SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    868801 8r04:I (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    868802 8r04:J (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    868803 8r04:K (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    868804 8r04:L (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    868805 8r04:M (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    868806 8r04:N (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    868807 8r05:A (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    868808 8r05:B (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    868809 8r05:C (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    868810 8r05:D (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    868811 8r05:E (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    868812 8r05:F (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    868813 8r05:G (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    868814 8r05:H (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    868815 8r05:I (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    868816 8r05:J (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    868817 8r05:K (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    868818 8r05:L (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    868819 8r05:M (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    868820 8r05:N (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    868821 8r06:A (1.7) BS01 PO8 3.2.1.45 GO:0004348 ... F6BL85 28937220
    868822 8r06:A (1.7) BS02 CA 3.2.1.45 GO:0004348 ... F6BL85 28937220
    868823 8r08:11 (6.1) BS01 rna ? GO:0000243 ... P62314 38778104
    868824 8r08:12 (6.1) BS01 rna ? GO:0000244 ... P62316 38778104
    868825 8r08:13 (6.1) BS01 rna ? GO:0000243 ... P62318 38778104
    868826 8r08:1K (6.1) BS01 rna ? GO:0000387 ... P08621 38778104
    868827 8r08:1b (6.1) BS01 rna ? GO:0000244 ... P14678 38778104
    868828 8r08:1e (6.1) BS01 rna ? GO:0000244 ... P62304 38778104
    868829 8r08:1f (6.1) BS01 rna ? GO:0000244 ... P62306 38778104
    868830 8r08:1g (6.1) BS01 rna ? GO:0000244 ... P62308 38778104
    868831 8r08:21 (6.1) BS01 rna ? GO:0000243 ... P62314 38778104
    868832 8r08:22 (6.1) BS01 rna ? GO:0000244 ... P62316 38778104
    868833 8r08:23 (6.1) BS01 rna ? GO:0000243 ... P62318 38778104
    868834 8r08:2B (6.1) BS01 rna ? GO:0000387 ... P08579 38778104
    868835 8r08:2e (6.1) BS01 rna ? GO:0000244 ... P62304 38778104
    868836 8r08:2f (6.1) BS01 rna ? GO:0000244 ... P62306 38778104
    868837 8r08:2g (6.1) BS01 rna ? GO:0000244 ... P62308 38778104
    868838 8r08:41 (6.1) BS01 peptide ? GO:0000243 ... P62314 38778104
