SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    868801 8roj:A (3.0) BS01 ADP N/A GO:0005524 ... Q9UQE7 39240714
    868802 8rok:A (2.25) BS01 AGS N/A GO:0005524 ... Q9UQE7 39240714
    868803 8rok:A (2.25) BS02 AGS N/A GO:0005524 ... Q9UQE7 39240714
    868804 8rok:C (2.25) BS01 AGS N/A GO:0005524 ... Q9UQE7 39240714
    868805 8rok:C (2.25) BS02 AGS N/A GO:0005524 ... Q9UQE7 39240714
    868806 8rol:A (3.11) BS01 AGS N/A GO:0005524 ... Q9UQE7 39240714
    868807 8rom:A (1.69) BS01 FAD 2.7.7.2 GO:0003824 ... Q8NFF5 38688286
    868808 8roo:A (1.4) BS01 peptide ? N/A S6AU73 38737448
    868809 8roo:A (1.4) BS02 MG ? N/A S6AU73 38737448
    868810 8rop:A (1.15) BS01 peptide ? N/A S6AU73 38737448
    868811 8ros:AAA (1.553) BS01 FMN N/A N/A Q9NVS9 N/A
    868812 8ros:AAA (1.553) BS02 A1H16 N/A N/A Q9NVS9 N/A
    868813 8rou:A (1.08) BS01 ZN N/A N/A P00918 N/A
    868814 8rou:A (1.08) BS02 A1H15 N/A N/A P00918 N/A
    868815 8rov:A (2.36) BS01 CA N/A N/A Q6EIG7 39361900
    868816 8rov:A (2.36) BS02 CA N/A N/A Q6EIG7 39361900
    868817 8rov:A (2.36) BS03 MMA N/A N/A Q6EIG7 39361900
    868818 8rov:B (2.36) BS01 CA N/A N/A Q6EIG7 39361900
    868819 8rov:B (2.36) BS02 CA N/A N/A Q6EIG7 39361900
    868820 8rov:B (2.36) BS03 MMA N/A N/A Q6EIG7 39361900
    868821 8row:A (1.05) BS01 ZN N/A N/A P00918 N/A
    868822 8row:A (1.05) BS02 A1H15 N/A N/A P00918 N/A
    868823 8row:A (1.05) BS03 A1H15 N/A N/A P00918 N/A
    868824 8rox:A (3.3) BS01 A1H17 ? GO:0000209 ... Q66K64 38513086
    868825 8roy:A (3.1) BS01 A1H18 ? GO:0000209 ... Q66K64 38513086
    868826 8rp0:AAA (1.64) BS01 GLU N/A N/A P00903 N/A
    868827 8rp0:CCC (1.64) BS01 ISJ N/A N/A P05041 N/A
    868828 8rp0:CCC (1.64) BS02 TRP N/A N/A P05041 N/A
    868829 8rp0:CCC (1.64) BS03 MG N/A N/A P05041 N/A
    868830 8rp0:DDD (1.64) BS01 GLU N/A N/A P05041 N/A
    868831 8rp0:DDD (1.64) BS02 ISJ N/A N/A P05041 N/A
    868832 8rp0:DDD (1.64) BS03 TRP N/A N/A P05041 N/A
    868833 8rp0:DDD (1.64) BS04 MG N/A N/A P05041 N/A
    868834 8rp1:AAA (1.86) BS01 GLU N/A N/A P00903 N/A
    868835 8rp1:CCC (1.86) BS01 TRP N/A N/A P05041 N/A
    868836 8rp1:CCC (1.86) BS02 MG N/A N/A P05041 N/A
    868837 8rp1:DDD (1.86) BS01 GLU N/A N/A P05041 N/A
    868838 8rp1:DDD (1.86) BS02 TRP N/A N/A P05041 N/A
    868839 8rp2:CCC (1.98) BS01 TRP N/A N/A P05041 N/A
    868840 8rp2:CCC (1.98) BS02 MG N/A N/A P05041 N/A
    868841 8rp2:DDD (1.98) BS01 TRP N/A N/A P05041 N/A
    868842 8rp2:DDD (1.98) BS02 MG N/A N/A P05041 N/A
    868843 8rp6:AAA (2.45) BS01 ZN N/A N/A P00903 N/A
    868844 8rp6:BBB (2.45) BS01 ZN N/A N/A P00903 N/A
