SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    868601 8rn7:A (3.09) BS02 peptide N/A GO:0003723 ... Q5V8Z9 39160148
    868602 8rn7:B (3.09) BS01 peptide N/A GO:0000166 ... Q5V8Y6 39160148
    868603 8rn7:B (3.09) BS02 MG N/A GO:0000166 ... Q5V8Y6 39160148
    868604 8rn8:B (2.92) BS01 MG N/A GO:0000166 ... Q5V8Y6 39160148
    868605 8rn8:E (2.92) BS01 MG N/A GO:0000166 ... Q5V8Y6 39160148
    868606 8rn9:A (3.31) BS01 peptide N/A GO:0003723 ... Q5V8Z9 39160148
    868607 8rn9:B (3.31) BS01 peptide N/A GO:0000166 ... Q5V8Y6 39160148
    868608 8rnc:A (3.52) BS01 peptide N/A GO:0003723 ... Q5V8Z9 39160148
    868609 8rnc:B (3.52) BS01 peptide N/A GO:0000166 ... Q5V8Y6 39160148
    868610 8rnd:A (1.56) BS01 peptide 3.4.22.27 GO:0006508 ... P25774 38811854
    868611 8rne:A (1.71) BS01 peptide N/A N/A Q59EE1 39652590
    868612 8rne:C (1.71) BS01 peptide N/A N/A Q59EE1 39652590
    868613 8rne:F (1.71) BS01 peptide N/A N/A Q59EE1 39652590
    868614 8rne:F (1.71) BS02 peptide N/A N/A Q59EE1 39652590
    868615 8rnf:A (1.872) BS01 peptide N/A N/A Q59EE1 39652590
    868616 8rnf:C (1.872) BS01 peptide N/A N/A Q59EE1 39652590
    868617 8rnf:C (1.872) BS02 peptide N/A N/A Q59EE1 39652590
    868618 8rnf:F (1.872) BS01 peptide N/A N/A Q59EE1 39652590
    868619 8rng:A (1.45) BS01 peptide ? N/A S6AU73 N/A
    868620 8rng:A (1.45) BS02 MG ? N/A S6AU73 N/A
    868621 8rng:A (1.45) BS03 MG ? N/A S6AU73 N/A
    868622 8rng:A (1.45) BS04 MG ? N/A S6AU73 N/A
    868623 8rng:B (1.45) BS01 MG ? GO:0000139 ... P61769 N/A
    868624 8rnh:A (1.6) BS01 peptide ? N/A S6AU73 38737448
    868625 8rni:A (2.49) BS01 peptide N/A N/A P04439 39030753
    868626 8rnj:A (1.6) BS01 MG N/A N/A N/A 39367827
    868627 8rnj:A (1.6) BS02 HEM N/A N/A N/A 39367827
    868628 8rnj:B (1.6) BS01 MG N/A N/A N/A 39367827
    868629 8rnj:B (1.6) BS02 HEM N/A N/A N/A 39367827
    868630 8rnk:A (1.6) BS01 HEM N/A N/A N/A 39367827
    868631 8rnk:A (1.6) BS02 MG N/A N/A N/A 39367827
    868632 8rnk:B (1.6) BS01 HEM N/A N/A N/A 39367827
    868633 8rnk:B (1.6) BS02 MG N/A N/A N/A 39367827
    868634 8rnl:A (1.6) BS01 HEM N/A N/A N/A 39367827
    868635 8rnl:A (1.6) BS02 MG N/A N/A N/A 39367827
    868636 8rnl:B (1.6) BS01 HEM N/A N/A N/A 39367827
    868637 8rnl:B (1.6) BS02 MG N/A N/A N/A 39367827
    868638 8rnm:A (1.95) BS01 HEM N/A N/A N/A 39367827
    868639 8rnm:A (1.95) BS02 TES N/A N/A N/A 39367827
    868640 8rnm:A (1.95) BS03 MG N/A N/A N/A 39367827
    868641 8rnm:B (1.95) BS01 HEM N/A N/A N/A 39367827
    868642 8rnm:B (1.95) BS02 TES N/A N/A N/A 39367827
