SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    868401 8qy3:A (1.24) BS01 XYP N/A GO:0004553 ... P09850 39185686
    868402 8qy3:A (1.24) BS02 XYP N/A GO:0004553 ... P09850 39185686
    868403 8qy3:A (1.24) BS03 ZN N/A GO:0004553 ... P09850 39185686
    868404 8qyc:A (2.75) BS01 AGS N/A GO:0005524 ... A7ZI07 39662505
    868405 8qyd:A (2.67) BS01 CA N/A GO:0005886 ... A7ZI10 39662505
    868406 8qyd:A (2.67) BS02 CA N/A GO:0005886 ... A7ZI10 39662505
    868407 8qyd:B (2.67) BS01 CA N/A GO:0005886 ... A7ZI10 39662505
    868408 8qyd:B (2.67) BS02 CA N/A GO:0005886 ... A7ZI10 39662505
    868409 8qyd:C (2.67) BS01 CA N/A GO:0005886 ... A7ZI10 39662505
    868410 8qyd:C (2.67) BS02 CA N/A GO:0005886 ... A7ZI10 39662505
    868411 8qyd:D (2.67) BS01 CA N/A GO:0005886 ... A7ZI10 39662505
    868412 8qyd:D (2.67) BS02 CA N/A GO:0005886 ... A7ZI10 39662505
    868413 8qyd:E (2.67) BS01 CA N/A GO:0005886 ... A7ZI10 39662505
    868414 8qyd:E (2.67) BS02 CA N/A GO:0005886 ... A7ZI10 39662505
    868415 8qyf:A (2.33) BS01 6V8 3.4.21.92 GO:0004176 ... Q5HQW0 38296985
    868416 8qyf:B (2.33) BS01 6V8 3.4.21.92 GO:0004176 ... Q5HQW0 38296985
    868417 8qyf:C (2.33) BS01 6V8 3.4.21.92 GO:0004176 ... Q5HQW0 38296985
    868418 8qyf:D (2.33) BS01 6V8 3.4.21.92 GO:0004176 ... Q5HQW0 38296985
    868419 8qyf:E (2.33) BS01 6V8 3.4.21.92 GO:0004176 ... Q5HQW0 38296985
    868420 8qyf:F (2.33) BS01 6V8 3.4.21.92 GO:0004176 ... Q5HQW0 38296985
    868421 8qyf:G (2.33) BS01 6V8 3.4.21.92 GO:0004176 ... Q5HQW0 38296985
    868422 8qyf:H (2.33) BS01 6V8 3.4.21.92 GO:0004176 ... Q5HQW0 38296985
    868423 8qyf:I (2.33) BS01 6V8 3.4.21.92 GO:0004176 ... Q5HQW0 38296985
    868424 8qyf:J (2.33) BS01 6V8 3.4.21.92 GO:0004176 ... Q5HQW0 38296985
    868425 8qyf:K (2.33) BS01 6V8 3.4.21.92 GO:0004176 ... Q5HQW0 38296985
    868426 8qyf:L (2.33) BS01 6V8 3.4.21.92 GO:0004176 ... Q5HQW0 38296985
    868427 8qyf:M (2.33) BS01 6V8 3.4.21.92 GO:0004176 ... Q5HQW0 38296985
    868428 8qyf:N (2.33) BS01 6V8 3.4.21.92 GO:0004176 ... Q5HQW0 38296985
    868429 8qyg:A (1.15) BS01 FMN ? GO:0005829 ... A0A6H0WK49 38946302
    868430 8qyg:A (1.15) BS02 FMN ? GO:0005829 ... A0A6H0WK49 38946302
    868431 8qyg:B (1.15) BS01 FMN ? GO:0005829 ... A0A6H0WK49 38946302
    868432 8qyg:B (1.15) BS02 FMN ? GO:0005829 ... A0A6H0WK49 38946302
    868433 8qyg:B (1.15) BS03 MG ? GO:0005829 ... A0A6H0WK49 38946302
    868434 8qyi:A (2.3) BS01 HEM N/A GO:0004497 ... Q59819 38971159
    868435 8qyi:A (2.3) BS02 4OA N/A GO:0004497 ... Q59819 38971159
    868436 8qyi:B (2.3) BS01 HEM N/A GO:0004497 ... Q59819 38971159
    868437 8qyi:B (2.3) BS02 4OA N/A GO:0004497 ... Q59819 38971159
    868438 8qyi:C (2.3) BS01 HEM N/A GO:0004497 ... Q59819 38971159