    868845 8rp6:CCC (2.45) BS01 TRP N/A N/A P05041 N/A
    868846 8rp6:DDD (2.45) BS01 TRP N/A N/A P05041 N/A
    868847 8rpa:A (2.261) BS01 AP5 N/A N/A A0A1D6E5Z5 N/A
    868848 8rpc:A (2.079) BS01 A1H19 N/A GO:0004674 ... W7JM86 39441986
    868849 8rpf:A (2.0) BS01 1BO N/A N/A N/A 39470785
    868850 8rpf:A (2.0) BS02 1BO N/A N/A N/A 39470785
    868851 8rpf:A (2.0) BS03 FAD N/A N/A N/A 39470785
    868852 8rpf:B (2.0) BS01 FAD N/A N/A N/A 39470785
    868853 8rpg:A (2.0) BS01 FAD N/A N/A N/A 39470785
    868854 8rph:A (2.96) BS01 FAD N/A GO:0000287 ... N/A 38874074
    868855 8rph:A (2.96) BS02 MG N/A GO:0000287 ... N/A 38874074
    868856 8rph:A (2.96) BS03 A1H2A N/A GO:0000287 ... N/A 38874074
    868857 8rph:B (2.96) BS01 FAD N/A GO:0000287 ... N/A 38874074
    868858 8rph:B (2.96) BS02 MG N/A GO:0000287 ... N/A 38874074
    868859 8rph:B (2.96) BS03 A1H2A N/A GO:0000287 ... N/A 38874074
    868860 8rph:C (2.96) BS01 FAD N/A GO:0000287 ... N/A 38874074
    868861 8rph:C (2.96) BS02 MG N/A GO:0000287 ... N/A 38874074
    868862 8rph:C (2.96) BS03 A1H2A N/A GO:0000287 ... N/A 38874074
    868863 8rph:C (2.96) BS04 A1H2A N/A GO:0000287 ... N/A 38874074
    868864 8rph:D (2.96) BS01 A1H2A N/A GO:0000287 ... N/A 38874074
    868865 8rph:D (2.96) BS02 FAD N/A GO:0000287 ... N/A 38874074
    868866 8rph:D (2.96) BS03 MG N/A GO:0000287 ... N/A 38874074
    868867 8rph:D (2.96) BS04 A1H2A N/A GO:0000287 ... N/A 38874074
    868868 8rph:E (2.96) BS01 FAD N/A GO:0000287 ... N/A 38874074
    868869 8rph:E (2.96) BS02 MG N/A GO:0000287 ... N/A 38874074
    868870 8rph:E (2.96) BS03 A1H2A N/A GO:0000287 ... N/A 38874074
    868871 8rph:F (2.96) BS01 FAD N/A GO:0000287 ... N/A 38874074
    868872 8rph:F (2.96) BS02 MG N/A GO:0000287 ... N/A 38874074
    868873 8rph:F (2.96) BS03 A1H2A N/A GO:0000287 ... N/A 38874074
    868874 8rpi:A (2.71) BS01 FAD N/A GO:0000287 ... N/A 38874074
    868875 8rpi:A (2.71) BS02 MG N/A GO:0000287 ... N/A 38874074
    868876 8rpi:A (2.71) BS03 TDL N/A GO:0000287 ... N/A 38874074
    868877 8rpi:A (2.71) BS04 TDL N/A GO:0000287 ... N/A 38874074
    868878 8rpi:B (2.71) BS01 TDL N/A GO:0000287 ... N/A 38874074
    868879 8rpi:B (2.71) BS02 FAD N/A GO:0000287 ... N/A 38874074
    868880 8rpi:B (2.71) BS03 MG N/A GO:0000287 ... N/A 38874074
    868881 8rpi:B (2.71) BS04 TDL N/A GO:0000287 ... N/A 38874074
    868882 8rpi:C (2.71) BS01 FAD N/A GO:0000287 ... N/A 38874074
    868883 8rpi:C (2.71) BS02 MG N/A GO:0000287 ... N/A 38874074
    868884 8rpi:C (2.71) BS03 TDL N/A GO:0000287 ... N/A 38874074
