... A0A7R9R773 N/A
    867948 8riu:E (1.89) BS02 SF4 N/A GO:0000166 ... A0A7R9R773 N/A
    867949 8riu:E (1.89) BS03 FAD N/A GO:0000166 ... A0A7R9R773 N/A
    867950 8riu:E (1.89) BS04 SF4 N/A GO:0000166 ... A0A7R9R773 N/A
    867951 8riv:A (2.78) BS01 GTP 3.6.5.- GO:0000226 ... P81947 38487227
    867952 8riv:A (2.78) BS02 CA 3.6.5.- GO:0000226 ... P81947 38487227
    867953 8riv:A (2.78) BS03 A1H01 3.6.5.- GO:0000226 ... P81947 38487227
    867954 8riv:B (2.78) BS01 GDP ? GO:0000226 ... Q6B856 38487227
    867955 8riv:B (2.78) BS02 A1H01 ? GO:0000226 ... Q6B856 38487227
    867956 8riv:C (2.78) BS01 GTP 3.6.5.- GO:0000226 ... P81947 38487227
    867957 8riv:C (2.78) BS02 CA 3.6.5.- GO:0000226 ... P81947 38487227
    867958 8riv:D (2.78) BS01 GDP ? GO:0000226 ... Q6B856 38487227
    867959 8riv:D (2.78) BS02 A1H01 ? GO:0000226 ... Q6B856 38487227
    867960 8riv:F (2.78) BS01 ACP 6.3.2.25 GO:0000226 ... A0A8V0Z8P0 38487227
    867961 8riw:A (2.57) BS01 GTP 3.6.5.- GO:0000226 ... P81947 38487227
    867962 8riw:A (2.57) BS02 CA 3.6.5.- GO:0000226 ... P81947 38487227
    867963 8riw:B (2.57) BS01 GDP ? GO:0000226 ... Q6B856 38487227
    867964 8riw:B (2.57) BS02 A1H00 ? GO:0000226 ... Q6B856 38487227
    867965 8riw:C (2.57) BS01 GTP 3.6.5.- GO:0000226 ... P81947 38487227
    867966 8riw:C (2.57) BS02 CA 3.6.5.- GO:0000226 ... P81947 38487227
    867967 8riw:D (2.57) BS01 GDP ? GO:0000226 ... Q6B856 38487227
    867968 8riw:D (2.57) BS02 A1H00 ? GO:0000226 ... Q6B856 38487227
    867969 8riw:F (2.57) BS01 ACP 6.3.2.25 GO:0000226 ... A0A8V0Z8P0 38487227
    867970 8rix:A (1.99) BS01 G4P N/A N/A O80842 N/A
    867971 8riy:AAA (2.288) BS01 W0O 2.7.7.96
    3.6.1.13
    3.6.1.58
    GO:0000287 ... Q9UKK9 38635563
    867972 8riy:AAA (2.288) BS02 W0O 2.7.7.96
    3.6.1.13
    3.6.1.58
    GO:0000287 ... Q9UKK9 38635563
    867973 8riy:BBB (2.288) BS01 W0O 2.7.7.96
    3.6.1.13
    3.6.1.58
    GO:0000287 ... Q9UKK9 38635563
    867974 8riy:BBB (2.288) BS02 W0O 2.7.7.96
    3.6.1.13
    3.6.1.58
    GO:0000287 ... Q9UKK9 38635563
    867975 8riz:A (3.6) BS01 GTP N/A GO:0000226 ... Q2XVP4 N/A
    867976 8riz:B (3.6) BS01 GDP N/A GO:0000226 ... P02554 N/A
    867977 8riz:B (3.6) BS02 TA1 N/A GO:0000226 ... P02554 N/A
    867978 8riz:K (3.6) BS01 peptide N/A GO:0003777 ... P33176 N/A
    867979 8riz:K (3.6) BS02 ADP N/A GO:0003777 ... P33176 N/A
    867980 8riz:L (3.6) BS01 peptide N/A GO:0003777 ... P33176 N/A
    867981 8riz:L (3.6) BS02 ADP N/A GO:0003777 ... P33176 N/A
    867982 8rj2:A (1.12) BS01 ZN N/A GO:0002009 ... P00918 38856178
    867983 8rj2:A (1.12) BS02 YNF N/A GO:0002009 ... P00918 38856178
    867984 8rj4:A (2.11) BS01 ADP N/A GO:0000287 ... P69441 39121211
    867985 8rj4:A (2.11) BS02 ADP N/A GO:0000287 ... P69441 39121211
    867986 8rj4:B (2.11) BS01 ADP N/A GO:0000287 ... P69441 39121211
    867987 8rj4:B (2.11) BS02 ADP N/A GO:0000287 ... P69441 39121211
    867988 8rj4:C (2.11) BS01 ADP N/A GO:0000287 ... P69441 39121211
    867989 8rj4:C (2.11) BS02 ADP N/A GO:0000287 ... P69441 39121211
    867990 8rj4:D (2.11) BS01 ADP N/A GO:0000287 ... P69441 39121211
    867991 8rj4:D (2.11) BS02 ADP N/A GO:0000287 ... P69441 39121211
    867992 8rj5:A (3.02) BS01 peptide N/A N/A A0A5H2UYS3 N/A
    867993 8rj5:D (3.02) BS01 peptide N/A N/A N/A N/A
    867994 8rj5:E (3.02) BS01 peptide N/A N/A N/A N/A
    867995 8rj5:F (3.02) BS01 peptide N/A N/A A0A5H2UYS3 N/A
    867996 8rj5:I (3.02) BS01 peptide N/A N/A N/A N/A
    867997 8rj6:A (1.9) BS01 ATP N/A GO:0000287 ... P69441 39121211
    867998 8rj6:A (1.9) BS02 ADP N/A GO:0000287 ... P69441 39121211
    867999 8rj6:A (1.9) BS03 AMP N/A GO:0000287 ... P69441 39121211
    868000 8rj6:B (1.9) BS01 ADP N/A GO:0000287 ... P69441 39121211

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).