SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    868201 8rjd:S (2.78574) BS02 rna ? GO:0003735 ... G1TTY7 38896445
    868202 8rjd:T (2.78574) BS01 rna ? GO:0003735 ... G1SHQ2 38896445
    868203 8rjd:T (2.78574) BS02 rna ? GO:0003735 ... G1SHQ2 38896445
    868204 8rjd:U (2.78574) BS01 rna ? GO:0002181 ... G1TSG1 38896445
    868205 8rjd:V (2.78574) BS01 rna ? GO:0003735 ... G1T6D1 38896445
    868206 8rjd:W (2.78574) BS01 rna ? GO:0000027 ... G1SE28 38896445
    868207 8rjd:X (2.78574) BS01 rna ? GO:0003735 ... G1SE76 38896445
    868208 8rjd:X (2.78574) BS02 rna ? GO:0003735 ... G1SE76 38896445
    868209 8rjd:Y (2.78574) BS01 rna ? GO:0003723 ... G1SQH0 38896445
    868210 8rjd:Y (2.78574) BS02 rna ? GO:0003723 ... G1SQH0 38896445
    868211 8rjd:Z (2.78574) BS01 rna ? GO:0003735 ... G1TXF6 38896445
    868212 8rjd:a (2.78574) BS01 rna ? GO:0003735 ... G1SNY0 38896445
    868213 8rjd:b (2.78574) BS01 rna ? GO:0002181 ... G1SGR6 38896445
    868214 8rjd:c (2.78574) BS01 rna ? GO:0002181 ... G1TDL2 38896445
    868215 8rjd:d (2.78574) BS01 rna ? GO:0002181 ... G1SHG0 38896445
    868216 8rjd:e (2.78574) BS01 rna ? GO:0003735 ... G1TUN8 38896445
    868217 8rjd:f (2.78574) BS01 rna ? GO:0000049 ... G1SF08 38896445
    868218 8rjd:g (2.78574) BS01 rna ? GO:0003735 ... G1TXG5 38896445
    868219 8rjd:g (2.78574) BS02 MG ? GO:0003735 ... G1TXG5 38896445
    868220 8rjd:g (2.78574) BS03 ZN ? GO:0003735 ... G1TXG5 38896445
    868221 8rjd:h (2.78574) BS01 rna ? GO:0000463 ... G1SIT5 38896445
    868222 8rjd:h (2.78574) BS02 rna ? GO:0000463 ... G1SIT5 38896445
    868223 8rjd:i (2.78574) BS01 rna ? GO:0003735 ... G1TTQ5 38896445
    868224 8rjd:j (2.78574) BS01 rna ? GO:0003723 ... U3KPD5 38896445
    868225 8rjd:j (2.78574) BS02 rna ? GO:0003723 ... U3KPD5 38896445
    868226 8rjd:j (2.78574) BS03 ZN ? GO:0003723 ... U3KPD5 38896445
    868227 8rjd:k (2.78574) BS01 rna ? GO:0003735 ... G1U001 38896445
    868228 8rjd:l (2.78574) BS01 rna ? GO:0003735 ... G1TTN1 38896445
    868229 8rjd:l (2.78574) BS02 rna ? GO:0003735 ... G1TTN1 38896445
    868230 8rjd:m (2.78574) BS01 rna N/A GO:0003735 ... P0DXC2 38896445
    868231 8rjd:m (2.78574) BS02 ZN N/A GO:0003735 ... P0DXC2 38896445
    868232 8rjd:o (2.78574) BS01 rna ? GO:0003735 ... G1T040 38896445
    868233 8rjd:o (2.78574) BS02 ZN ? GO:0003735 ... G1T040 38896445
    868234 8rjd:p (2.78574) BS01 rna ? GO:0003735 ... G1SY53 38896445
    868235 8rjd:p (2.78574) BS02 ZN ? GO:0003735 ... G1SY53 38896445
    868236 8rjd:r (2.78574) BS01 rna ? GO:0003735 ... G1U7L1 38896445
