SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    869801 8rvw:A (2.65) BS03 CLR N/A N/A P29274 39738009
    869802 8rvw:A (2.65) BS04 CLR N/A N/A P29274 39738009
    869803 8rw0:A (1.94) BS01 JQ9 N/A N/A P0ABE7
    P29274
    39738009
    869804 8rw0:A (1.94) BS02 CLR N/A N/A P0ABE7
    P29274
    39738009
    869805 8rw0:A (1.94) BS03 CLR N/A N/A P0ABE7
    P29274
    39738009
    869806 8rw1:A (3.35) BS01 rna N/A GO:0000028 ... Q6CN12 39193907
    869807 8rw1:B (3.35) BS01 rna N/A GO:0003735 ... Q6CWD0 39193907
    869808 8rw1:C (3.35) BS01 rna N/A GO:0003723 ... Q6CKL3 39193907
    869809 8rw1:D (3.35) BS01 rna N/A GO:0003723 ... Q6CRK7 39193907
    869810 8rw1:D (3.35) BS02 rna N/A GO:0003723 ... Q6CRK7 39193907
    869811 8rw1:E (3.35) BS01 rna N/A GO:0003723 ... Q6CWJ2 39193907
    869812 8rw1:F (3.35) BS01 rna N/A GO:0003723 ... Q6CRA3 39193907
    869813 8rw1:G (3.35) BS01 rna N/A GO:0003735 ... Q6CM04 39193907
    869814 8rw1:H (3.35) BS01 rna N/A GO:0003735 ... Q6CTD6 39193907
    869815 8rw1:I (3.35) BS01 rna N/A GO:0003735 ... Q6CMG3 39193907
    869816 8rw1:J (3.35) BS01 rna N/A GO:0003723 ... Q6CM18 39193907
    869817 8rw1:K (3.35) BS01 rna N/A GO:0003723 ... Q6CVZ5 39193907
    869818 8rw1:L (3.35) BS01 rna N/A GO:0003735 ... Q6CX80 39193907
    869819 8rw1:M (3.35) BS01 rna N/A GO:0003735 ... Q6CLU4 39193907
    869820 8rw1:N (3.35) BS01 rna N/A GO:0003735 ... Q6CJK0 39193907
    869821 8rw1:O (3.35) BS01 rna N/A GO:0003735 ... P27069 39193907
    869822 8rw1:P (3.35) BS01 rna N/A GO:0000028 ... Q6CKV4 39193907
    869823 8rw1:Q (3.35) BS01 rna N/A GO:0000462 ... Q875N2 39193907
    869824 8rw1:R (3.35) BS01 rna N/A GO:0003735 ... Q6CWU3 39193907
    869825 8rw1:S (3.35) BS01 rna N/A GO:0003676 ... Q6CWT9 39193907
    869826 8rw1:T (3.35) BS01 rna N/A GO:0000028 ... Q6CXM0 39193907
    869827 8rw1:U (3.35) BS01 rna N/A GO:0003735 ... Q6CIM1 39193907
    869828 8rw1:V (3.35) BS01 rna N/A GO:0003735 ... Q6CXT6 39193907
    869829 8rw1:W (3.35) BS01 rna N/A GO:0003735 ... Q6CW21 39193907
    869830 8rw1:X (3.35) BS01 rna N/A GO:0003735 ... F2Z602 39193907
    869831 8rw1:Y (3.35) BS01 rna N/A GO:0003735 ... Q6CU44 39193907
    869832 8rw1:Z (3.35) BS01 rna N/A GO:0005840 ... Q6CW78 39193907
    869833 8rw1:a (3.35) BS01 rna N/A GO:0003729 ... Q6CS01 39193907
    869834 8rw1:a (3.35) BS02 rna N/A GO:0003729 ... Q6CS01 39193907
    869835 8rw1:a (3.35) BS03 ZN N/A GO:0003729 ... Q6CS01 39193907
    869836 8rw1:b (3.35) BS01 rna N/A GO:0003735 ... Q6CNL2 39193907
    869837 8rw1:b (3.35) BS02 ZN N/A GO:0003735 ... Q6CNL2 39193907
    869838 8rw1:c (3.35) BS01 rna N/A GO:0000028 ... P33285 39193907
    869839 8rw1:c (3.35) BS02 rna N/A GO:0000028 ... P33285 39193907
    869840 8rw1:d (3.35) BS01 rna N/A GO:0002181 ... Q6CPG3 39193907
    869841 8rw1:e (3.35) BS01 rna N/A GO:0003735 ... Q6CUH5 39193907
    869842 8rw1:f (3.35) BS01 rna N/A GO:0003735 ... P69061 39193907
    869843 8rw1:f (3.35) BS02 ZN N/A GO:0003735 ... P69061 39193907