    868885 8rpi:C (2.71) BS04 TDL N/A GO:0000287 ... N/A 38874074
    868886 8rpi:D (2.71) BS01 FAD N/A GO:0000287 ... N/A 38874074
    868887 8rpi:D (2.71) BS02 MG N/A GO:0000287 ... N/A 38874074
    868888 8rpi:D (2.71) BS03 TDL N/A GO:0000287 ... N/A 38874074
    868889 8rpi:E (2.71) BS01 FAD N/A GO:0000287 ... N/A 38874074
    868890 8rpi:E (2.71) BS02 MG N/A GO:0000287 ... N/A 38874074
    868891 8rpi:E (2.71) BS03 TDL N/A GO:0000287 ... N/A 38874074
    868892 8rpi:E (2.71) BS04 TDL N/A GO:0000287 ... N/A 38874074
    868893 8rpi:F (2.71) BS01 FAD N/A GO:0000287 ... N/A 38874074
    868894 8rpi:F (2.71) BS02 MG N/A GO:0000287 ... N/A 38874074
    868895 8rpi:F (2.71) BS03 TDL N/A GO:0000287 ... N/A 38874074
    868896 8rpj:A (1.9) BS01 TPP N/A GO:0000287 ... N/A 38874074
    868897 8rpj:A (1.9) BS02 FAD N/A GO:0000287 ... N/A 38874074
    868898 8rpj:A (1.9) BS03 MG N/A GO:0000287 ... N/A 38874074
    868899 8rpj:A (1.9) BS04 TPP N/A GO:0000287 ... N/A 38874074
    868900 8rpj:B (1.9) BS01 TPP N/A GO:0000287 ... N/A 38874074
    868901 8rpj:B (1.9) BS02 TPP N/A GO:0000287 ... N/A 38874074
    868902 8rpj:B (1.9) BS03 FAD N/A GO:0000287 ... N/A 38874074
    868903 8rpj:B (1.9) BS04 MG N/A GO:0000287 ... N/A 38874074
    868904 8rpj:C (1.9) BS01 TPP N/A GO:0000287 ... N/A 38874074
    868905 8rpj:C (1.9) BS02 FAD N/A GO:0000287 ... N/A 38874074
    868906 8rpj:C (1.9) BS03 MG N/A GO:0000287 ... N/A 38874074
    868907 8rpj:C (1.9) BS04 TPP N/A GO:0000287 ... N/A 38874074
    868908 8rpj:D (1.9) BS01 TPP N/A GO:0000287 ... N/A 38874074
    868909 8rpj:D (1.9) BS02 FAD N/A GO:0000287 ... N/A 38874074
    868910 8rpj:D (1.9) BS03 MG N/A GO:0000287 ... N/A 38874074
    868911 8rpj:D (1.9) BS04 TPP N/A GO:0000287 ... N/A 38874074
    868912 8rpj:E (1.9) BS01 TPP N/A GO:0000287 ... N/A 38874074
    868913 8rpj:E (1.9) BS02 TPP N/A GO:0000287 ... N/A 38874074
    868914 8rpj:E (1.9) BS03 FAD N/A GO:0000287 ... N/A 38874074
    868915 8rpj:E (1.9) BS04 MG N/A GO:0000287 ... N/A 38874074
    868916 8rpj:F (1.9) BS01 TPP N/A GO:0000287 ... N/A 38874074
    868917 8rpj:F (1.9) BS02 TPP N/A GO:0000287 ... N/A 38874074
    868918 8rpj:F (1.9) BS03 FAD N/A GO:0000287 ... N/A 38874074
    868919 8rpj:F (1.9) BS04 MG N/A GO:0000287 ... N/A 38874074
    868920 8rpk:A (2.615) BS01 MG N/A GO:0003987 ... A0A535FEC2 39019872
    868921 8rpk:B (2.615) BS01 MG N/A GO:0003987 ... A0A535FEC2 39019872
    868922 8rpk:C (2.615) BS01 MG N/A GO:0003987 ... A0A535FEC2 39019872
    868923 8rpk:D (2.615) BS01 MG N/A GO:0003987 ... A0A535FEC2 39019872
    868924 8rpl:A (2.37) BS01 6R9 N/A GO:0003987 ... A0A535FEC2 39019872