    868237 8rjd:w (2.78574) BS01 rna ? GO:0003723 ... G1TL06 38896445
    868238 8rjf:A (3.1) BS01 ADP N/A GO:0016887 ... A0A0H3CDS2 39103374
    868239 8rjf:B (3.1) BS01 ADP N/A GO:0016887 ... A0A0H3CDS2 39103374
    868240 8rjf:C (3.1) BS01 ADP N/A GO:0016887 ... A0A0H3CDS2 39103374
    868241 8rjf:D (3.1) BS01 ADP N/A GO:0016887 ... A0A0H3CDS2 39103374
    868242 8rjf:E (3.1) BS01 ADP N/A GO:0016887 ... A0A0H3CDS2 39103374
    868243 8rjf:F (3.1) BS01 ADP N/A GO:0016887 ... A0A0H3CDS2 39103374
    868244 8rjh:A (2.6) BS01 peptide N/A N/A A0A411J078 N/A
    868245 8rjh:D (2.6) BS01 peptide N/A N/A A0A411J078 N/A
    868246 8rjh:G (2.6) BS01 peptide N/A N/A A0A411J078 N/A
    868247 8rjh:J (2.6) BS01 peptide N/A N/A A0A411J078 N/A
    868248 8rjh:M (2.6) BS01 peptide N/A N/A A0A411J078 N/A
    868249 8rjh:P (2.6) BS01 peptide N/A N/A A0A411J078 N/A
    868250 8rji:A (2.3) BS01 peptide N/A N/A A0A411J078 N/A
    868251 8rji:D (2.3) BS01 peptide N/A N/A A0A411J078 N/A
    868252 8rji:G (2.3) BS01 peptide N/A N/A A0A411J078 N/A
    868253 8rji:J (2.3) BS01 peptide N/A N/A A0A411J078 N/A
    868254 8rjv:A (1.91) BS01 A1H1J 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 38753594
    868255 8rjw:B (2.3) BS01 dna ? GO:0000724 ... P43351 38658755
    868256 8rjw:C (2.3) BS01 dna ? GO:0000724 ... P43351 38658755
    868257 8rjw:D (2.3) BS01 dna ? GO:0000724 ... P43351 38658755
    868258 8rjw:E (2.3) BS01 dna ? GO:0000724 ... P43351 38658755
    868259 8rjw:F (2.3) BS01 dna ? GO:0000724 ... P43351 38658755
    868260 8rjw:G (2.3) BS01 dna ? GO:0000724 ... P43351 38658755
    868261 8rjy:A (1.97) BS01 A1H1K 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 38753594
    868262 8rjz:A (1.7) BS01 A1H1I 2.7.7.50
    3.4.19.12
    3.4.22.69
    GO:0008233 ... P0DTD1 38753594
    868263 8rjz:B (1.7) BS01 A1H1I 2.7.7.50
    3.4.19.12
    3.4.22.69
    GO:0008233 ... P0DTD1 38753594
    868264 8rk1:A (2.095) BS01 FE ? GO:0006826 ... Q7V0T9 38489389
    868265 8rkd:A (3.8) BS01 ANP N/A GO:0016887 ... A0A0H3CDS2 39103374
    868266 8rkd:C (3.8) BS01 ADP N/A GO:0016887 ... A0A0H3CDS2 39103374
    868267 8rkd:D (3.8) BS01 ANP N/A GO:0016887 ... A0A0H3CDS2 39103374
    868268 8rkd:F (3.8) BS01 ADP N/A GO:0016887 ... A0A0H3CDS2 39103374
    868269 8rke:B (2.7) BS01 MAN ? N/A Q05996 38490181
    868270 8rke:B (2.7) BS02 MAN ? N/A Q05996 38490181
    868271 8rkg:A (2.9) BS01 peptide ? N/A A1L3D9 38490181
    868272 8rkg:A (2.9) BS02 peptide ? N/A A1L3D9 38490181
    868273 8rkg:B (2.9) BS01 peptide ? N/A A1L3D9 38490181
    868274 8rkg:B (2.9) BS02 peptide ? N/A A1L3D9 38490181