    868839 8r08:41 (6.1) BS02 rna ? GO:0000243 ... P62314 38778104
    868840 8r08:42 (6.1) BS01 peptide ? GO:0000244 ... P62316 38778104
    868841 8r08:42 (6.1) BS02 rna ? GO:0000244 ... P62316 38778104
    868842 8r08:43 (6.1) BS01 rna ? GO:0000243 ... P62318 38778104
    868843 8r08:4b (6.1) BS01 rna ? GO:0000244 ... P14678 38778104
    868844 8r08:4e (6.1) BS01 rna ? GO:0000244 ... P62304 38778104
    868845 8r08:4f (6.1) BS01 rna ? GO:0000244 ... P62306 38778104
    868846 8r08:4g (6.1) BS01 rna ? GO:0000244 ... P62308 38778104
    868847 8r08:51 (6.1) BS01 rna ? GO:0000243 ... P62314 38778104
    868848 8r08:52 (6.1) BS01 rna ? GO:0000244 ... P62316 38778104
    868849 8r08:5b (6.1) BS01 rna ? GO:0000244 ... P14678 38778104
    868850 8r08:5f (6.1) BS01 rna ? GO:0000244 ... P62306 38778104
    868851 8r08:5g (6.1) BS01 rna ? GO:0000244 ... P62308 38778104
    868852 8r08:63 (6.1) BS01 rna ? GO:0000244 ... P62310 38778104
    868853 8r08:68 (6.1) BS01 rna ? GO:0000244 ... O95777 38778104
    868854 8r08:9 (6.1) BS01 rna ? GO:0000375 ... Q12874 38778104
    868855 8r08:A (6.1) BS01 peptide ? GO:0000244 ... Q6P2Q9 38778104
    868856 8r08:A (6.1) BS02 rna ? GO:0000244 ... Q6P2Q9 38778104
    868857 8r08:B1 (6.1) BS01 rna ? GO:0000245 ... O75533 38778104
    868858 8r08:B1 (6.1) BS02 rna ? GO:0000245 ... O75533 38778104
    868859 8r08:B2 (6.1) BS01 rna ? GO:0000387 ... Q13435 38778104
    868860 8r08:B6 (6.1) BS01 rna ? GO:0000387 ... Q9Y3B4 38778104
    868861 8r08:BP (6.1) BS01 rna ? GO:0000387 ... Q7RTV0 38778104
    868862 8r08:G (6.1) BS01 rna 3.6.4.13 GO:0000244 ... Q9BUQ8 38778104
    868863 8r08:G (6.1) BS02 rna 3.6.4.13 GO:0000244 ... Q9BUQ8 38778104
    868864 8r08:J (6.1) BS01 rna ? GO:0000244 ... O43395 38778104
    868865 8r08:L (6.1) BS01 rna ? GO:0000244 ... Q8WWY3 38778104
    868866 8r08:L (6.1) BS02 rna ? GO:0000244 ... Q8WWY3 38778104
    868867 8r08:M (6.1) BS01 rna ? GO:0000244 ... P55769 38778104
    868868 8r08:M (6.1) BS02 rna ? GO:0000244 ... P55769 38778104
    868869 8r08:R (6.1) BS01 rna ? GO:0000387 ... Q9BTD8 38778104
    868870 8r08:R (6.1) BS02 rna ? GO:0000387 ... Q9BTD8 38778104
    868871 8r08:S (6.1) BS01 peptide ? GO:0000244 ... O43290 38778104
    868872 8r08:S (6.1) BS02 rna ? GO:0000244 ... O43290 38778104
    868873 8r09:21 (4.3) BS01 rna ? GO:0000243 ... P62314 38778104
    868874 8r09:22 (4.3) BS01 rna ? GO:0000244 ... P62316 38778104
    868875 8r09:23 (4.3) BS01 rna ? GO:0000243 ... P62318 38778104
    868876 8r09:2B (4.3) BS01 rna ? GO:0000387 ... P08579 38778104
    868877 8r09:2e (4.3) BS01 rna ? GO:0000244 ... P62304 38778104
    868878 8r09:2f (4.3) BS01 rna ? GO:0000244 ... P62306 38778104
    868879 8r09:2g (4.3) BS01 rna ? GO:0000244 ... P62308 38778104