    868925 8rpl:A (2.37) BS02 MG N/A GO:0003987 ... A0A535FEC2 39019872
    868926 8rpl:B (2.37) BS01 6R9 N/A GO:0003987 ... A0A535FEC2 39019872
    868927 8rpl:B (2.37) BS02 MG N/A GO:0003987 ... A0A535FEC2 39019872
    868928 8rpl:C (2.37) BS01 6R9 N/A GO:0003987 ... A0A535FEC2 39019872
    868929 8rpl:C (2.37) BS02 MG N/A GO:0003987 ... A0A535FEC2 39019872
    868930 8rpl:D (2.37) BS01 6R9 N/A GO:0003987 ... A0A535FEC2 39019872
    868931 8rpo:A (1.791) BS01 A1H2C N/A GO:0042981 ... Q16548 38894895
    868932 8rpr:A (2.14) BS01 COI N/A GO:0008168 ... R9UTR3 38887142
    868933 8rpr:A (2.14) BS02 MG N/A GO:0008168 ... R9UTR3 38887142
    868934 8rpr:A (2.14) BS03 MG N/A GO:0008168 ... R9UTR3 38887142
    868935 8rpr:A (2.14) BS04 ZN N/A GO:0008168 ... R9UTR3 38887142
    868936 8rps:A (1.75) BS01 5HU N/A N/A O43598 38350003
    868937 8rps:B (1.75) BS01 5HU N/A N/A O43598 38350003
    868938 8rps:C (1.75) BS01 5HU N/A N/A O43598 38350003
    868939 8rpx:A (1.81) BS01 dna N/A GO:0046872 ... I4EG67 39041409
    868940 8rpx:A (1.81) BS02 dna N/A GO:0046872 ... I4EG67 39041409
    868941 8rpx:A (1.81) BS03 CA N/A GO:0046872 ... I4EG67 39041409
    868942 8rpx:B (1.81) BS01 dna N/A GO:0046872 ... I4EG67 39041409
    868943 8rpx:B (1.81) BS02 dna N/A GO:0046872 ... I4EG67 39041409
    868944 8rpx:B (1.81) BS03 dna N/A GO:0046872 ... I4EG67 39041409
    868945 8rpx:B (1.81) BS04 CA N/A GO:0046872 ... I4EG67 39041409
    868946 8rpx:C (1.81) BS01 dna N/A GO:0046872 ... I4EG67 39041409
    868947 8rpx:C (1.81) BS02 dna N/A GO:0046872 ... I4EG67 39041409
    868948 8rpx:C (1.81) BS03 CA N/A GO:0046872 ... I4EG67 39041409
    868949 8rpx:D (1.81) BS01 dna N/A GO:0046872 ... I4EG67 39041409
    868950 8rpx:D (1.81) BS02 dna N/A GO:0046872 ... I4EG67 39041409
    868951 8rpx:D (1.81) BS03 dna N/A GO:0046872 ... I4EG67 39041409
    868952 8rpx:D (1.81) BS04 CA N/A GO:0046872 ... I4EG67 39041409
    868953 8rpx:E (1.81) BS01 dna N/A GO:0046872 ... I4EG67 39041409
    868954 8rpx:E (1.81) BS02 dna N/A GO:0046872 ... I4EG67 39041409
    868955 8rpx:E (1.81) BS03 CA N/A GO:0046872 ... I4EG67 39041409
    868956 8rpy:0 (2.64) BS01 rna ? GO:0000027 ... P0A7N4 38730238
    868957 8rpy:1 (2.64) BS01 rna ? GO:0000027 ... P0A7N9 38730238
    868958 8rpy:2 (2.64) BS01 rna ? GO:0002181 ... P0A7P5 38730238
    868959 8rpy:3 (2.64) BS01 rna ? GO:0002181 ... P0A7Q1 38730238
    868960 8rpy:4 (2.64) BS01 rna ? GO:0002181 ... P0A7Q6 38730238
    868961 8rpy:6 (2.64) BS01 rna ? GO:0002181 ... P0A7M9 38730238
    868962 8rpy:C (2.64) BS01 rna ? GO:0000027 ... P60422 38730238