    868439 8qyi:C (2.3) BS02 4OA N/A GO:0004497 ... Q59819 38971159
    868440 8qyi:D (2.3) BS01 HEM N/A GO:0004497 ... Q59819 38971159
    868441 8qyi:D (2.3) BS02 4OA N/A GO:0004497 ... Q59819 38971159
    868442 8qyi:E (2.3) BS01 HEM N/A GO:0004497 ... Q59819 38971159
    868443 8qyi:E (2.3) BS02 4OA N/A GO:0004497 ... Q59819 38971159
    868444 8qyi:F (2.3) BS01 HEM N/A GO:0004497 ... Q59819 38971159
    868445 8qyi:F (2.3) BS02 4OA N/A GO:0004497 ... Q59819 38971159
    868446 8qyk:A (2.07) BS01 CA N/A N/A A7ZI10 39662505
    868447 8qyk:A (2.07) BS02 CA N/A N/A A7ZI10 39662505
    868448 8qyk:B (2.07) BS01 CA N/A N/A A7ZI10 39662505
    868449 8qyk:B (2.07) BS02 CA N/A N/A A7ZI10 39662505
    868450 8qyk:C (2.07) BS01 CA N/A N/A A7ZI10 39662505
    868451 8qyk:C (2.07) BS02 CA N/A N/A A7ZI10 39662505
    868452 8qyk:D (2.07) BS01 CA N/A N/A A7ZI10 39662505
    868453 8qyk:D (2.07) BS02 CA N/A N/A A7ZI10 39662505
    868454 8qyk:E (2.07) BS01 CA N/A N/A A7ZI10 39662505
    868455 8qyk:E (2.07) BS02 CA N/A N/A A7ZI10 39662505
    868456 8qyp:A (2.759) BS01 ADP ? GO:0003774 ... Q9BE39 38014327
    868457 8qyp:A (2.759) BS02 MG ? GO:0003774 ... Q9BE39 38014327
    868458 8qyq:A (2.61) BS01 ADP ? GO:0003774 ... Q9BE39 38014327
    868459 8qyq:A (2.61) BS02 BEF ? GO:0003774 ... Q9BE39 38014327
    868460 8qyq:A (2.61) BS03 MG ? GO:0003774 ... Q9BE39 38014327
    868461 8qyq:A (2.61) BS04 XB2 ? GO:0003774 ... Q9BE39 38014327
    868462 8qyq:B (2.61) BS01 ADP ? GO:0003774 ... Q9BE39 38014327
    868463 8qyq:B (2.61) BS02 BEF ? GO:0003774 ... Q9BE39 38014327
    868464 8qyq:B (2.61) BS03 XB2 ? GO:0003774 ... Q9BE39 38014327
    868465 8qyq:B (2.61) BS04 MG ? GO:0003774 ... Q9BE39 38014327
    868466 8qyr:B (1.8) BS01 XB2 ? GO:0003774 ... Q9BE39 38014327
    868467 8qyr:B (1.8) BS02 MG ? GO:0003774 ... Q9BE39 38014327
    868468 8qyr:B (1.8) BS03 ADP ? GO:0003774 ... Q9BE39 38014327
    868469 8qyr:B (1.8) BS04 BEF ? GO:0003774 ... Q9BE39 38014327
    868470 8qyt:A (1.69) BS01 FMN 1.4.3.5 GO:0004733 ... Q9NVS9 38284493
    868471 8qyt:A (1.69) BS02 PLP 1.4.3.5 GO:0004733 ... Q9NVS9 38284493
    868472 8qyu:A (1.96) BS01 ADP ? GO:0003774 ... Q9BE39 38014327
    868473 8qyu:A (1.96) BS02 MG ? GO:0003774 ... Q9BE39 38014327
    868474 8qyu:A (1.96) BS03 2OW ? GO:0003774 ... Q9BE39 38014327
    868475 8qyu:B (1.96) BS01 ADP ? GO:0003774 ... Q9BE39 38014327
    868476 8qyu:B (1.96) BS02 MG ? GO:0003774 ... Q9BE39 38014327
    868477 8qyu:B (1.96) BS03 2OW ? GO:0003774 ... Q9BE39 38014327
    868478 8qyv:A (3.5) BS01 dna N/A GO:0000776 ... P61830 39226902
    868479 8qyv:A (3.5) BS02 dna N/A GO:0000776 ... P61830 39226902
    868480 8qyv:B (3.5) BS01 dna N/A GO:0000776 ... P61830 39226902