    868880 8r09:41 (4.3) BS01 rna ? GO:0000243 ... P62314 38778104
    868881 8r09:42 (4.3) BS01 rna ? GO:0000244 ... P62316 38778104
    868882 8r09:43 (4.3) BS01 rna ? GO:0000243 ... P62318 38778104
    868883 8r09:4e (4.3) BS01 rna ? GO:0000244 ... P62304 38778104
    868884 8r09:4f (4.3) BS01 rna ? GO:0000244 ... P62306 38778104
    868885 8r09:4g (4.3) BS01 rna ? GO:0000244 ... P62308 38778104
    868886 8r09:51 (4.3) BS01 rna ? GO:0000243 ... P62314 38778104
    868887 8r09:52 (4.3) BS01 rna ? GO:0000244 ... P62316 38778104
    868888 8r09:53 (4.3) BS01 rna ? GO:0000243 ... P62318 38778104
    868889 8r09:5b (4.3) BS01 rna ? GO:0000244 ... P14678 38778104
    868890 8r09:5e (4.3) BS01 rna ? GO:0000244 ... P62304 38778104
    868891 8r09:5f (4.3) BS01 rna ? GO:0000244 ... P62306 38778104
    868892 8r09:5g (4.3) BS01 rna ? GO:0000244 ... P62308 38778104
    868893 8r09:63 (4.3) BS01 rna ? GO:0000244 ... P62310 38778104
    868894 8r09:68 (4.3) BS01 rna ? GO:0000244 ... O95777 38778104
    868895 8r09:7 (4.3) BS01 rna ? GO:0000387 ... Q15459 38778104
    868896 8r09:7 (4.3) BS02 rna ? GO:0000387 ... Q15459 38778104
    868897 8r09:A (4.3) BS01 rna ? GO:0000244 ... Q6P2Q9 38778104
    868898 8r09:A (4.3) BS02 rna ? GO:0000244 ... Q6P2Q9 38778104
    868899 8r09:A (4.3) BS03 rna ? GO:0000244 ... Q6P2Q9 38778104
    868900 8r09:B1 (4.3) BS01 rna ? GO:0000245 ... O75533 38778104
    868901 8r09:B1 (4.3) BS02 rna ? GO:0000245 ... O75533 38778104
    868902 8r09:B6 (4.3) BS01 rna ? GO:0000387 ... Q9Y3B4 38778104
    868903 8r09:D (4.3) BS01 rna ? GO:0000245 ... P83876 38778104
    868904 8r09:D (4.3) BS02 rna ? GO:0000245 ... P83876 38778104
    868905 8r09:E (4.3) BS01 rna ? GO:0000244 ... Q96DI7 38778104
    868906 8r09:J (4.3) BS01 rna ? GO:0000244 ... O43395 38778104
    868907 8r09:L (4.3) BS01 rna ? GO:0000244 ... Q8WWY3 38778104
    868908 8r09:L (4.3) BS02 rna ? GO:0000244 ... Q8WWY3 38778104
    868909 8r09:M (4.3) BS01 rna ? GO:0000244 ... P55769 38778104
    868910 8r09:N (4.3) BS01 rna ? GO:0000244 ... O94906 38778104
    868911 8r09:N (4.3) BS02 rna ? GO:0000244 ... O94906 38778104
    868912 8r0a:21 (5.8) BS01 rna ? GO:0000243 ... P62314 38778104
    868913 8r0a:22 (5.8) BS01 rna ? GO:0000244 ... P62316 38778104
    868914 8r0a:23 (5.8) BS01 rna ? GO:0000243 ... P62318 38778104
    868915 8r0a:2B (5.8) BS01 rna ? GO:0000387 ... P08579 38778104
    868916 8r0a:2e (5.8) BS01 rna ? GO:0000244 ... P62304 38778104
    868917 8r0a:2f (5.8) BS01 rna ? GO:0000244 ... P62306 38778104
    868918 8r0a:2g (5.8) BS01 rna ? GO:0000244 ... P62308 38778104
    868919 8r0a:41 (5.8) BS01 rna ? GO:0000243 ... P62314 38778104
