SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    868601 8qz0:A (3.8) BS02 dna N/A GO:0000776 ... P61830 39226902
    868602 8qz0:B (3.8) BS01 dna N/A GO:0000776 ... P61830 39226902
    868603 8qz0:B (3.8) BS02 dna N/A GO:0000776 ... P61830 39226902
    868604 8qz0:C (3.8) BS01 dna N/A GO:0000786 ... P02309 39226902
    868605 8qz0:C (3.8) BS02 dna N/A GO:0000786 ... P02309 39226902
    868606 8qz0:D (3.8) BS01 dna N/A GO:0000786 ... P02309 39226902
    868607 8qz0:D (3.8) BS02 dna N/A GO:0000786 ... P02309 39226902
    868608 8qz0:E (3.8) BS01 dna N/A GO:0000122 ... P04911 39226902
    868609 8qz0:E (3.8) BS02 dna N/A GO:0000122 ... P04911 39226902
    868610 8qz0:G (3.8) BS01 dna N/A GO:0000122 ... P02293 39226902
    868611 8qz0:G (3.8) BS02 dna N/A GO:0000122 ... P02293 39226902
    868612 8qz0:M (3.8) BS01 dna N/A GO:0000725 ... Q05471 39226902
    868613 8qz0:M (3.8) BS02 dna N/A GO:0000725 ... Q05471 39226902
    868614 8qz0:M (3.8) BS03 ADP N/A GO:0000725 ... Q05471 39226902
    868615 8qz0:M (3.8) BS04 BEF N/A GO:0000725 ... Q05471 39226902
    868616 8qz0:M (3.8) BS05 MG N/A GO:0000725 ... Q05471 39226902
    868617 8qz0:R (3.8) BS01 ADP N/A GO:0000785 ... Q12509 39226902
    868618 8qz0:R (3.8) BS02 BEF N/A GO:0000785 ... Q12509 39226902
    868619 8qz0:S (3.8) BS01 ZN N/A GO:0000785 ... Q03433 39226902
    868620 8qz0:S (3.8) BS02 ZN N/A GO:0000785 ... Q03433 39226902
    868621 8qz0:T (3.8) BS01 ADP N/A GO:0000492 ... Q03940 39226902
    868622 8qz0:U (3.8) BS01 ADP N/A GO:0000492 ... Q12464 39226902
    868623 8qz0:V (3.8) BS01 ADP N/A GO:0000492 ... Q03940 39226902
    868624 8qz0:W (3.8) BS01 ADP N/A GO:0000492 ... Q12464 39226902
    868625 8qz0:X (3.8) BS01 ADP N/A GO:0000492 ... Q03940 39226902
    868626 8qz0:Y (3.8) BS01 ADP N/A GO:0000492 ... Q12464 39226902
    868627 8qz0:Y (3.8) BS02 MG N/A GO:0000492 ... Q12464 39226902
    868628 8qz0:Z (3.8) BS01 dna N/A GO:0000785 ... Q03388 39226902
    868629 8qz1:A (3.588) BS01 K ? GO:0005267 ... P57789 38755204
    868630 8qz1:A (3.588) BS02 K ? GO:0005267 ... P57789 38755204
    868631 8qz1:A (3.588) BS03 K ? GO:0005267 ... P57789 38755204
    868632 8qz1:B (3.588) BS01 K ? GO:0005267 ... P57789 38755204
    868633 8qz1:B (3.588) BS02 K ? GO:0005267 ... P57789 38755204
    868634 8qz1:B (3.588) BS03 K ? GO:0005267 ... P57789 38755204
    868635 8qz2:A (3.5) BS01 K ? GO:0005267 ... P57789 38755204
    868636 8qz2:A (3.5) BS02 K ? GO:0005267 ... P57789 38755204
    868637 8qz2:A (3.5) BS03 K ? GO:0005267 ... P57789 38755204
    868638 8qz2:A (3.5) BS04 K ? GO:0005267 ... P57789 38755204
    868639 8qz2:B (3.5) BS01 K ? GO:0005267 ... P57789 38755204
    868640 8qz2:B (3.5) BS02 K ? GO:0005267 ... P57789 38755204