    868643 8rnm:B (1.95) BS03 MG N/A N/A N/A 39367827
    868644 8rnn:A (1.58) BS01 HEM N/A N/A N/A 39367827
    868645 8rnn:A (1.58) BS02 PDN N/A N/A N/A 39367827
    868646 8rnn:A (1.58) BS03 MG N/A N/A N/A 39367827
    868647 8rnn:B (1.58) BS01 HEM N/A N/A N/A 39367827
    868648 8rnn:B (1.58) BS02 PDN N/A N/A N/A 39367827
    868649 8rnn:B (1.58) BS03 MG N/A N/A N/A 39367827
    868650 8rno:A (2.05) BS01 HEM N/A N/A N/A 39367827
    868651 8rno:A (2.05) BS02 MG N/A N/A N/A 39367827
    868652 8rno:B (2.05) BS01 HEM N/A N/A N/A 39367827
    868653 8rno:B (2.05) BS02 MG N/A N/A N/A 39367827
    868654 8rnp:A (1.92) BS01 HEM N/A N/A N/A 39367827
    868655 8rnp:A (1.92) BS02 MG N/A N/A N/A 39367827
    868656 8rnp:B (1.92) BS01 HEM N/A N/A N/A 39367827
    868657 8rnp:B (1.92) BS02 MG N/A N/A N/A 39367827
    868658 8rnq:A (1.8) BS01 HEM N/A N/A N/A 39367827
    868659 8rnq:A (1.8) BS02 MG N/A N/A N/A 39367827
    868660 8rnq:B (1.8) BS01 HEM N/A N/A N/A 39367827
    868661 8rnq:B (1.8) BS02 MG N/A N/A N/A 39367827
    868662 8rnr:A (1.72) BS01 HEM N/A N/A N/A 39367827
    868663 8rnr:A (1.72) BS02 MG N/A N/A N/A 39367827
    868664 8rnr:B (1.72) BS01 HEM N/A N/A N/A 39367827
    868665 8rnr:B (1.72) BS02 MG N/A N/A N/A 39367827
    868666 8rns:A (1.14) BS01 ZN N/A N/A P00918 N/A
    868667 8rns:A (1.14) BS02 A1H15 N/A N/A P00918 N/A
    868668 8ro0:A (2.9) BS01 rna N/A GO:0000244 ... P34369 38925148
    868669 8ro0:A (2.9) BS02 rna N/A GO:0000244 ... P34369 38925148
    868670 8ro0:A (2.9) BS03 rna N/A GO:0000244 ... P34369 38925148
    868671 8ro0:A (2.9) BS04 rna N/A GO:0000244 ... P34369 38925148
    868672 8ro0:A (2.9) BS05 IHP N/A GO:0000244 ... P34369 38925148
    868673 8ro0:C (2.9) BS01 rna N/A GO:0000398 ... Q23463 38925148
    868674 8ro0:C (2.9) BS02 GTP N/A GO:0000398 ... Q23463 38925148
    868675 8ro0:C (2.9) BS03 MG N/A GO:0000398 ... Q23463 38925148
    868676 8ro0:E (2.9) BS01 rna N/A GO:0006397 ... Q19211 38925148
    868677 8ro0:J (2.9) BS01 rna N/A GO:0000245 ... O16376 38925148
    868678 8ro0:J (2.9) BS02 IHP N/A GO:0000245 ... O16376 38925148
    868679 8ro0:L (2.9) BS01 rna N/A GO:0000398 ... G5EFC4 38925148
    868680 8ro0:L (2.9) BS02 rna N/A GO:0000398 ... G5EFC4 38925148
    868681 8ro0:M (2.9) BS01 rna N/A GO:0000974 ... Q09385 38925148
    868682 8ro0:M (2.9) BS02 rna N/A GO:0000974 ... Q09385 38925148
    868683 8ro0:N (2.9) BS01 rna N/A GO:0000398 ... P34313 38925148
    868684 8ro0:N (2.9) BS02 rna N/A GO:0000398 ... P34313 38925148
    868685 8ro0:N (2.9) BS03 ZN N/A GO:0000398 ... P34313 38925148
