SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    868401 8rl2:LO (2.84) BS01 rna N/A N/A P40429 N/A
    868402 8rl2:LP (2.84) BS01 rna N/A N/A P18621 N/A
    868403 8rl2:LP (2.84) BS02 rna N/A N/A P18621 N/A
    868404 8rl2:LQ (2.84) BS01 rna N/A N/A Q07020 N/A
    868405 8rl2:LR (2.84) BS01 rna N/A N/A P84098 N/A
    868406 8rl2:LS (2.84) BS01 rna N/A N/A Q02543 N/A
    868407 8rl2:LT (2.84) BS01 rna N/A N/A P46778 N/A
    868408 8rl2:LU (2.84) BS01 rna N/A N/A P35268 N/A
    868409 8rl2:LV (2.84) BS01 rna N/A N/A P62829 N/A
    868410 8rl2:LX (2.84) BS01 rna N/A N/A P62750 N/A
    868411 8rl2:LX (2.84) BS02 rna N/A N/A P62750 N/A
    868412 8rl2:LY (2.84) BS01 rna N/A N/A P61254 N/A
    868413 8rl2:LY (2.84) BS02 rna N/A N/A P61254 N/A
    868414 8rl2:LZ (2.84) BS01 rna N/A N/A P61353 N/A
    868415 8rl2:La (2.84) BS01 rna N/A N/A P46776 N/A
    868416 8rl2:Lc (2.84) BS01 rna N/A N/A P62888 N/A
    868417 8rl2:Ld (2.84) BS01 rna N/A N/A P62899 N/A
    868418 8rl2:Le (2.84) BS01 rna N/A N/A P62910 N/A
    868419 8rl2:Lf (2.84) BS01 rna N/A N/A P18077 N/A
    868420 8rl2:Lg (2.84) BS01 rna N/A N/A P49207 N/A
    868421 8rl2:Lg (2.84) BS02 ZN N/A N/A P49207 N/A
    868422 8rl2:Lh (2.84) BS01 rna N/A N/A P42766 N/A
    868423 8rl2:Lh (2.84) BS02 rna N/A N/A P42766 N/A
    868424 8rl2:Li (2.84) BS01 rna N/A N/A Q9Y3U8 N/A
    868425 8rl2:Lj (2.84) BS01 rna N/A N/A P61927 N/A
    868426 8rl2:Lj (2.84) BS02 rna N/A N/A P61927 N/A
    868427 8rl2:Lj (2.84) BS03 ZN N/A N/A P61927 N/A
    868428 8rl2:Lk (2.84) BS01 rna N/A N/A P63173 N/A
    868429 8rl2:Ll (2.84) BS01 rna N/A N/A P62891 N/A
    868430 8rl2:Ll (2.84) BS02 rna N/A N/A P62891 N/A
    868431 8rl2:Lp (2.84) BS01 rna N/A N/A P61513 N/A
    868432 8rl2:Lp (2.84) BS02 ZN N/A N/A P61513 N/A
    868433 8rl2:Lr (2.84) BS01 rna N/A N/A P46779 N/A
    868434 8rl2:Lt (2.84) BS01 rna N/A N/A P30050 N/A
    868435 8rl5:A (3.79) BS01 ZN N/A N/A O94762 N/A
    868436 8rl5:B (3.79) BS01 ZN N/A N/A O94762 N/A
    868437 8rl6:A (3.18) BS01 ZN N/A N/A O94762 N/A
    868438 8rl9:A (3.22) BS01 ZN N/A N/A O94762 N/A
    868439 8rla:A (3.03) BS01 ZN N/A N/A O94762 N/A
    868440 8rlk:A (2.0) BS01 MER N/A N/A Q9HT32 39097051
    868441 8rlk:B (2.0) BS01 MER N/A N/A Q9HT32 39097051
    868442 8rlk:C (2.0) BS01 MER N/A N/A Q9HT32 39097051
    868443 8rlk:C (2.0) BS02 MG N/A N/A Q9HT32 39097051
    868444 8rlk:D (2.0) BS01 MER N/A N/A Q9HT32 39097051
    868445 8rln:A (2.43) BS01 CLR N/A GO:0001609 ... P0ABE7
    P29274
    38751633
    868446 8rln:A (2.43) BS02 CLR N/A GO:0001609 ... P0ABE7