    868641 8qz2:B (3.5) BS03 K ? GO:0005267 ... P57789 38755204
    868642 8qz2:B (3.5) BS04 K ? GO:0005267 ... P57789 38755204
    868643 8qz3:A (2.4) BS01 K ? GO:0005267 ... P57789 38755204
    868644 8qz3:A (2.4) BS02 K ? GO:0005267 ... P57789 38755204
    868645 8qz3:A (2.4) BS03 K ? GO:0005267 ... P57789 38755204
    868646 8qz3:A (2.4) BS04 K ? GO:0005267 ... P57789 38755204
    868647 8qz3:A (2.4) BS05 K ? GO:0005267 ... P57789 38755204
    868648 8qz3:B (2.4) BS01 K ? GO:0005267 ... P57789 38755204
    868649 8qz3:B (2.4) BS02 K ? GO:0005267 ... P57789 38755204
    868650 8qz3:B (2.4) BS03 K ? GO:0005267 ... P57789 38755204
    868651 8qz3:B (2.4) BS04 K ? GO:0005267 ... P57789 38755204
    868652 8qz4:A (3.2) BS01 Y01 ? GO:0005267 ... P57789 38755204
    868653 8qz4:A (3.2) BS02 Y01 ? GO:0005267 ... P57789 38755204
    868654 8qz4:A (3.2) BS03 Y01 ? GO:0005267 ... P57789 38755204
    868655 8qz4:B (3.2) BS01 Y01 ? GO:0005267 ... P57789 38755204
    868656 8qz4:B (3.2) BS02 Y01 ? GO:0005267 ... P57789 38755204
    868657 8qz4:B (3.2) BS03 Y01 ? GO:0005267 ... P57789 38755204
    868658 8qz7:A (3.0) BS01 XBX N/A GO:0003677 ... Q6ZMG9 39528795
    868659 8qz7:C (3.0) BS01 XBX N/A GO:0003677 ... Q6ZMG9 39528795
    868660 8qz8:A (3.13) BS01 rna ? GO:0046872 ... A0A142I7Z3 38066000
    868661 8qz8:A (3.13) BS02 ZN ? GO:0046872 ... A0A142I7Z3 38066000
    868662 8qz8:B (3.13) BS01 rna ? GO:0001172 ... A0A1Y9SHW4 38066000
    868663 8qz8:B (3.13) BS02 rna ? GO:0001172 ... A0A1Y9SHW4 38066000
    868664 8qz8:B (3.13) BS03 G2P ? GO:0001172 ... A0A1Y9SHW4 38066000
    868665 8qz8:B (3.13) BS04 MG ? GO:0001172 ... A0A1Y9SHW4 38066000
    868666 8qz8:C (3.13) BS01 rna ? GO:0046872 ... A0A7G3S745 38066000
    868667 8qz8:C (3.13) BS02 ZN ? GO:0046872 ... A0A7G3S745 38066000
    868668 8qzb:A (1.16) BS01 NAD N/A GO:0016616 ... Q2VEQ7 40770045
    868669 8qzb:A (1.16) BS02 7N5 N/A GO:0016616 ... Q2VEQ7 40770045
    868670 8qzb:B (1.16) BS01 NAD N/A GO:0016616 ... Q2VEQ7 40770045
    868671 8qzb:B (1.16) BS02 7N5 N/A GO:0016616 ... Q2VEQ7 40770045
    868672 8qzb:C (1.16) BS01 NAD N/A GO:0016616 ... Q2VEQ7 40770045
    868673 8qzb:C (1.16) BS02 7N5 N/A GO:0016616 ... Q2VEQ7 40770045
    868674 8qzb:D (1.16) BS01 NAD N/A GO:0016616 ... Q2VEQ7 40770045
    868675 8qzb:D (1.16) BS02 7N5 N/A GO:0016616 ... Q2VEQ7 40770045
    868676 8qzc:A (3.29) BS01 CA ? GO:0005102 ... Q8BHY3 37984335
    868677 8qzc:A (3.29) BS02 CA ? GO:0005102 ... Q8BHY3 37984335
    868678 8qzc:B (3.29) BS01 CA ? GO:0005102 ... Q8BHY3 37984335
    868679 8qzc:B (3.29) BS02 CA ? GO:0005102 ... Q8BHY3 37984335
    868680 8qzd:A (1.3) BS01 XDZ 3.1.3.76
    3.3.2.10
    GO:0003824 ... P34913 38470246