    868481 8qyv:B (3.5) BS02 dna N/A GO:0000776 ... P61830 39226902
    868482 8qyv:C (3.5) BS01 dna N/A GO:0000786 ... P02309 39226902
    868483 8qyv:D (3.5) BS01 dna N/A GO:0000786 ... P02309 39226902
    868484 8qyv:D (3.5) BS02 dna N/A GO:0000786 ... P02309 39226902
    868485 8qyv:E (3.5) BS01 dna N/A GO:0000122 ... P04911 39226902
    868486 8qyv:E (3.5) BS02 dna N/A GO:0000122 ... P04911 39226902
    868487 8qyv:G (3.5) BS01 dna N/A GO:0000122 ... P02293 39226902
    868488 8qyv:G (3.5) BS02 dna N/A GO:0000122 ... P02293 39226902
    868489 8qyv:M (3.5) BS01 dna N/A GO:0000725 ... Q05471 39226902
    868490 8qyv:M (3.5) BS02 dna N/A GO:0000725 ... Q05471 39226902
    868491 8qyv:M (3.5) BS03 ADP N/A GO:0000725 ... Q05471 39226902
    868492 8qyv:M (3.5) BS04 BEF N/A GO:0000725 ... Q05471 39226902
    868493 8qyv:P (3.5) BS01 dna N/A GO:0000785 ... P38326 39226902
    868494 8qyv:P (3.5) BS02 dna N/A GO:0000785 ... P38326 39226902
    868495 8qyv:R (3.5) BS01 ADP N/A GO:0000785 ... Q12509 39226902
    868496 8qyv:S (3.5) BS01 dna N/A GO:0000785 ... Q03433 39226902
    868497 8qyv:S (3.5) BS02 dna N/A GO:0000785 ... Q03433 39226902
    868498 8qyv:S (3.5) BS03 ZN N/A GO:0000785 ... Q03433 39226902
    868499 8qyv:S (3.5) BS04 ZN N/A GO:0000785 ... Q03433 39226902
    868500 8qyv:T (3.5) BS01 ADP N/A GO:0000492 ... Q03940 39226902
    868501 8qyv:U (3.5) BS01 ADP N/A GO:0000492 ... Q12464 39226902
    868502 8qyv:V (3.5) BS01 ADP N/A GO:0000492 ... Q03940 39226902
    868503 8qyv:W (3.5) BS01 ADP N/A GO:0000492 ... Q12464 39226902
    868504 8qyv:X (3.5) BS01 ADP N/A GO:0000492 ... Q03940 39226902
    868505 8qyv:Y (3.5) BS01 ADP N/A GO:0000492 ... Q12464 39226902
    868506 8qyv:Y (3.5) BS02 MG N/A GO:0000492 ... Q12464 39226902
    868507 8qyv:Z (3.5) BS01 dna N/A GO:0000785 ... Q03388 39226902
    868508 8qyw:A (2.746) BS01 PO4 1.4.3.5 GO:0004733 ... Q9NVS9 38284493
    868509 8qyw:A (2.746) BS02 FMN 1.4.3.5 GO:0004733 ... Q9NVS9 38284493
    868510 8qyw:A (2.746) BS03 PO4 1.4.3.5 GO:0004733 ... Q9NVS9 38284493
    868511 8qyx:A1 (1.78) BS01 rna N/A GO:0000463 ... P18124 39658079
    868512 8qyx:A1 (1.78) BS02 rna N/A GO:0000463 ... P18124 39658079
    868513 8qyx:B1 (1.78) BS01 rna N/A GO:0000470 ... P62424 39658079
    868514 8qyx:B1 (1.78) BS02 rna N/A GO:0000470 ... P62424 39658079
    868515 8qyx:C1 (1.78) BS01 rna N/A GO:0002181 ... P32969 39658079
    868516 8qyx:D1 (1.78) BS01 rna N/A GO:0000027 ... Q96L21 39658079
    868517 8qyx:D1 (1.78) BS02 rna N/A GO:0000027 ... Q96L21 39658079
    868518 8qyx:D2 (1.78) BS01 rna N/A GO:0002181 ... P62917 39658079
    868519 8qyx:E1 (1.78) BS01 rna N/A GO:0000027 ... P62913 39658079
    868520 8qyx:E1 (1.78) BS02 rna N/A GO:0000027 ... P62913 39658079