    P29274
    38751633
    868447 8rln:A (2.43) BS03 CLR N/A GO:0001609 ... P0ABE7
    P29274
    38751633
    868448 8rln:A (2.43) BS04 A1H1S N/A GO:0001609 ... P0ABE7
    P29274
    38751633
    868449 8rlo:AAA (1.55) BS01 ZN N/A N/A P00915 N/A
    868450 8rlo:AAA (1.55) BS02 A1H1P N/A N/A P00915 N/A
    868451 8rlo:BBB (1.55) BS01 ZN N/A N/A P00915 N/A
    868452 8rlo:BBB (1.55) BS02 A1H1P N/A N/A P00915 N/A
    868453 8rlp:AAA (1.342) BS01 ZN N/A N/A P00918 N/A
    868454 8rlp:AAA (1.342) BS02 A1H11 N/A N/A P00918 N/A
    868455 8rlq:AAA (1.5) BS01 A1H11 N/A N/A P00918 N/A
    868456 8rlq:AAA (1.5) BS02 ZN N/A N/A P00918 N/A
    868457 8rlt:A (2.25) BS01 peptide N/A N/A P13747 39578466
    868458 8rlt:D (2.25) BS01 peptide N/A GO:0002250 ... A0A075B6T6
    P0DTU3
    39578466
    868459 8rlt:E (2.25) BS01 peptide N/A N/A A0A0K0K1A5
    P0DTU4
    39578466
    868460 8rlt:F (2.25) BS01 peptide N/A N/A P13747 39578466
    868461 8rlt:I (2.25) BS01 peptide N/A GO:0002250 ... A0A075B6T6
    P0DTU3
    39578466
    868462 8rlt:J (2.25) BS01 peptide N/A N/A A0A0K0K1A5
    P0DTU4
    39578466
    868463 8rlu:A (2.35) BS01 peptide N/A N/A P13747 39578466
    868464 8rlu:D (2.35) BS01 peptide N/A GO:0002250 ... A0A075B6T6
    P0DTU3
    39578466
    868465 8rlu:E (2.35) BS01 peptide N/A N/A A0A0K0K1A5
    P0DTU4
    39578466
    868466 8rlu:F (2.35) BS01 peptide N/A N/A P13747 39578466
    868467 8rlu:I (2.35) BS01 peptide N/A GO:0002250 ... A0A075B6T6
    P0DTU3
    39578466
    868468 8rlu:J (2.35) BS01 peptide N/A N/A A0A0K0K1A5
    P0DTU4
    39578466
    868469 8rlv:A (2.609) BS01 peptide N/A N/A P13747 39578466
    868470 8rlv:D (2.609) BS01 peptide N/A GO:0002250 ... A0A075B6T6
    P0DTU3
    39578466
    868471 8rlv:E (2.609) BS01 peptide N/A N/A A0A0K0K1A5
    P0DTU4
    39578466
    868472 8rlv:F (2.609) BS01 peptide N/A N/A P13747 39578466
    868473 8rlv:I (2.609) BS01 peptide N/A GO:0002250 ... A0A075B6T6
    P0DTU3
    39578466
    868474 8rlv:J (2.609) BS01 peptide N/A N/A A0A0K0K1A5
    P0DTU4
    39578466
    868475 8rly:A (1.9) BS01 ZN N/A N/A P0A6C1 39655415
    868476 8rly:A (1.9) BS02 FE2 N/A N/A P0A6C1 39655415
    868477 8rly:A (1.9) BS03 ZN N/A N/A P0A6C1 39655415
    868478 8rly:B (1.9) BS01 ZN N/A N/A P0A6C1 39655415
    868479 8rly:B (1.9) BS02 FE2 N/A N/A P0A6C1 39655415
    868480 8rly:B (1.9) BS03 ZN N/A N/A P0A6C1 39655415
    868481 8rly:C (1.9) BS01 ZN N/A N/A P0A6C1 39655415
    868482 8rly:C (1.9) BS02 FE2 N/A N/A P0A6C1 39655415
    868483 8rly:C (1.9) BS03 ZN N/A N/A P0A6C1 39655415