    868920 8r0a:42 (5.8) BS01 peptide ? GO:0000244 ... P62316 38778104
    868921 8r0a:42 (5.8) BS02 rna ? GO:0000244 ... P62316 38778104
    868922 8r0a:43 (5.8) BS01 rna ? GO:0000243 ... P62318 38778104
    868923 8r0a:4e (5.8) BS01 rna ? GO:0000244 ... P62304 38778104
    868924 8r0a:4f (5.8) BS01 rna ? GO:0000244 ... P62306 38778104
    868925 8r0a:4g (5.8) BS01 rna ? GO:0000244 ... P62308 38778104
    868926 8r0a:51 (5.8) BS01 rna ? GO:0000243 ... P62314 38778104
    868927 8r0a:52 (5.8) BS01 rna ? GO:0000244 ... P62316 38778104
    868928 8r0a:53 (5.8) BS01 rna ? GO:0000243 ... P62318 38778104
    868929 8r0a:5b (5.8) BS01 rna ? GO:0000244 ... P14678 38778104
    868930 8r0a:5e (5.8) BS01 rna ? GO:0000244 ... P62304 38778104
    868931 8r0a:5f (5.8) BS01 rna ? GO:0000244 ... P62306 38778104
    868932 8r0a:5g (5.8) BS01 rna ? GO:0000244 ... P62308 38778104
    868933 8r0a:63 (5.8) BS01 rna ? GO:0000244 ... P62310 38778104
    868934 8r0a:68 (5.8) BS01 rna ? GO:0000244 ... O95777 38778104
    868935 8r0a:8 (5.8) BS01 rna ? GO:0000245 ... Q15428 38778104
    868936 8r0a:A (5.8) BS01 rna ? GO:0000244 ... Q6P2Q9 38778104
    868937 8r0a:A (5.8) BS02 peptide ? GO:0000244 ... Q6P2Q9 38778104
    868938 8r0a:A (5.8) BS03 rna ? GO:0000244 ... Q6P2Q9 38778104
    868939 8r0a:A (5.8) BS04 rna ? GO:0000244 ... Q6P2Q9 38778104
    868940 8r0a:B1 (5.8) BS01 rna ? GO:0000245 ... O75533 38778104
    868941 8r0a:B1 (5.8) BS02 rna ? GO:0000245 ... O75533 38778104
    868942 8r0a:B2 (5.8) BS01 rna ? GO:0000387 ... Q13435 38778104
    868943 8r0a:B6 (5.8) BS01 rna ? GO:0000387 ... Q9Y3B4 38778104
    868944 8r0a:D (5.8) BS01 rna ? GO:0000245 ... P83876 38778104
    868945 8r0a:D (5.8) BS02 rna ? GO:0000245 ... P83876 38778104
    868946 8r0a:D (5.8) BS03 rna ? GO:0000245 ... P83876 38778104
    868947 8r0a:J (5.8) BS01 rna ? GO:0000244 ... O43395 38778104
    868948 8r0a:J (5.8) BS02 rna ? GO:0000244 ... O43395 38778104
    868949 8r0a:L (5.8) BS01 rna ? GO:0000244 ... Q8WWY3 38778104
    868950 8r0a:L (5.8) BS02 rna ? GO:0000244 ... Q8WWY3 38778104
    868951 8r0a:M (5.8) BS01 rna ? GO:0000244 ... P55769 38778104
    868952 8r0a:M (5.8) BS02 rna ? GO:0000244 ... P55769 38778104
    868953 8r0a:R (5.8) BS01 rna ? GO:0000387 ... Q9BTD8 38778104
    868954 8r0a:R (5.8) BS02 rna ? GO:0000387 ... Q9BTD8 38778104
    868955 8r0a:S (5.8) BS01 peptide ? GO:0000244 ... O43290 38778104
    868956 8r0a:S (5.8) BS02 rna ? GO:0000244 ... O43290 38778104
    868957 8r0b:21 (4.4) BS01 rna ? GO:0000243 ... P62314 38778104
    868958 8r0b:22 (4.4) BS01 rna ? GO:0000244 ... P62316 38778104
    868959 8r0b:23 (4.4) BS01 rna ? GO:0000243 ... P62318 38778104
    868960 8r0b:2B (4.4) BS01 rna ? GO:0000387 ... P08579 38778104
