SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    869201 8rqw:A (1.8) BS01 ANP N/A N/A P63086 N/A
    869202 8rqx:A (1.7) BS01 ANP N/A N/A P63086 N/A
    869203 8rr1:C (2.93) BS01 rna N/A N/A Q99714 39747487
    869204 8rr1:E (2.93) BS01 rna N/A N/A Q9BQ52 39747487
    869205 8rr1:E (2.93) BS02 ZN N/A N/A Q9BQ52 39747487
    869206 8rr1:E (2.93) BS03 ZN N/A N/A Q9BQ52 39747487
    869207 8rr1:F (2.93) BS01 rna N/A N/A Q7L0Y3 39747487
    869208 8rr1:F (2.93) BS02 SAH N/A N/A Q7L0Y3 39747487
    869209 8rr2:A (1.74) BS01 CA N/A GO:0005886 ... Q8A5T1 39041709
    869210 8rr2:A (1.74) BS02 A1H2X N/A GO:0005886 ... Q8A5T1 39041709
    869211 8rr2:B (1.74) BS01 CA N/A GO:0005886 ... Q8A5T1 39041709
    869212 8rr2:B (1.74) BS02 A1H2X N/A GO:0005886 ... Q8A5T1 39041709
    869213 8rr3:C (3.4) BS01 rna N/A N/A Q99714 39747487
    869214 8rr3:E (3.4) BS01 rna N/A N/A Q9BQ52 39747487
    869215 8rr3:E (3.4) BS02 ZN N/A N/A Q9BQ52 39747487
    869216 8rr3:E (3.4) BS03 ZN N/A N/A Q9BQ52 39747487
    869217 8rr3:F (3.4) BS01 rna N/A N/A Q7L0Y3 39747487
    869218 8rr3:F (3.4) BS02 SAH N/A N/A Q7L0Y3 39747487
    869219 8rr4:C (3.2) BS01 rna N/A N/A Q99714 39747487
    869220 8rr4:E (3.2) BS01 rna N/A N/A Q9BQ52 39747487
    869221 8rr4:E (3.2) BS02 ZN N/A N/A Q9BQ52 39747487
    869222 8rr4:E (3.2) BS03 ZN N/A N/A Q9BQ52 39747487
    869223 8rr4:F (3.2) BS01 rna N/A N/A Q7L0Y3 39747487
    869224 8rr4:F (3.2) BS02 SAH N/A N/A Q7L0Y3 39747487
    869225 8rr7:A (1.6) BS01 A1H2T N/A N/A P17931 N/A
    869226 8rr8:A (1.5) BS01 A1H2S N/A N/A P17931 N/A
    869227 8rr9:A (1.25) BS01 A1H2R N/A N/A P17931 N/A
    869228 8rra:A (1.3) BS01 A1H2Q N/A N/A P17931 N/A
    869229 8rrb:A (1.2) BS01 A1H2P N/A N/A P17931 N/A
    869230 8rrc:A (1.5) BS01 A1H2O N/A N/A P17931 N/A
    869231 8rre:A (1.208) BS01 A1H2N N/A N/A P17931 N/A
    869232 8rrf:A (1.25) BS01 A1H2M N/A N/A P17931 N/A
    869233 8rrg:A (1.4) BS01 A1H2L N/A N/A P17931 N/A
    869234 8rrk:A (1.93) BS01 peptide N/A N/A P31947 N/A
    869235 8rrk:B (1.93) BS01 peptide N/A N/A P31947 N/A
    869236 8rrl:A (2.15) BS01 peptide N/A N/A P31947 N/A
    869237 8rrl:B (2.15) BS01 peptide N/A N/A P31947 N/A
    869238 8rrm:A (2.0) BS01 peptide N/A N/A P31947 N/A
    869239 8rrm:A (2.0) BS02 FSC N/A N/A P31947 N/A
    869240 8rrm:B (2.0) BS01 peptide N/A N/A P31947 N/A
    869241 8rrm:B (2.0) BS02 FSC N/A N/A P31947 N/A
    869242 8rro:B (3.5) BS01 peptide N/A N/A P01850 39030753
    869243 8rro:C (3.5) BS01 peptide N/A N/A P04439 39030753
    869244 8rro:G (3.5) BS01 peptide N/A N/A P01850 39030753
    869245 8rro:H (3.5) BS01 peptide N/A N/A P04439 39030753
    869246 8rro:L (3.5) BS01 peptide N/A N/A P01850 39030753