    868521 8qyx:E2 (1.78) BS01 rna N/A GO:0002181 ... P39023 39658079
    868522 8qyx:F1 (1.78) BS01 rna N/A GO:0002181 ... P26373 39658079
    868523 8qyx:F1 (1.78) BS02 rna N/A GO:0002181 ... P26373 39658079
    868524 8qyx:F2 (1.78) BS01 rna N/A GO:0002181 ... P36578 39658079
    868525 8qyx:F2 (1.78) BS02 rna N/A GO:0002181 ... P36578 39658079
    868526 8qyx:F2 (1.78) BS03 PUT N/A GO:0002181 ... P36578 39658079
    868527 8qyx:G1 (1.78) BS01 rna N/A GO:0002181 ... P50914 39658079
    868528 8qyx:G2 (1.78) BS01 rna N/A GO:0000027 ... P46777 39658079
    868529 8qyx:G2 (1.78) BS02 rna N/A GO:0000027 ... P46777 39658079
    868530 8qyx:H1 (1.78) BS01 rna N/A GO:0002181 ... P61313 39658079
    868531 8qyx:H1 (1.78) BS02 rna N/A GO:0002181 ... P61313 39658079
    868532 8qyx:H1 (1.78) BS03 SPD N/A GO:0002181 ... P61313 39658079
    868533 8qyx:H2 (1.78) BS01 rna N/A GO:0002181 ... Q02878 39658079
    868534 8qyx:I1 (1.78) BS01 rna N/A GO:0002181 ... P40429 39658079
    868535 8qyx:I1 (1.78) BS02 SPD N/A GO:0002181 ... P40429 39658079
    868536 8qyx:J1 (1.78) BS01 rna N/A GO:0002181 ... P18621 39658079
    868537 8qyx:J1 (1.78) BS02 rna N/A GO:0002181 ... P18621 39658079
    868538 8qyx:K1 (1.78) BS01 rna N/A GO:0002181 ... Q07020 39658079
    868539 8qyx:L1 (1.78) BS01 rna N/A GO:0002181 ... P84098 39658079
    868540 8qyx:M1 (1.78) BS01 rna N/A GO:0002181 ... Q02543 39658079
    868541 8qyx:M1 (1.78) BS02 rna N/A GO:0002181 ... Q02543 39658079
    868542 8qyx:N1 (1.78) BS01 rna N/A GO:0001650 ... P46778 39658079
    868543 8qyx:N1 (1.78) BS02 rna N/A GO:0001650 ... P46778 39658079
    868544 8qyx:O1 (1.78) BS01 rna N/A GO:0002181 ... P35268 39658079
    868545 8qyx:P1 (1.78) BS01 rna N/A GO:0000122 ... P62829 39658079
    868546 8qyx:Q1 (1.78) BS01 rna N/A GO:0002181 ... P83731 39658079
    868547 8qyx:R1 (1.78) BS01 rna N/A GO:0002181 ... P62750 39658079
    868548 8qyx:R1 (1.78) BS02 rna N/A GO:0002181 ... P62750 39658079
    868549 8qyx:S1 (1.78) BS01 rna N/A GO:0002181 ... P61254 39658079
    868550 8qyx:S1 (1.78) BS02 rna N/A GO:0002181 ... P61254 39658079
    868551 8qyx:T1 (1.78) BS01 rna N/A GO:0002181 ... P61353 39658079
    868552 8qyx:U1 (1.78) BS01 rna N/A GO:0002181 ... P46776 39658079
    868553 8qyx:V1 (1.78) BS01 rna N/A GO:0002181 ... P47914 39658079
    868554 8qyx:W1 (1.78) BS01 rna N/A GO:0002181 ... P62888 39658079
    868555 8qyx:X1 (1.78) BS01 rna N/A GO:0002181 ... P62899 39658079
    868556 8qyx:Y1 (1.78) BS01 rna N/A GO:0002181 ... P62910 39658079
    868557 8qyx:Y1 (1.78) BS02 MG N/A GO:0002181 ... P62910 39658079
    868558 8qyx:Z1 (1.78) BS01 rna N/A GO:0002181 ... P18077 39658079
    868559 8qyx:Z1 (1.78) BS02 MG N/A GO:0002181 ... P18077 39658079