    868275 8rkg:C (2.9) BS01 peptide ? N/A A1L3D9 38490181
    868276 8rkg:C (2.9) BS02 peptide ? N/A A1L3D9 38490181
    868277 8rkg:D (2.9) BS01 peptide ? N/A A1L3D9 38490181
    868278 8rkg:D (2.9) BS02 peptide ? N/A A1L3D9 38490181
    868279 8rkg:E (2.9) BS01 peptide ? N/A A1L3D9 38490181
    868280 8rkg:E (2.9) BS02 peptide ? N/A A1L3D9 38490181
    868281 8rkg:F (2.9) BS01 peptide ? N/A A1L3D9 38490181
    868282 8rkg:F (2.9) BS02 peptide ? N/A A1L3D9 38490181
    868283 8rkg:G (2.9) BS01 peptide ? N/A A1L3D9 38490181
    868284 8rkg:G (2.9) BS02 peptide ? N/A A1L3D9 38490181
    868285 8rkg:H (2.9) BS01 peptide ? N/A A1L3D9 38490181
    868286 8rkg:H (2.9) BS02 peptide ? N/A A1L3D9 38490181
    868287 8rkh:A (1.9) BS01 MAN ? N/A P20239 38490181
    868288 8rkp:A (1.63) BS01 ASC N/A GO:0046872 ... F7J213 38937973
    868289 8rkp:A (1.63) BS02 ASC N/A GO:0046872 ... F7J213 38937973
    868290 8rkp:A (1.63) BS03 ASC N/A GO:0046872 ... F7J213 38937973
    868291 8rkp:A (1.63) BS04 HEC N/A GO:0046872 ... F7J213 38937973
    868292 8rkq:A (2.6) BS01 9SZ 1.2.1.88 GO:0003842 ... P30038 38675584
    868293 8rkq:D (2.6) BS01 9SZ 1.2.1.88 GO:0003842 ... P30038 38675584
    868294 8rkr:A (1.2) BS01 A1H1O 1.2.1.88 GO:0003842 ... P30038 38675584
    868295 8rks:A (3.1) BS01 peptide ? GO:0005515 ... Q9UBQ0 38607248
    868296 8rks:C (3.1) BS01 peptide ? GO:0005515 ... Q9UBQ0 38607248
    868297 8rks:E (3.1) BS01 peptide ? GO:0005515 ... Q9UBQ0 38607248
    868298 8rks:G (3.1) BS01 peptide ? GO:0005515 ... Q9UBQ0 38607248
    868299 8rkt:A (2.35) BS01 rna N/A N/A A0A8M0FGU0 38834066
    868300 8rkt:A (2.35) BS02 dna N/A N/A A0A8M0FGU0 38834066
    868301 8rkt:A (2.35) BS03 dna N/A N/A A0A8M0FGU0 38834066
    868302 8rkt:B (2.35) BS01 rna N/A GO:0003735 ... A0A139X9A4 38834066
    868303 8rkt:C (2.35) BS01 rna N/A N/A A0A8J0PCL5 38834066
    868304 8rkt:C (2.35) BS02 dna N/A N/A A0A8J0PCL5 38834066
    868305 8rkt:C (2.35) BS03 ZN N/A N/A A0A8J0PCL5 38834066
    868306 8rkt:C (2.35) BS04 ZN N/A N/A A0A8J0PCL5 38834066
    868307 8rku:D (2.3) BS01 ATP N/A N/A A0A8J0PCL3 38834066
    868308 8rku:E (2.3) BS01 ATP N/A N/A A0A8J0PCL3 38834066
    868309 8rku:E (2.3) BS02 ATP N/A N/A A0A8J0PCL3 38834066
    868310 8rku:F (2.3) BS01 ATP N/A N/A A0A8J0PCL3 38834066
    868311 8rku:F (2.3) BS02 ATP N/A N/A A0A8J0PCL3 38834066
    868312 8rku:G (2.3) BS01 ATP N/A N/A A0A8J0PCL3 38834066
    868313 8rku:G (2.3) BS02 ATP N/A N/A A0A8J0PCL3 38834066
    868314 8rku:H (2.3) BS01 dna N/A N/A A0A8J0PCL3 38834066