    869247 8rro:M (3.5) BS01 peptide N/A N/A P04439 39030753
    869248 8rro:Q (3.5) BS01 peptide N/A N/A P01850 39030753
    869249 8rro:R (3.5) BS01 peptide N/A N/A P04439 39030753
    869250 8rro:V (3.5) BS01 peptide N/A N/A P01850 39030753
    869251 8rro:W (3.5) BS01 peptide N/A N/A P04439 39030753
    869252 8rro:a (3.5) BS01 peptide N/A N/A P01850 39030753
    869253 8rro:b (3.5) BS01 peptide N/A N/A P04439 39030753
    869254 8rro:f (3.5) BS01 peptide N/A N/A P01850 39030753
    869255 8rro:g (3.5) BS01 peptide N/A N/A P04439 39030753
    869256 8rro:k (3.5) BS01 peptide N/A N/A P01850 39030753
    869257 8rro:l (3.5) BS01 peptide N/A N/A P04439 39030753
    869258 8rrq:A (1.6) BS01 A1H2W 2.7.10.2 GO:0004672 ... P43405 38604095
    869259 8rrs:A (3.4) BS01 ATP N/A GO:0001666 ... E9Q401 39233227
    869260 8rrs:A (3.4) BS02 CFF N/A GO:0001666 ... E9Q401 39233227
    869261 8rrs:A (3.4) BS03 ZN N/A GO:0001666 ... E9Q401 39233227
    869262 8rrs:A (3.4) BS04 CA N/A GO:0001666 ... E9Q401 39233227
    869263 8rrs:C (3.4) BS01 ATP N/A GO:0001666 ... E9Q401 39233227
    869264 8rrs:C (3.4) BS02 CFF N/A GO:0001666 ... E9Q401 39233227
    869265 8rrs:C (3.4) BS03 ZN N/A GO:0001666 ... E9Q401 39233227
    869266 8rrs:C (3.4) BS04 CA N/A GO:0001666 ... E9Q401 39233227
    869267 8rrs:E (3.4) BS01 ATP N/A GO:0001666 ... E9Q401 39233227
    869268 8rrs:E (3.4) BS02 CFF N/A GO:0001666 ... E9Q401 39233227
    869269 8rrs:E (3.4) BS03 ZN N/A GO:0001666 ... E9Q401 39233227
    869270 8rrs:E (3.4) BS04 CA N/A GO:0001666 ... E9Q401 39233227
    869271 8rrs:F (3.4) BS01 ATP N/A GO:0001666 ... E9Q401 39233227
    869272 8rrs:F (3.4) BS02 CFF N/A GO:0001666 ... E9Q401 39233227
    869273 8rrs:F (3.4) BS03 ZN N/A GO:0001666 ... E9Q401 39233227
    869274 8rrs:F (3.4) BS04 CA N/A GO:0001666 ... E9Q401 39233227
    869275 8rrt:B (4.6) BS01 ZN N/A GO:0003151 ... P11716 39233227
    869276 8rrt:B (4.6) BS02 ATP N/A GO:0003151 ... P11716 39233227
    869277 8rrt:B (4.6) BS03 CFF N/A GO:0003151 ... P11716 39233227
    869278 8rrt:B (4.6) BS04 CA N/A GO:0003151 ... P11716 39233227
    869279 8rrt:E (4.6) BS01 ZN N/A GO:0003151 ... P11716 39233227
    869280 8rrt:E (4.6) BS02 ATP N/A GO:0003151 ... P11716 39233227
    869281 8rrt:E (4.6) BS03 CFF N/A GO:0003151 ... P11716 39233227
    869282 8rrt:E (4.6) BS04 CA N/A GO:0003151 ... P11716 39233227
    869283 8rrt:G (4.6) BS01 ZN N/A GO:0003151 ... P11716 39233227
    869284 8rrt:G (4.6) BS02 ATP N/A GO:0003151 ... P11716 39233227
    869285 8rrt:G (4.6) BS03 CFF N/A GO:0003151 ... P11716 39233227
    869286 8rrt:G (4.6) BS04 CA N/A GO:0003151 ... P11716 39233227
    869287 8rrt:J (4.6) BS01 ZN N/A GO:0003151 ... P11716 39233227