    868686 8ro0:N (2.9) BS04 ZN N/A GO:0000398 ... P34313 38925148
    868687 8ro0:N (2.9) BS05 ZN N/A GO:0000398 ... P34313 38925148
    868688 8ro0:O (2.9) BS01 rna N/A GO:0000974 ... Q22412 38925148
    868689 8ro0:O (2.9) BS02 rna N/A GO:0000974 ... Q22412 38925148
    868690 8ro0:O (2.9) BS03 ZN N/A GO:0000974 ... Q22412 38925148
    868691 8ro0:O (2.9) BS04 ZN N/A GO:0000974 ... Q22412 38925148
    868692 8ro0:O (2.9) BS05 ZN N/A GO:0000974 ... Q22412 38925148
    868693 8ro0:P (2.9) BS01 rna N/A GO:0000398 ... O45766 38925148
    868694 8ro0:P (2.9) BS02 rna N/A GO:0000398 ... O45766 38925148
    868695 8ro0:P (2.9) BS03 rna N/A GO:0000398 ... O45766 38925148
    868696 8ro0:R (2.9) BS01 rna N/A GO:0000398 ... Q22836 38925148
    868697 8ro0:R (2.9) BS02 rna N/A GO:0000398 ... Q22836 38925148
    868698 8ro0:T (2.9) BS01 rna N/A GO:0000398 ... G5EEL2 38925148
    868699 8ro0:W (2.9) BS01 rna N/A GO:0000398 ... O44729 38925148
    868700 8ro0:a (2.9) BS01 rna N/A GO:0000243 ... Q17348 38925148
    868701 8ro0:b (2.9) BS01 rna N/A GO:0000398 ... P91918 38925148
    868702 8ro0:c (2.9) BS01 rna N/A GO:0000387 ... Q10013 38925148
    868703 8ro0:d (2.9) BS01 rna N/A GO:0000387 ... Q18786 38925148
    868704 8ro0:e (2.9) BS01 rna N/A GO:0000387 ... Q9XTU6 38925148
    868705 8ro0:f (2.9) BS01 rna N/A GO:0000387 ... P34659 38925148
    868706 8ro0:g (2.9) BS01 rna N/A GO:0000387 ... Q9N4G9 38925148
    868707 8ro0:n (2.9) BS01 rna N/A GO:0000387 ... Q9N4G9 38925148
    868708 8ro0:o (2.9) BS01 rna N/A GO:0000389 ... Q9BLB6 38925148
    868709 8ro1:A (3.0) BS01 rna N/A GO:0000244 ... P34369 38925148
    868710 8ro1:A (3.0) BS02 rna N/A GO:0000244 ... P34369 38925148
    868711 8ro1:A (3.0) BS03 rna N/A GO:0000244 ... P34369 38925148
    868712 8ro1:A (3.0) BS04 rna N/A GO:0000244 ... P34369 38925148
    868713 8ro1:A (3.0) BS05 IHP N/A GO:0000244 ... P34369 38925148
    868714 8ro1:C (3.0) BS01 rna N/A GO:0000398 ... Q23463 38925148
    868715 8ro1:C (3.0) BS02 GTP N/A GO:0000398 ... Q23463 38925148
    868716 8ro1:C (3.0) BS03 MG N/A GO:0000398 ... Q23463 38925148
    868717 8ro1:DX (3.0) BS01 rna N/A GO:0003676 ... Q20875 38925148
    868718 8ro1:E (3.0) BS01 rna N/A GO:0006397 ... Q19211 38925148
    868719 8ro1:J (3.0) BS01 rna N/A GO:0000245 ... O16376 38925148
    868720 8ro1:J (3.0) BS02 IHP N/A GO:0000245 ... O16376 38925148
    868721 8ro1:L (3.0) BS01 rna N/A GO:0000398 ... G5EFC4 38925148
    868722 8ro1:L (3.0) BS02 rna N/A GO:0000398 ... G5EFC4 38925148
    868723 8ro1:L2 (3.0) BS01 rna N/A GO:0000398 ... Q10946 38925148
    868724 8ro1:L2 (3.0) BS02 rna N/A GO:0000398 ... Q10946 38925148