    868315 8rku:H (2.3) BS02 ATP N/A N/A A0A8J0PCL3 38834066
    868316 8rku:H (2.3) BS03 ATP N/A N/A A0A8J0PCL3 38834066
    868317 8rku:I (2.3) BS01 dna N/A N/A A0A8J0PCL3 38834066
    868318 8rku:I (2.3) BS02 ATP N/A N/A A0A8J0PCL3 38834066
    868319 8rku:I (2.3) BS03 ATP N/A N/A A0A8J0PCL3 38834066
    868320 8rku:J (2.3) BS01 ATP N/A N/A A0A8J0PCL3 38834066
    868321 8rku:J (2.3) BS02 ATP N/A N/A A0A8J0PCL3 38834066
    868322 8rku:K (2.3) BS01 ATP N/A N/A A0A8J0PCL3 38834066
    868323 8rku:K (2.3) BS02 ATP N/A N/A A0A8J0PCL3 38834066
    868324 8rku:L (2.3) BS01 ATP N/A N/A A0A8J0PCL3 38834066
    868325 8rku:L (2.3) BS02 ATP N/A N/A A0A8J0PCL3 38834066
    868326 8rku:L (2.3) BS03 MG N/A N/A A0A8J0PCL3 38834066
    868327 8rku:M (2.3) BS01 dna N/A N/A A0A8J0PCL3 38834066
    868328 8rku:M (2.3) BS02 ATP N/A N/A A0A8J0PCL3 38834066
    868329 8rku:M (2.3) BS03 ATP N/A N/A A0A8J0PCL3 38834066
    868330 8rku:N (2.3) BS01 dna N/A N/A A0A8J0PCL3 38834066
    868331 8rku:N (2.3) BS02 ATP N/A N/A A0A8J0PCL3 38834066
    868332 8rku:N (2.3) BS03 ATP N/A N/A A0A8J0PCL3 38834066
    868333 8rku:O (2.3) BS01 dna N/A N/A A0A8J0PCL3 38834066
    868334 8rku:O (2.3) BS02 ATP N/A N/A A0A8J0PCL3 38834066
    868335 8rku:O (2.3) BS03 ATP N/A N/A A0A8J0PCL3 38834066
    868336 8rku:P (2.3) BS01 dna N/A N/A A0A8J0PCL3 38834066
    868337 8rku:P (2.3) BS02 ATP N/A N/A A0A8J0PCL3 38834066
    868338 8rku:P (2.3) BS03 ATP N/A N/A A0A8J0PCL3 38834066
    868339 8rku:Q (2.3) BS01 ATP N/A N/A A0A8J0PCL3 38834066
    868340 8rkv:R (3.11) BS01 dna N/A GO:0003676 ... A0A979HMQ2 38834066
    868341 8rkv:R (3.11) BS02 dna N/A GO:0003676 ... A0A979HMQ2 38834066
    868342 8rkv:R (3.11) BS03 dna N/A GO:0003676 ... A0A979HMQ2 38834066
    868343 8rkv:R (3.11) BS04 dna N/A GO:0003676 ... A0A979HMQ2 38834066
    868344 8rkv:R (3.11) BS05 dna N/A GO:0003676 ... A0A979HMQ2 38834066
    868345 8rkv:R (3.11) BS06 MG N/A GO:0003676 ... A0A979HMQ2 38834066
    868346 8rkv:S (3.11) BS01 dna N/A GO:0003676 ... A0A979HMQ2 38834066
    868347 8rkv:S (3.11) BS02 dna N/A GO:0003676 ... A0A979HMQ2 38834066
    868348 8rkv:S (3.11) BS03 dna N/A GO:0003676 ... A0A979HMQ2 38834066
    868349 8rkv:S (3.11) BS04 dna N/A GO:0003676 ... A0A979HMQ2 38834066
    868350 8rkv:S (3.11) BS05 dna N/A GO:0003676 ... A0A979HMQ2 38834066
    868351 8rkv:S (3.11) BS06 MG N/A GO:0003676 ... A0A979HMQ2 38834066
    868352 8rkv:T (3.11) BS01 dna N/A GO:0003676 ... A0A979HMQ2 38834066
    868353 8rkv:T (3.11) BS02 dna N/A GO:0003676 ... A0A979HMQ2 38834066
    868354 8rkv:U (3.11) BS01 dna N/A GO:0003676 ... A0A979HMQ2 38834066