    868484 8rly:D (1.9) BS01 ZN N/A N/A P0A6C1 39655415
    868485 8rly:D (1.9) BS02 FE2 N/A N/A P0A6C1 39655415
    868486 8rly:D (1.9) BS03 ZN N/A N/A P0A6C1 39655415
    868487 8rly:E (1.9) BS01 ZN N/A N/A P0A6C1 39655415
    868488 8rly:E (1.9) BS02 FE2 N/A N/A P0A6C1 39655415
    868489 8rly:E (1.9) BS03 ZN N/A N/A P0A6C1 39655415
    868490 8rlz:A (-1.00) BS01 ZN N/A N/A N/A 39454004
    868491 8rm3:A (2.22) BS01 C8E N/A N/A Q9I116 N/A
    868492 8rm3:A (2.22) BS02 A1H1T N/A N/A Q9I116 N/A
    868493 8rm5:21 (6.9) BS01 rna ? GO:0000243 ... P62314 38778104
    868494 8rm5:22 (6.9) BS01 rna ? GO:0000245 ... P62316 38778104
    868495 8rm5:23 (6.9) BS01 rna ? GO:0000243 ... P62318 38778104
    868496 8rm5:2B (6.9) BS01 rna ? GO:0000398 ... P08579 38778104
    868497 8rm5:2b (6.9) BS01 rna ? GO:0000387 ... P14678 38778104
    868498 8rm5:2e (6.9) BS01 rna ? GO:0000245 ... P62304 38778104
    868499 8rm5:2f (6.9) BS01 rna ? GO:0000387 ... P62306 38778104
    868500 8rm5:2g (6.9) BS01 rna ? GO:0000245 ... P62308 38778104
    868501 8rm5:41 (6.9) BS01 rna ? GO:0000243 ... P62314 38778104
    868502 8rm5:42 (6.9) BS01 rna ? GO:0000245 ... P62316 38778104
    868503 8rm5:43 (6.9) BS01 rna ? GO:0000243 ... P62318 38778104
    868504 8rm5:4e (6.9) BS01 rna ? GO:0000245 ... P62304 38778104
    868505 8rm5:4f (6.9) BS01 rna ? GO:0000387 ... P62306 38778104
    868506 8rm5:4g (6.9) BS01 rna ? GO:0000245 ... P62308 38778104
    868507 8rm5:51 (6.9) BS01 rna ? GO:0000243 ... P62314 38778104
    868508 8rm5:52 (6.9) BS01 rna ? GO:0000245 ... P62316 38778104
    868509 8rm5:5b (6.9) BS01 rna ? GO:0000387 ... P14678 38778104
    868510 8rm5:5e (6.9) BS01 rna ? GO:0000245 ... P62304 38778104
    868511 8rm5:5f (6.9) BS01 rna ? GO:0000387 ... P62306 38778104
    868512 8rm5:5g (6.9) BS01 rna ? GO:0000245 ... P62308 38778104
    868513 8rm5:63 (6.9) BS01 rna ? GO:0000398 ... P62310 38778104
    868514 8rm5:68 (6.9) BS01 rna ? GO:0000398 ... O95777 38778104
    868515 8rm5:7 (6.9) BS01 rna ? GO:0000389 ... Q15459 38778104
    868516 8rm5:8 (6.9) BS01 rna ? GO:0000245 ... Q15428 38778104
    868517 8rm5:9 (6.9) BS01 rna ? GO:0000375 ... Q12874 38778104
    868518 8rm5:A (6.9) BS01 rna ? GO:0000244 ... Q6P2Q9 38778104
    868519 8rm5:A (6.9) BS02 rna ? GO:0000244 ... Q6P2Q9 38778104
    868520 8rm5:A (6.9) BS03 rna ? GO:0000244 ... Q6P2Q9 38778104
    868521 8rm5:B1 (6.9) BS01 rna ? GO:0000245 ... O75533 38778104
    868522 8rm5:B1 (6.9) BS02 rna ? GO:0000245 ... O75533 38778104
    868523 8rm5:B6 (6.9) BS01 rna ? GO:0000398 ... Q9Y3B4 38778104