    869288 8rrt:J (4.6) BS02 ATP N/A GO:0003151 ... P11716 39233227
    869289 8rrt:J (4.6) BS03 CFF N/A GO:0003151 ... P11716 39233227
    869290 8rrt:J (4.6) BS04 CA N/A GO:0003151 ... P11716 39233227
    869291 8rru:B (4.7) BS01 ZN N/A GO:0003151 ... P11716 39233227
    869292 8rru:B (4.7) BS02 ATP N/A GO:0003151 ... P11716 39233227
    869293 8rru:B (4.7) BS03 CFF N/A GO:0003151 ... P11716 39233227
    869294 8rru:B (4.7) BS04 CA N/A GO:0003151 ... P11716 39233227
    869295 8rru:E (4.7) BS01 ZN N/A GO:0003151 ... P11716 39233227
    869296 8rru:E (4.7) BS02 ATP N/A GO:0003151 ... P11716 39233227
    869297 8rru:E (4.7) BS03 CFF N/A GO:0003151 ... P11716 39233227
    869298 8rru:E (4.7) BS04 CA N/A GO:0003151 ... P11716 39233227
    869299 8rru:G (4.7) BS01 ZN N/A GO:0003151 ... P11716 39233227
    869300 8rru:G (4.7) BS02 ATP N/A GO:0003151 ... P11716 39233227
    869301 8rru:G (4.7) BS03 CFF N/A GO:0003151 ... P11716 39233227
    869302 8rru:G (4.7) BS04 CA N/A GO:0003151 ... P11716 39233227
    869303 8rru:J (4.7) BS01 ZN N/A GO:0003151 ... P11716 39233227
    869304 8rru:J (4.7) BS02 ATP N/A GO:0003151 ... P11716 39233227
    869305 8rru:J (4.7) BS03 CFF N/A GO:0003151 ... P11716 39233227
    869306 8rru:J (4.7) BS04 CA N/A GO:0003151 ... P11716 39233227
    869307 8rrv:B (3.2) BS01 ZN N/A GO:0003151 ... P11716 39233227
    869308 8rrv:E (3.2) BS01 ZN N/A GO:0003151 ... P11716 39233227
    869309 8rrv:G (3.2) BS01 ZN N/A GO:0003151 ... P11716 39233227
    869310 8rrv:J (3.2) BS01 ZN N/A GO:0003151 ... P11716 39233227
    869311 8rrw:B (4.2) BS01 ZN N/A GO:0003151 ... P11716 39233227
    869312 8rrw:B (4.2) BS02 ATP N/A GO:0003151 ... P11716 39233227
    869313 8rrw:B (4.2) BS03 CFF N/A GO:0003151 ... P11716 39233227
    869314 8rrw:B (4.2) BS04 CA N/A GO:0003151 ... P11716 39233227
    869315 8rrw:E (4.2) BS01 ZN N/A GO:0003151 ... P11716 39233227
    869316 8rrw:E (4.2) BS02 ATP N/A GO:0003151 ... P11716 39233227
    869317 8rrw:E (4.2) BS03 CFF N/A GO:0003151 ... P11716 39233227
    869318 8rrw:E (4.2) BS04 CA N/A GO:0003151 ... P11716 39233227
    869319 8rrw:G (4.2) BS01 ZN N/A GO:0003151 ... P11716 39233227
    869320 8rrw:G (4.2) BS02 ATP N/A GO:0003151 ... P11716 39233227
    869321 8rrw:G (4.2) BS03 CFF N/A GO:0003151 ... P11716 39233227
    869322 8rrw:G (4.2) BS04 CA N/A GO:0003151 ... P11716 39233227
    869323 8rrw:J (4.2) BS01 ZN N/A GO:0003151 ... P11716 39233227
    869324 8rrw:J (4.2) BS02 ATP N/A GO:0003151 ... P11716 39233227
    869325 8rrw:J (4.2) BS03 CFF N/A GO:0003151 ... P11716 39233227
    869326 8rrw:J (4.2) BS04 CA N/A GO:0003151 ... P11716 39233227
    869327 8rrx:A (3.1) BS01 ZN N/A GO:0003151 ... P11716 39233227