    868355 8rkv:U (3.11) BS02 dna N/A GO:0003676 ... A0A979HMQ2 38834066
    868356 8rky:AAA (2.17) BS01 A1H1R N/A N/A Q8KRS7 N/A
    868357 8rky:AAA (2.17) BS02 A1H1R N/A N/A Q8KRS7 N/A
    868358 8rky:BBB (2.17) BS01 A1H1R N/A N/A Q8KRS7 N/A
    868359 8rky:BBB (2.17) BS02 A1H1Q N/A N/A Q8KRS7 N/A
    868360 8rky:BBB (2.17) BS03 A1H1R N/A N/A Q8KRS7 N/A
    868361 8rky:CCC (2.17) BS01 A1H1Q N/A N/A Q8KRS7 N/A
    868362 8rky:CCC (2.17) BS02 A1H1R N/A N/A Q8KRS7 N/A
    868363 8rky:CCC (2.17) BS03 A1H1Q N/A N/A Q8KRS7 N/A
    868364 8rl2:CA (2.84) BS01 rna N/A N/A P56537 N/A
    868365 8rl2:CB (2.84) BS01 rna N/A N/A Q13823 N/A
    868366 8rl2:CB (2.84) BS02 GTP N/A N/A Q13823 N/A
    868367 8rl2:CB (2.84) BS03 MG N/A N/A Q13823 N/A
    868368 8rl2:CC (2.84) BS01 rna N/A N/A Q9BVP2 N/A
    868369 8rl2:CD (2.84) BS01 rna N/A N/A Q9BZE4 N/A
    868370 8rl2:CD (2.84) BS02 rna N/A N/A Q9BZE4 N/A
    868371 8rl2:CD (2.84) BS03 GDP N/A N/A Q9BZE4 N/A
    868372 8rl2:CD (2.84) BS04 MG N/A N/A Q9BZE4 N/A
    868373 8rl2:CE (2.84) BS01 rna N/A N/A Q9BRT6 N/A
    868374 8rl2:CF (2.84) BS01 rna N/A N/A Q9UKD2 N/A
    868375 8rl2:CH (2.84) BS01 rna N/A N/A O95478 N/A
    868376 8rl2:CI (2.84) BS01 rna N/A N/A Q9UHA3 N/A
    868377 8rl2:CI (2.84) BS02 ZN N/A N/A Q9UHA3 N/A
    868378 8rl2:CJ (2.84) BS01 rna N/A N/A Q9H7B2 N/A
    868379 8rl2:CJ (2.84) BS02 rna N/A N/A Q9H7B2 N/A
    868380 8rl2:CK (2.84) BS01 rna N/A N/A Q15050 N/A
    868381 8rl2:CL (2.84) BS01 rna N/A N/A O00488 N/A
    868382 8rl2:CL (2.84) BS02 ZN N/A N/A O00488 N/A
    868383 8rl2:LA (2.84) BS01 rna N/A N/A P62917 N/A
    868384 8rl2:LB (2.84) BS01 rna N/A N/A P39023 N/A
    868385 8rl2:LC (2.84) BS01 rna N/A N/A P36578 N/A
    868386 8rl2:LC (2.84) BS02 rna N/A N/A P36578 N/A
    868387 8rl2:LD (2.84) BS01 rna N/A N/A P46777 N/A
    868388 8rl2:LD (2.84) BS02 rna N/A N/A P46777 N/A
    868389 8rl2:LE (2.84) BS01 rna N/A N/A Q02878 N/A
    868390 8rl2:LF (2.84) BS01 rna N/A N/A P18124 N/A
    868391 8rl2:LG (2.84) BS01 rna N/A N/A P62424 N/A
    868392 8rl2:LG (2.84) BS02 rna N/A N/A P62424 N/A
    868393 8rl2:LH (2.84) BS01 rna N/A N/A P32969 N/A
    868394 8rl2:LJ (2.84) BS01 rna N/A N/A P62913 N/A
    868395 8rl2:LJ (2.84) BS02 rna N/A N/A P62913 N/A
    868396 8rl2:LL (2.84) BS01 rna N/A N/A P26373 N/A
    868397 8rl2:LL (2.84) BS02 rna N/A N/A P26373 N/A
    868398 8rl2:LM (2.84) BS01 rna N/A N/A P50914 N/A
    868399 8rl2:LN (2.84) BS01 rna N/A N/A P61313 N/A
    868400 8rl2:LN (2.84) BS02 rna N/A N/A P61313 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).