    868681 8qze:A (1.87) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    868682 8qze:B (1.87) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    868683 8qzf:A (1.8) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    868684 8qzf:B (1.8) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    868685 8qzi:A (2.5) BS01 COA N/A GO:0000287 ... O33336 N/A
    868686 8qzi:A (2.5) BS02 MN N/A GO:0000287 ... O33336 N/A
    868687 8qzi:B (2.5) BS01 COA N/A GO:0000287 ... O33336 N/A
    868688 8qzi:B (2.5) BS02 MN N/A GO:0000287 ... O33336 N/A
    868689 8qzi:C (2.5) BS01 COA N/A GO:0000287 ... O33336 N/A
    868690 8qzi:C (2.5) BS02 MN N/A GO:0000287 ... O33336 N/A
    868691 8qzi:D (2.5) BS01 COA N/A GO:0000287 ... O33336 N/A
    868692 8qzi:D (2.5) BS02 MN N/A GO:0000287 ... O33336 N/A
    868693 8qzi:E (2.5) BS01 COA N/A GO:0031177 ... P96202 N/A
    868694 8qzj:A (2.0) BS01 A3P N/A GO:0000287 ... O33336 N/A
    868695 8qzj:A (2.0) BS02 MN N/A GO:0000287 ... O33336 N/A
    868696 8qzj:B (2.0) BS01 A3P N/A GO:0000287 ... O33336 N/A
    868697 8qzj:C (2.0) BS01 A3P N/A GO:0000287 ... O33336 N/A
    868698 8qzj:D (2.0) BS01 A3P N/A GO:0000287 ... O33336 N/A
    868699 8qzj:D (2.0) BS02 MN N/A GO:0000287 ... O33336 N/A
    868700 8qzl:A (3.42) BS01 WQW N/A GO:0005886 ... W1DJX9 N/A
    868701 8qzl:C (3.42) BS01 WQW N/A GO:0005886 ... W1DJX9 N/A
    868702 8qzm:A (3.1) BS01 dna N/A GO:0000786 ... A0A7K7T3V7 39528729
    868703 8qzm:A (3.1) BS02 dna N/A GO:0000786 ... A0A7K7T3V7 39528729
    868704 8qzm:B (3.1) BS01 dna N/A GO:0000781 ... P62805 39528729
    868705 8qzm:B (3.1) BS02 dna N/A GO:0000781 ... P62805 39528729
    868706 8qzm:C (3.1) BS01 dna N/A GO:0000786 ... P0C0S8 39528729
    868707 8qzm:C (3.1) BS02 dna N/A GO:0000786 ... P0C0S8 39528729
    868708 8qzm:D (3.1) BS01 dna N/A GO:0000786 ... P62807 39528729
    868709 8qzm:D (3.1) BS02 dna N/A GO:0000786 ... P62807 39528729
    868710 8qzm:E (3.1) BS01 dna N/A GO:0000786 ... A0A7K7T3V7 39528729
    868711 8qzm:E (3.1) BS02 dna N/A GO:0000786 ... A0A7K7T3V7 39528729
    868712 8qzm:E (3.1) BS03 peptide N/A GO:0000786 ... A0A7K7T3V7 39528729
    868713 8qzm:F (3.1) BS01 dna N/A GO:0000781 ... P62805 39528729
    868714 8qzm:F (3.1) BS02 dna N/A GO:0000781 ... P62805 39528729
    868715 8qzm:G (3.1) BS01 dna N/A GO:0000786 ... P0C0S8 39528729
    868716 8qzm:G (3.1) BS02 dna N/A GO:0000786 ... P0C0S8 39528729
    868717 8qzm:G (3.1) BS03 peptide N/A GO:0000786 ... P0C0S8 39528729
    868718 8qzm:H (3.1) BS01 dna N/A GO:0000786 ... P62807 39528729
    868719 8qzm:H (3.1) BS02 dna N/A GO:0000786 ... P62807 39528729
    868720 8qzm:H (3.1) BS03 peptide N/A GO:0000786 ... P62807 39528729
    868721 8qzq:A (3.23) BS01 XE9 N/A GO:0005515 ... P31224 N/A