    869328 8rrx:A (3.1) BS02 ATP N/A GO:0003151 ... P11716 39233227
    869329 8rrx:A (3.1) BS03 CFF N/A GO:0003151 ... P11716 39233227
    869330 8rrx:A (3.1) BS04 CA N/A GO:0003151 ... P11716 39233227
    869331 8rrx:D (3.1) BS01 ZN N/A GO:0003151 ... P11716 39233227
    869332 8rrx:D (3.1) BS02 ATP N/A GO:0003151 ... P11716 39233227
    869333 8rrx:D (3.1) BS03 CFF N/A GO:0003151 ... P11716 39233227
    869334 8rrx:D (3.1) BS04 CA N/A GO:0003151 ... P11716 39233227
    869335 8rrx:G (3.1) BS01 ZN N/A GO:0003151 ... P11716 39233227
    869336 8rrx:G (3.1) BS02 ATP N/A GO:0003151 ... P11716 39233227
    869337 8rrx:G (3.1) BS03 CFF N/A GO:0003151 ... P11716 39233227
    869338 8rrx:G (3.1) BS04 CA N/A GO:0003151 ... P11716 39233227
    869339 8rrx:I (3.1) BS01 ZN N/A GO:0003151 ... P11716 39233227
    869340 8rrx:I (3.1) BS02 ATP N/A GO:0003151 ... P11716 39233227
    869341 8rrx:I (3.1) BS03 CFF N/A GO:0003151 ... P11716 39233227
    869342 8rrx:I (3.1) BS04 CA N/A GO:0003151 ... P11716 39233227
    869343 8rry:A (1.45561) BS01 CU ? GO:0000272 ... P9WEM3 38814816
    869344 8rry:B (1.45561) BS01 CU ? GO:0000272 ... P9WEM3 38814816
    869345 8rrz:A (1.75) BS01 A1H2Y 2.7.10.2 GO:0004672 ... P43405 38604095
    869346 8rs0:B (3.3) BS01 ZN N/A GO:0003151 ... P11716 39233227
    869347 8rs0:B (3.3) BS02 ATP N/A GO:0003151 ... P11716 39233227
    869348 8rs0:B (3.3) BS03 CFF N/A GO:0003151 ... P11716 39233227
    869349 8rs0:B (3.3) BS04 CA N/A GO:0003151 ... P11716 39233227
    869350 8rs0:E (3.3) BS01 ZN N/A GO:0003151 ... P11716 39233227
    869351 8rs0:E (3.3) BS02 ATP N/A GO:0003151 ... P11716 39233227
    869352 8rs0:E (3.3) BS03 CFF N/A GO:0003151 ... P11716 39233227
    869353 8rs0:E (3.3) BS04 CA N/A GO:0003151 ... P11716 39233227
    869354 8rs0:G (3.3) BS01 ZN N/A GO:0003151 ... P11716 39233227
    869355 8rs0:G (3.3) BS02 ATP N/A GO:0003151 ... P11716 39233227
    869356 8rs0:G (3.3) BS03 CFF N/A GO:0003151 ... P11716 39233227
    869357 8rs0:G (3.3) BS04 CA N/A GO:0003151 ... P11716 39233227
    869358 8rs0:J (3.3) BS01 ZN N/A GO:0003151 ... P11716 39233227
    869359 8rs0:J (3.3) BS02 ATP N/A GO:0003151 ... P11716 39233227
    869360 8rs0:J (3.3) BS03 CFF N/A GO:0003151 ... P11716 39233227
    869361 8rs0:J (3.3) BS04 CA N/A GO:0003151 ... P11716 39233227
    869362 8rs5:A (1.95) BS01 NDP N/A GO:0003824 ... Q8TWG5 39834309
    869363 8rs5:B (1.95) BS01 NDP N/A GO:0003824 ... Q8TWG5 39834309
    869364 8rsa:A (1.8) BS01 ADT 4.6.1.18 GO:0003676 ... P61823 2340284
    869365 8rsa:B (1.8) BS01 ADT 4.6.1.18 GO:0003676 ... P61823 2340284
    869366 8rsb:A (3.4) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 38947518