    868725 8ro1:L2 (3.0) BS03 ZN N/A GO:0000398 ... Q10946 38925148
    868726 8ro1:M (3.0) BS01 rna N/A GO:0000974 ... Q09385 38925148
    868727 8ro1:M (3.0) BS02 rna N/A GO:0000974 ... Q09385 38925148
    868728 8ro1:N (3.0) BS01 rna N/A GO:0000398 ... P34313 38925148
    868729 8ro1:N (3.0) BS02 rna N/A GO:0000398 ... P34313 38925148
    868730 8ro1:N (3.0) BS03 ZN N/A GO:0000398 ... P34313 38925148
    868731 8ro1:N (3.0) BS04 ZN N/A GO:0000398 ... P34313 38925148
    868732 8ro1:N (3.0) BS05 ZN N/A GO:0000398 ... P34313 38925148
    868733 8ro1:O (3.0) BS01 rna N/A GO:0000974 ... Q22412 38925148
    868734 8ro1:O (3.0) BS02 rna N/A GO:0000974 ... Q22412 38925148
    868735 8ro1:O (3.0) BS03 ZN N/A GO:0000974 ... Q22412 38925148
    868736 8ro1:O (3.0) BS04 ZN N/A GO:0000974 ... Q22412 38925148
    868737 8ro1:O (3.0) BS05 ZN N/A GO:0000974 ... Q22412 38925148
    868738 8ro1:P (3.0) BS01 rna N/A GO:0000398 ... O45766 38925148
    868739 8ro1:P (3.0) BS02 rna N/A GO:0000398 ... O45766 38925148
    868740 8ro1:P (3.0) BS03 rna N/A GO:0000398 ... O45766 38925148
    868741 8ro1:R (3.0) BS01 rna N/A GO:0000398 ... Q22836 38925148
    868742 8ro1:R (3.0) BS02 rna N/A GO:0000398 ... Q22836 38925148
    868743 8ro1:T (3.0) BS01 rna N/A GO:0000398 ... G5EEL2 38925148
    868744 8ro1:W (3.0) BS01 rna N/A GO:0000398 ... O44729 38925148
    868745 8ro1:W (3.0) BS02 rna N/A GO:0000398 ... O44729 38925148
    868746 8ro1:a (3.0) BS01 rna N/A GO:0000243 ... Q17348 38925148
    868747 8ro1:b (3.0) BS01 rna N/A GO:0000398 ... P91918 38925148
    868748 8ro1:c (3.0) BS01 rna N/A GO:0000387 ... Q10013 38925148
    868749 8ro1:d (3.0) BS01 rna N/A GO:0000387 ... Q18786 38925148
    868750 8ro1:e (3.0) BS01 rna N/A GO:0000387 ... Q9XTU6 38925148
    868751 8ro1:f (3.0) BS01 rna N/A GO:0000387 ... P34659 38925148
    868752 8ro1:g (3.0) BS01 rna N/A GO:0000387 ... Q9N4G9 38925148
    868753 8ro1:o (3.0) BS01 rna N/A GO:0000389 ... Q9BLB6 38925148
    868754 8ro1:p (3.0) BS01 rna N/A GO:0000398 ... Q21323 38925148
    868755 8ro2:A (3.5) BS01 rna N/A GO:0000244 ... Q6P2Q9 38925148
    868756 8ro2:A (3.5) BS02 rna N/A GO:0000244 ... Q6P2Q9 38925148
    868757 8ro2:A (3.5) BS03 rna N/A GO:0000244 ... Q6P2Q9 38925148
    868758 8ro2:A (3.5) BS04 rna N/A GO:0000244 ... Q6P2Q9 38925148
    868759 8ro2:A (3.5) BS05 IHP N/A GO:0000244 ... Q6P2Q9 38925148
    868760 8ro2:C (3.5) BS01 GTP N/A GO:0000398 ... Q15029 38925148
    868761 8ro2:DX (3.5) BS01 peptide N/A GO:0000398 ... O43143 38925148
    868762 8ro2:I (3.5) BS01 peptide N/A GO:0000349 ... Q9HCS7 38925148