    868524 8rm5:D (6.9) BS01 rna ? GO:0000245 ... P83876 38778104
    868525 8rm5:E (6.9) BS01 rna ? GO:0000375 ... Q96DI7 38778104
    868526 8rm5:F (6.9) BS01 rna ? GO:0000375 ... O43172 38778104
    868527 8rm5:J (6.9) BS01 rna ? GO:0000244 ... O43395 38778104
    868528 8rm5:L (6.9) BS01 rna ? GO:0000244 ... Q8WWY3 38778104
    868529 8rm5:L (6.9) BS02 rna ? GO:0000244 ... Q8WWY3 38778104
    868530 8rm5:M (6.9) BS01 rna ? GO:0000398 ... P55769 38778104
    868531 8rm5:N (6.9) BS01 rna ? GO:0000244 ... O94906 38778104
    868532 8rm6:A (2.05) BS01 dna ? GO:0003700 ... P10275 38604378
    868533 8rm6:A (2.05) BS02 dna ? GO:0003700 ... P10275 38604378
    868534 8rm6:A (2.05) BS03 ZN ? GO:0003700 ... P10275 38604378
    868535 8rm6:A (2.05) BS04 ZN ? GO:0003700 ... P10275 38604378
    868536 8rm6:B (2.05) BS01 dna ? GO:0003700 ... P10275 38604378
    868537 8rm6:B (2.05) BS02 dna ? GO:0003700 ... P10275 38604378
    868538 8rm6:B (2.05) BS03 ZN ? GO:0003700 ... P10275 38604378
    868539 8rm6:B (2.05) BS04 ZN ? GO:0003700 ... P10275 38604378
    868540 8rm7:A (2.25) BS01 dna ? GO:0003700 ... P10275 38604378
    868541 8rm7:A (2.25) BS02 dna ? GO:0003700 ... P10275 38604378
    868542 8rm7:A (2.25) BS03 ZN ? GO:0003700 ... P10275 38604378
    868543 8rm7:A (2.25) BS04 ZN ? GO:0003700 ... P10275 38604378
    868544 8rm7:B (2.25) BS01 dna ? GO:0003700 ... P10275 38604378
    868545 8rm7:B (2.25) BS02 dna ? GO:0003700 ... P10275 38604378
    868546 8rm7:B (2.25) BS03 ZN ? GO:0003700 ... P10275 38604378
    868547 8rm7:B (2.25) BS04 ZN ? GO:0003700 ... P10275 38604378
    868548 8rma:A (0.83) BS01 A1H1U N/A N/A G3G192 N/A
    868549 8rmc:B (2.26) BS01 8Q1 N/A GO:0005515 ... Q9HD34 39632806
    868550 8rmc:D (2.26) BS01 FE2 N/A N/A Q9H1K1 39632806
    868551 8rmc:F (2.26) BS01 8Q1 N/A GO:0005515 ... Q9HD34 39632806
    868552 8rmc:H (2.26) BS01 FE2 N/A N/A Q9H1K1 39632806
    868553 8rmc:I (2.26) BS01 FES N/A N/A Q6P4F2 39632806
    868554 8rmd:B (2.52) BS01 8Q1 N/A GO:0005515 ... Q9HD34 39632806
    868555 8rmd:D (2.52) BS01 FE2 N/A N/A Q9H1K1 39632806
    868556 8rmd:F (2.52) BS01 8Q1 N/A GO:0005515 ... Q9HD34 39632806
    868557 8rmd:H (2.52) BS01 FE2 N/A N/A Q9H1K1 39632806
    868558 8rmd:I (2.52) BS01 FES N/A N/A Q6P4F2 39632806
    868559 8rme:B (2.49) BS01 8Q1 N/A GO:0005515 ... Q9HD34 39632806
    868560 8rme:D (2.49) BS01 FE2 N/A N/A Q9H1K1 39632806
    868561 8rme:F (2.49) BS01 8Q1 N/A GO:0005515 ... Q9HD34 39632806
    868562 8rme:H (2.49) BS01 FE2 N/A N/A Q9H1K1 39632806