    868961 8r0b:2f (4.4) BS01 rna ? GO:0000244 ... P62306 38778104
    868962 8r0b:2g (4.4) BS01 rna ? GO:0000244 ... P62308 38778104
    868963 8r0b:41 (4.4) BS01 rna ? GO:0000243 ... P62314 38778104
    868964 8r0b:42 (4.4) BS01 rna ? GO:0000244 ... P62316 38778104
    868965 8r0b:43 (4.4) BS01 rna ? GO:0000243 ... P62318 38778104
    868966 8r0b:4e (4.4) BS01 rna ? GO:0000244 ... P62304 38778104
    868967 8r0b:4f (4.4) BS01 rna ? GO:0000244 ... P62306 38778104
    868968 8r0b:4g (4.4) BS01 rna ? GO:0000244 ... P62308 38778104
    868969 8r0b:51 (4.4) BS01 rna ? GO:0000243 ... P62314 38778104
    868970 8r0b:52 (4.4) BS01 rna ? GO:0000244 ... P62316 38778104
    868971 8r0b:53 (4.4) BS01 rna ? GO:0000243 ... P62318 38778104
    868972 8r0b:5b (4.4) BS01 rna ? GO:0000244 ... P14678 38778104
    868973 8r0b:5e (4.4) BS01 rna ? GO:0000244 ... P62304 38778104
    868974 8r0b:5f (4.4) BS01 rna ? GO:0000244 ... P62306 38778104
    868975 8r0b:5g (4.4) BS01 rna ? GO:0000244 ... P62308 38778104
    868976 8r0b:63 (4.4) BS01 rna ? GO:0000244 ... P62310 38778104
    868977 8r0b:68 (4.4) BS01 rna ? GO:0000244 ... O95777 38778104
    868978 8r0b:7 (4.4) BS01 rna ? GO:0000387 ... Q15459 38778104
    868979 8r0b:8 (4.4) BS01 rna ? GO:0000245 ... Q15428 38778104
    868980 8r0b:A (4.4) BS01 rna ? GO:0000244 ... Q6P2Q9 38778104
    868981 8r0b:A (4.4) BS02 rna ? GO:0000244 ... Q6P2Q9 38778104
    868982 8r0b:A (4.4) BS03 rna ? GO:0000244 ... Q6P2Q9 38778104
    868983 8r0b:B1 (4.4) BS01 rna ? GO:0000245 ... O75533 38778104
    868984 8r0b:B1 (4.4) BS02 rna ? GO:0000245 ... O75533 38778104
    868985 8r0b:B2 (4.4) BS01 rna ? GO:0000387 ... Q13435 38778104
    868986 8r0b:B6 (4.4) BS01 rna ? GO:0000387 ... Q9Y3B4 38778104
    868987 8r0b:D (4.4) BS01 rna ? GO:0000245 ... P83876 38778104
    868988 8r0b:D (4.4) BS02 rna ? GO:0000245 ... P83876 38778104
    868989 8r0b:E (4.4) BS01 rna ? GO:0000244 ... Q96DI7 38778104
    868990 8r0b:J (4.4) BS01 rna ? GO:0000244 ... O43395 38778104
    868991 8r0b:L (4.4) BS01 rna ? GO:0000244 ... Q8WWY3 38778104
    868992 8r0b:L (4.4) BS02 rna ? GO:0000244 ... Q8WWY3 38778104
    868993 8r0b:M (4.4) BS01 rna ? GO:0000244 ... P55769 38778104
    868994 8r0b:N (4.4) BS01 rna ? GO:0000244 ... O94906 38778104
    868995 8r0h:A (1.88) BS01 peptide N/A GO:0004672 ... P11309 N/A
    868996 8r0h:A (1.88) BS02 8UB N/A GO:0004672 ... P11309 N/A
    868997 8r0i:A (1.51) BS01 XG7 2.3.1.179 GO:0004315 ... G3XDA2 38665834
    868998 8r0i:B (1.51) BS01 XG7 2.3.1.179 GO:0004315 ... G3XDA2 38665834
    868999 8r0j:C (2.4) BS01 XFZ ? GO:0015031 ... Q96QK1 38487369
    869000 8r0k:A (2.94) BS01 RET N/A GO:0016020 ... A0A1I3DJQ0 40614199

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).