    868763 8ro2:L (3.5) BS01 rna N/A GO:0000077 ... Q99459 38925148
    868764 8ro2:L (3.5) BS02 rna N/A GO:0000077 ... Q99459 38925148
    868765 8ro2:L2 (3.5) BS01 rna N/A GO:0000398 ... Q2TBE0 38925148
    868766 8ro2:L2 (3.5) BS02 rna N/A GO:0000398 ... Q2TBE0 38925148
    868767 8ro2:L2 (3.5) BS03 rna N/A GO:0000398 ... Q2TBE0 38925148
    868768 8ro2:M (3.5) BS01 rna N/A GO:0000398 ... O95926 38925148
    868769 8ro2:N (3.5) BS01 rna N/A GO:0000398 ... P41223 38925148
    868770 8ro2:N (3.5) BS02 ZN N/A GO:0000398 ... P41223 38925148
    868771 8ro2:N (3.5) BS03 ZN N/A GO:0000398 ... P41223 38925148
    868772 8ro2:N (3.5) BS04 ZN N/A GO:0000398 ... P41223 38925148
    868773 8ro2:O (3.5) BS01 rna N/A GO:0000398 ... Q9NW64 38925148
    868774 8ro2:O (3.5) BS02 rna N/A GO:0000398 ... Q9NW64 38925148
    868775 8ro2:P (3.5) BS01 rna N/A GO:0000398 ... Q9P013 38925148
    868776 8ro2:R (3.5) BS01 rna N/A GO:0000122 ... Q13573 38925148
    868777 8ro2:T (3.5) BS01 rna N/A GO:0000398 ... O43660 38925148
    868778 8ro2:W (3.5) BS01 rna N/A GO:0000398 ... O60508 38925148
    868779 8ro2:a (3.5) BS01 rna N/A GO:0000243 ... P62318 38925148
    868780 8ro2:b (3.5) BS01 rna N/A GO:0000387 ... P14678 38925148
    868781 8ro2:c (3.5) BS01 rna N/A GO:0000243 ... P62314 38925148
    868782 8ro2:d (3.5) BS01 rna N/A GO:0000245 ... P62316 38925148
    868783 8ro2:e (3.5) BS01 rna N/A GO:0000245 ... P62304 38925148
    868784 8ro2:f (3.5) BS01 rna N/A GO:0000387 ... P62306 38925148
    868785 8ro2:g (3.5) BS01 rna N/A GO:0000245 ... P62308 38925148
    868786 8ro4:A (2.51) BS01 MN N/A N/A N/A 39041709
    868787 8ro4:B (2.51) BS01 MN N/A N/A N/A 39041709
    868788 8ro4:C (2.51) BS01 MN N/A N/A N/A 39041709
    868789 8ro4:D (2.51) BS01 MN N/A N/A N/A 39041709
    868790 8ro4:E (2.51) BS01 MN N/A N/A N/A 39041709
    868791 8ro4:F (2.51) BS01 MN N/A N/A N/A 39041709
    868792 8roa:A (2.4355) BS01 ADP N/A GO:0005524 ... Q14683 39240714
    868793 8roa:C (2.4355) BS01 ADP N/A GO:0005524 ... Q14683 39240714
    868794 8rob:A (2.5019) BS01 MG N/A GO:0005524 ... Q14683 39240714
    868795 8rob:A (2.5019) BS02 AGS N/A GO:0005524 ... Q14683 39240714
    868796 8roe:A (1.36) BS01 ADP N/A GO:0005524 ... Q14683 39240714
    868797 8rof:A (1.65) BS01 ADP N/A GO:0005524 ... Q14683 39240714
    868798 8rog:A (1.94) BS01 MG N/A GO:0005524 ... Q14683 39240714
    868799 8rog:A (1.94) BS02 AGS N/A GO:0005524 ... Q14683 39240714
    868800 8roi:A (2.45) BS01 ADP N/A GO:0005524 ... Q9UQE7 39240714

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).