    868560 8qyx:a1 (1.78) BS01 rna N/A GO:0002181 ... P49207 39658079
    868561 8qyx:a1 (1.78) BS02 ZN N/A GO:0002181 ... P49207 39658079
    868562 8qyx:b1 (1.78) BS01 rna N/A GO:0000463 ... P42766 39658079
    868563 8qyx:b1 (1.78) BS02 rna N/A GO:0000463 ... P42766 39658079
    868564 8qyx:c1 (1.78) BS01 rna N/A GO:0002181 ... Q9Y3U8 39658079
    868565 8qyx:d1 (1.78) BS01 rna N/A GO:0000448 ... P61927 39658079
    868566 8qyx:d1 (1.78) BS02 rna N/A GO:0000448 ... P61927 39658079
    868567 8qyx:d1 (1.78) BS03 ZN N/A GO:0000448 ... P61927 39658079
    868568 8qyx:e1 (1.78) BS01 rna N/A GO:0002181 ... P63173 39658079
    868569 8qyx:f1 (1.78) BS01 rna N/A GO:0002181 ... P62891 39658079
    868570 8qyx:f1 (1.78) BS02 rna N/A GO:0002181 ... P62891 39658079
    868571 8qyx:g1 (1.78) BS01 rna N/A GO:0002181 ... P62987 39658079
    868572 8qyx:g1 (1.78) BS02 ZN N/A GO:0002181 ... P62987 39658079
    868573 8qyx:i1 (1.78) BS01 rna N/A GO:0002181 ... P83881 39658079
    868574 8qyx:i1 (1.78) BS02 ZN N/A GO:0002181 ... P83881 39658079
    868575 8qyx:j1 (1.78) BS01 rna N/A GO:0002181 ... P61513 39658079
    868576 8qyx:j1 (1.78) BS02 ZN N/A GO:0002181 ... P61513 39658079
    868577 8qyx:k1 (1.78) BS01 rna N/A GO:0002181 ... P46779 39658079
    868578 8qyy:A (2.56) BS01 CA N/A N/A A7ZI10 39662505
    868579 8qyy:A (2.56) BS02 CA N/A N/A A7ZI10 39662505
    868580 8qyy:B (2.56) BS01 CA N/A N/A A7ZI10 39662505
    868581 8qyy:B (2.56) BS02 CA N/A N/A A7ZI10 39662505
    868582 8qyy:C (2.56) BS01 CA N/A N/A A7ZI10 39662505
    868583 8qyy:C (2.56) BS02 CA N/A N/A A7ZI10 39662505
    868584 8qyy:D (2.56) BS01 CA N/A N/A A7ZI10 39662505
    868585 8qyy:D (2.56) BS02 CA N/A N/A A7ZI10 39662505
    868586 8qyy:E (2.56) BS01 CA N/A N/A A7ZI10 39662505
    868587 8qyy:E (2.56) BS02 CA N/A N/A A7ZI10 39662505
    868588 8qyz:A (3.0) BS01 GTP N/A GO:0003924 ... P32835 N/A
    868589 8qyz:A (3.0) BS02 MG N/A GO:0003924 ... P32835 N/A
    868590 8qyz:B (3.0) BS01 GTP N/A GO:0003924 ... P32835 N/A
    868591 8qyz:B (3.0) BS02 MG N/A GO:0003924 ... P32835 N/A
    868592 8qyz:C (3.0) BS01 peptide N/A GO:0000055 ... P30822 N/A
    868593 8qyz:D (3.0) BS01 peptide N/A GO:0000055 ... P30822 N/A
    868594 8qyz:E (3.0) BS01 GTP N/A GO:0003924 ... P32835 N/A
    868595 8qyz:E (3.0) BS02 MG N/A GO:0003924 ... P32835 N/A
    868596 8qyz:F (3.0) BS01 peptide N/A GO:0000055 ... P30822 N/A
    868597 8qyz:G (3.0) BS01 GTP N/A GO:0003924 ... P32835 N/A
    868598 8qyz:G (3.0) BS02 MG N/A GO:0003924 ... P32835 N/A
    868599 8qyz:H (3.0) BS01 peptide N/A GO:0000055 ... P30822 N/A
    868600 8qz0:A (3.8) BS01 dna N/A GO:0000776 ... P61830 39226902

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).