    868722 8qzq:B (3.23) BS01 WR6 N/A GO:0005515 ... P31224 N/A
    868723 8qzs:21 (4.1) BS01 rna ? GO:0000243 ... P62314 38778104
    868724 8qzs:22 (4.1) BS01 rna ? GO:0000244 ... P62316 38778104
    868725 8qzs:23 (4.1) BS01 rna ? GO:0000243 ... P62318 38778104
    868726 8qzs:2B (4.1) BS01 rna ? GO:0000387 ... P08579 38778104
    868727 8qzs:2b (4.1) BS01 rna ? GO:0000244 ... P14678 38778104
    868728 8qzs:2e (4.1) BS01 rna ? GO:0000244 ... P62304 38778104
    868729 8qzs:2f (4.1) BS01 rna ? GO:0000244 ... P62306 38778104
    868730 8qzs:2g (4.1) BS01 rna ? GO:0000244 ... P62308 38778104
    868731 8qzs:42 (4.1) BS01 rna ? GO:0000244 ... P62316 38778104
    868732 8qzs:43 (4.1) BS01 rna ? GO:0000243 ... P62318 38778104
    868733 8qzs:4e (4.1) BS01 rna ? GO:0000244 ... P62304 38778104
    868734 8qzs:4f (4.1) BS01 rna ? GO:0000244 ... P62306 38778104
    868735 8qzs:4g (4.1) BS01 rna ? GO:0000244 ... P62308 38778104
    868736 8qzs:51 (4.1) BS01 rna ? GO:0000243 ... P62314 38778104
    868737 8qzs:52 (4.1) BS01 rna ? GO:0000244 ... P62316 38778104
    868738 8qzs:53 (4.1) BS01 rna ? GO:0000243 ... P62318 38778104
    868739 8qzs:5b (4.1) BS01 rna ? GO:0000244 ... P14678 38778104
    868740 8qzs:5e (4.1) BS01 rna ? GO:0000244 ... P62304 38778104
    868741 8qzs:5f (4.1) BS01 rna ? GO:0000244 ... P62306 38778104
    868742 8qzs:5g (4.1) BS01 rna ? GO:0000244 ... P62308 38778104
    868743 8qzs:7 (4.1) BS01 rna ? GO:0000387 ... Q15459 38778104
    868744 8qzs:A (4.1) BS01 rna ? GO:0000244 ... Q6P2Q9 38778104
    868745 8qzs:A (4.1) BS02 rna ? GO:0000244 ... Q6P2Q9 38778104
    868746 8qzs:A (4.1) BS03 rna ? GO:0000244 ... Q6P2Q9 38778104
    868747 8qzs:B (4.1) BS01 rna 3.6.4.13 GO:0000244 ... O75643 38778104
    868748 8qzs:B1 (4.1) BS01 rna ? GO:0000245 ... O75533 38778104
    868749 8qzs:B1 (4.1) BS02 rna ? GO:0000245 ... O75533 38778104
    868750 8qzs:B6 (4.1) BS01 rna ? GO:0000387 ... Q9Y3B4 38778104
    868751 8qzs:D (4.1) BS01 rna ? GO:0000245 ... P83876 38778104
    868752 8qzs:D (4.1) BS02 rna ? GO:0000245 ... P83876 38778104
    868753 8qzs:F (4.1) BS01 rna ? GO:0000244 ... O43172 38778104
    868754 8qzs:J (4.1) BS01 rna ? GO:0000244 ... O43395 38778104
    868755 8qzs:J (4.1) BS02 rna ? GO:0000244 ... O43395 38778104
    868756 8qzs:L (4.1) BS01 rna ? GO:0000244 ... Q8WWY3 38778104
    868757 8qzs:L (4.1) BS02 rna ? GO:0000244 ... Q8WWY3 38778104
    868758 8qzs:M (4.1) BS01 rna ? GO:0000244 ... P55769 38778104
    868759 8qzs:N (4.1) BS01 rna ? GO:0000244 ... O94906 38778104
    868760 8qzs:X (4.1) BS01 rna ? GO:0000398 ... O75554 38778104
    868761 8qzs:X (4.1) BS02 rna ? GO:0000398 ... O75554 38778104