    868963 8rpy:D (2.64) BS01 rna ? GO:0000027 ... P60438 38730238
    868964 8rpy:E (2.64) BS01 rna ? GO:0001070 ... P60723 38730238
    868965 8rpy:E (2.64) BS02 peptide ? GO:0001070 ... P60723 38730238
    868966 8rpy:F (2.64) BS01 rna ? GO:0000027 ... P62399 38730238
    868967 8rpy:F (2.64) BS02 rna ? GO:0000027 ... P62399 38730238
    868968 8rpy:G (2.64) BS01 rna ? GO:0000027 ... P0AG55 38730238
    868969 8rpy:H (2.64) BS01 rna ? GO:0002181 ... P0A7R1 38730238
    868970 8rpy:J (2.64) BS01 rna ? GO:0002181 ... P0AA10 38730238
    868971 8rpy:K (2.64) BS01 rna ? GO:0002181 ... P0ADY3 38730238
    868972 8rpy:L (2.64) BS01 rna ? GO:0002181 ... P02413 38730238
    868973 8rpy:M (2.64) BS01 rna ? GO:0000027 ... P0ADY7 38730238
    868974 8rpy:M (2.64) BS02 rna ? GO:0000027 ... P0ADY7 38730238
    868975 8rpy:N (2.64) BS01 rna ? GO:0000027 ... P0AG44 38730238
    868976 8rpy:O (2.64) BS01 rna ? GO:0002181 ... P0C018 38730238
    868977 8rpy:O (2.64) BS02 rna ? GO:0002181 ... P0C018 38730238
    868978 8rpy:P (2.64) BS01 rna ? GO:0000027 ... P0A7K6 38730238
    868979 8rpy:Q (2.64) BS01 rna ? GO:0000027 ... P0A7L3 38730238
    868980 8rpy:R (2.64) BS01 rna ? GO:0002181 ... P0AG48 38730238
    868981 8rpy:S (2.64) BS01 rna ? GO:0002181 ... P61175 38730238
    868982 8rpy:T (2.64) BS01 rna ? GO:0000027 ... P0ADZ0 38730238
    868983 8rpy:U (2.64) BS01 rna ? GO:0000027 ... P60624 38730238
    868984 8rpy:V (2.64) BS01 rna ? GO:0000027 ... P68919 38730238
    868985 8rpy:V (2.64) BS02 rna ? GO:0000027 ... P68919 38730238
    868986 8rpy:W (2.64) BS01 rna ? GO:0003735 ... P0A7L8 38730238
    868987 8rpy:W (2.64) BS02 rna ? GO:0003735 ... P0A7L8 38730238
    868988 8rpy:X (2.64) BS01 rna ? GO:0000027 ... P0A7M2 38730238
    868989 8rpy:Y (2.64) BS01 rna ? GO:0000027 ... P0A7M6 38730238
    868990 8rpy:Z (2.64) BS01 rna ? GO:0000027 ... P0AG51 38730238
    868991 8rpz:0 (2.44) BS01 rna ? GO:0000027 ... P0A7N4 38730238
    868992 8rpz:1 (2.44) BS01 rna ? GO:0000027 ... P0A7N9 38730238
    868993 8rpz:2 (2.44) BS01 rna ? GO:0002181 ... P0A7P5 38730238
    868994 8rpz:3 (2.44) BS01 rna ? GO:0002181 ... P0A7Q1 38730238
    868995 8rpz:4 (2.44) BS01 rna ? GO:0002181 ... P0A7Q6 38730238
    868996 8rpz:6 (2.44) BS01 rna ? GO:0002181 ... P0A7M9 38730238
    868997 8rpz:C (2.44) BS01 rna ? GO:0000027 ... P60422 38730238
    868998 8rpz:D (2.44) BS01 rna ? GO:0000027 ... P60438 38730238
    868999 8rpz:E (2.44) BS01 rna ? GO:0001070 ... P60723 38730238
    869000 8rpz:E (2.44) BS02 peptide ? GO:0001070 ... P60723 38730238

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).