    868563 8rmf:B (2.33) BS01 8Q1 N/A GO:0005515 ... Q9HD34 39632806
    868564 8rmf:D (2.33) BS01 FE2 N/A N/A Q9H1K1 39632806
    868565 8rmf:F (2.33) BS01 8Q1 N/A GO:0005515 ... Q9HD34 39632806
    868566 8rmf:H (2.33) BS01 FE2 N/A N/A Q9H1K1 39632806
    868567 8rmf:I (2.33) BS01 FES N/A N/A Q6P4F2 39632806
    868568 8rmg:B (2.46) BS01 8Q1 N/A GO:0005515 ... Q9HD34 39632806
    868569 8rmg:D (2.46) BS01 FE2 N/A N/A Q9H1K1 39632806
    868570 8rmg:F (2.46) BS01 8Q1 N/A GO:0005515 ... Q9HD34 39632806
    868571 8rmg:H (2.46) BS01 FE2 N/A N/A Q9H1K1 39632806
    868572 8rmg:I (2.46) BS01 FES N/A N/A Q6P4F2 39632806
    868573 8rmi:A (2.48) BS01 A1H1Z N/A N/A Q9I116 39173538
    868574 8rmj:A (2.79) BS01 MAN N/A GO:0030215 ... A0A0B4KG38 39042673
    868575 8rmj:A (2.79) BS02 GU4 N/A GO:0030215 ... A0A0B4KG38 39042673
    868576 8rmj:A (2.79) BS03 YYJ N/A GO:0030215 ... A0A0B4KG38 39042673
    868577 8rmj:A (2.79) BS04 YYJ N/A GO:0030215 ... A0A0B4KG38 39042673
    868578 8rmo:H (1.163) BS01 peptide N/A N/A N/A 38852931
    868579 8rmo:L (1.163) BS01 peptide N/A N/A N/A 38852931
    868580 8rmq:B (2.54) BS01 MG N/A GO:0000166 ... S5ME50 39160148
    868581 8rmq:B (2.54) BS02 MG N/A GO:0000166 ... S5ME50 39160148
    868582 8rmr:B (3.25) BS01 MG N/A GO:0000166 ... S5ME50 39160148
    868583 8rms:B (3.21) BS01 MG N/A GO:0000166 ... S5ME50 39160148
    868584 8rmt:A (1.25) BS01 A1H1W N/A N/A P17931 N/A
    868585 8rmu:A (1.2) BS01 A1H1Y N/A N/A P17931 N/A
    868586 8rmv:A (1.35) BS01 A1H1X N/A N/A P17931 N/A
    868587 8rn1:A (3.64) BS01 rna N/A GO:0003723 ... Q5V8Z9 39160148
    868588 8rn1:B (3.64) BS01 rna N/A GO:0000166 ... Q5V8Y6 39160148
    868589 8rn3:A (2.78) BS01 MG N/A GO:0003723 ... Q5V8Z9 39160148
    868590 8rn4:A (2.87) BS01 peptide N/A GO:0003723 ... Q5V8Z9 39160148
    868591 8rn4:B (2.87) BS01 peptide N/A GO:0000166 ... Q5V8Y6 39160148
    868592 8rn4:B (2.87) BS02 MG N/A GO:0000166 ... Q5V8Y6 39160148
    868593 8rn4:B (2.87) BS03 MG N/A GO:0000166 ... Q5V8Y6 39160148
    868594 8rn4:D (2.87) BS01 peptide N/A GO:0003723 ... Q5V8Z9 39160148
    868595 8rn5:A (2.88) BS01 peptide N/A GO:0003723 ... Q5V8Z9 39160148
    868596 8rn5:A (2.88) BS02 peptide N/A GO:0003723 ... Q5V8Z9 39160148
    868597 8rn5:B (2.88) BS01 peptide N/A GO:0000166 ... Q5V8Y6 39160148
    868598 8rn5:B (2.88) BS02 peptide N/A GO:0000166 ... Q5V8Y6 39160148
    868599 8rn5:B (2.88) BS03 MG N/A GO:0000166 ... Q5V8Y6 39160148
    868600 8rn7:A (3.09) BS01 peptide N/A GO:0003723 ... Q5V8Z9 39160148

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).