    868762 8qzs:r (4.1) BS01 rna ? GO:0000398 ... Q96NC0 38778104
    868763 8qzt:A (3.52) BS01 XE9 N/A GO:0005515 ... P31224 N/A
    868764 8qzt:C (3.52) BS01 XE9 N/A GO:0005515 ... P31224 N/A
    868765 8qzw:A (1.68) BS01 NAD N/A GO:0005737 ... F1AQF9 38923395
    868766 8qzx:A (3.01) BS01 NAD N/A GO:0005737 ... F1AQF9 38923395
    868767 8qzx:A (3.01) BS02 NAD N/A GO:0005737 ... F1AQF9 38923395
    868768 8qzx:B (3.01) BS01 NAD N/A GO:0005737 ... F1AQF9 38923395
    868769 8qzx:B (3.01) BS02 NAD N/A GO:0005737 ... F1AQF9 38923395
    868770 8qzx:C (3.01) BS01 NAD N/A GO:0005737 ... F1AQF9 38923395
    868771 8qzx:C (3.01) BS02 NAD N/A GO:0005737 ... F1AQF9 38923395
    868772 8qzx:D (3.01) BS01 NAD N/A GO:0005737 ... F1AQF9 38923395
    868773 8qzx:D (3.01) BS02 NAD N/A GO:0005737 ... F1AQF9 38923395
    868774 8qzz:A (3.35) BS01 peptide 3.6.5.3 GO:0000049 ... P41091 38547060
    868775 8qzz:A (3.35) BS02 GNP 3.6.5.3 GO:0000049 ... P41091 38547060
    868776 8r00:A (1.95) BS01 XFQ N/A GO:0003677 ... O75469 39900639
    868777 8r02:B (2.5) BS01 XFZ ? GO:0005515 ... Q9UBQ0 38487369
    868778 8r02:D (2.5) BS01 XFZ ? GO:0015031 ... Q96QK1 38487369
    868779 8r03:A (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    868780 8r03:B (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    868781 8r03:C (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    868782 8r03:D (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    868783 8r03:E (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    868784 8r03:F (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    868785 8r03:G (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    868786 8r03:H (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    868787 8r03:I (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    868788 8r03:J (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    868789 8r03:K (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    868790 8r03:L (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    868791 8r03:M (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    868792 8r03:N (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    868793 8r04:A (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    868794 8r04:B (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    868795 8r04:C (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    868796 8r04:D (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    868797 8r04:E (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    868798 8r04:F (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    868799 8r04:G (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    868800 8r04:H (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).