    869367 8rsb:A (3.4) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 38947518
    869368 8rsb:B (3.4) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 38947518
    869369 8rsb:B (3.4) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 38947518
    869370 8rsb:C (3.4) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 38947518
    869371 8rsb:C (3.4) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 38947518
    869372 8rsb:D (3.4) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 38947518
    869373 8rsb:D (3.4) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 38947518
    869374 8rsb:E (3.4) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 38947518
    869375 8rsb:E (3.4) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 38947518
    869376 8rsb:F (3.4) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 38947518
    869377 8rsb:F (3.4) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 38947518
    869378 8rsc:A (3.6) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 38947518
    869379 8rsc:B (3.6) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 38947518
    869380 8rsc:C (3.6) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 38947518
    869381 8rsc:C (3.6) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 38947518
    869382 8rsc:D (3.6) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 38947518
    869383 8rsc:D (3.6) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 38947518
    869384 8rsc:E (3.6) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 38947518
    869385 8rsc:E (3.6) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 38947518
    869386 8rsc:F (3.6) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 38947518
    869387 8rsc:F (3.6) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 38947518
    869388 8rse:A (1.66) BS01 CA N/A N/A P06873 N/A
    869389 8rsf:A (1.66) BS01 CA N/A N/A P06873 N/A
    869390 8rsg:A (1.66) BS01 CA N/A N/A P06873 N/A
    869391 8rsi:A (2.059) BS01 ZN N/A GO:0016787 ... A0A166ACJ5 39270823
    869392 8rsi:A (2.059) BS02 GLU N/A GO:0016787 ... A0A166ACJ5 39270823
    869393 8rsi:B (2.059) BS01 ZN N/A GO:0016787 ... A0A166ACJ5 39270823
    869394 8rsi:B (2.059) BS02 GLU N/A GO:0016787 ... A0A166ACJ5 39270823
    869395 8rsj:A (1.66) BS01 ZN N/A GO:0016787 ... A0A166ACJ5 39270823
    869396 8rsj:A (1.66) BS02 JNT N/A GO:0016787 ... A0A166ACJ5 39270823
    869397 8rsj:B (1.66) BS01 ZN N/A GO:0016787 ... A0A166ACJ5 39270823
    869398 8rsj:B (1.66) BS02 JNT N/A GO:0016787 ... A0A166ACJ5 39270823
    869399 8rsk:A (2.359) BS01 ZN N/A GO:0016787 ... A0A166ACJ5 39270823
    869400 8rsk:A (2.359) BS02 ZN N/A GO:0016787 ... A0A166ACJ5 39270823

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).