    869844 8rw1:g (3.35) BS01 rna N/A GO:0006417 ... Q6CNI7 39193907
    869845 8rw1:i (3.35) BS01 rna N/A GO:0001677 ... P38912 39193907
    869846 8rw1:i (3.35) BS02 rna N/A GO:0001677 ... P38912 39193907
    869847 8rw1:j (3.35) BS01 rna N/A GO:0001731 ... P20459 39193907
    869848 8rw1:j (3.35) BS02 rna N/A GO:0001731 ... P20459 39193907
    869849 8rw1:k (3.35) BS01 rna N/A GO:0000049 ... P32481 39193907
    869850 8rw1:k (3.35) BS02 peptide N/A GO:0000049 ... P32481 39193907
    869851 8rw1:k (3.35) BS03 MET N/A GO:0000049 ... P32481 39193907
    869852 8rw3:A (1.9) BS01 GDQ 2.4.1.161 GO:0003824 ... B3PEE6 38623783
    869853 8rw3:B (1.9) BS01 GDQ 2.4.1.161 GO:0003824 ... B3PEE6 38623783
    869854 8rw3:B (1.9) BS02 OXL 2.4.1.161 GO:0003824 ... B3PEE6 38623783
    869855 8rw3:C (1.9) BS01 GDQ 2.4.1.161 GO:0003824 ... B3PEE6 38623783
    869856 8rw4:A (2.2) BS01 A1H3L N/A N/A P0ABE7
    P29274
    39738009
    869857 8rw4:A (2.2) BS02 CLR N/A N/A P0ABE7
    P29274
    39738009
    869858 8rw4:A (2.2) BS03 CLR N/A N/A P0ABE7
    P29274
    39738009
    869859 8rw4:A (2.2) BS04 CLR N/A N/A P0ABE7
    P29274
    39738009
    869860 8rw7:A (2.25) BS01 A1H3J N/A N/A P0ABE7
    P29274
    39738009
    869861 8rw7:A (2.25) BS02 CLR N/A N/A P0ABE7
    P29274
    39738009
    869862 8rw7:A (2.25) BS03 CLR N/A N/A P0ABE7
    P29274
    39738009
    869863 8rw8:B (2.16) BS01 A1H3P N/A N/A O00327 N/A
    869864 8rw8:B (2.16) BS02 A1H3Q N/A N/A O00327 N/A
    869865 8rwc:A (2.31) BS01 A1H3I N/A N/A P0ABE7
    P29274
    39738009
    869866 8rwc:A (2.31) BS02 CLR N/A N/A P0ABE7
    P29274
    39738009
    869867 8rwc:A (2.31) BS03 CLR N/A N/A P0ABE7
    P29274
    39738009
    869868 8rwc:A (2.31) BS04 CLR N/A N/A P0ABE7
    P29274
    39738009
    869869 8rwc:A (2.31) BS05 CLR N/A N/A P0ABE7
    P29274
    39738009
    869870 8rwd:A (2.05) BS01 A1H3H N/A N/A P0ABE7
    P29274
    39738009
    869871 8rwd:A (2.05) BS02 CLR N/A N/A P0ABE7
    P29274
    39738009
    869872 8rwd:A (2.05) BS03 CLR N/A N/A P0ABE7
    P29274
    39738009
    869873 8rwd:A (2.05) BS04 CLR N/A N/A P0ABE7
    P29274
    39738009
    869874 8rwe:A (2.2) BS01 A1H3K N/A N/A P0ABE7
    P29274
    39738009
    869875 8rwe:A (2.2) BS02 CLR N/A N/A P0ABE7
    P29274
    39738009
    869876 8rwe:A (2.2) BS03 CLR N/A N/A P0ABE7
    P29274
    39738009
    869877 8rwg:1 (2.46) BS01 rna N/A N/A Q9HVL7 N/A
    869878 8rwg:1 (2.46) BS02 rna N/A N/A Q9HVL7 N/A
    869879 8rwg:2 (2.46) BS01 rna N/A N/A Q9HTN8 N/A
    869880 8rwg:3 (2.46) BS01 rna N/A N/A Q9HWE3 N/A
    869881 8rwg:4 (2.46) BS01 rna N/A N/A Q9HWF3 N/A
    869882 8rwg:4 (2.46) BS02 rna N/A N/A Q9HWF3 N/A
    869883 8rwg:5 (2.46) BS01 rna N/A N/A Q9HZN4 N/A
    869884 8rwg:6 (2.46) BS01 rna N/A N/A Q9HTN9 N/A
    869885 8rwg:7 (2.46) BS01 rna N/A N/A P29436 N/A
    869886 8rwg:8 (2.46) BS01 rna N/A N/A Q9I0A1 N/A
    869887 8rwg:9 (2.46) BS01 rna N/A N/A Q9HWF6 N/A
    869888 8rwg:9 (2.46) BS02 ZN N/A N/A Q9HWF6 N/A
    869889 8rwg:D (2.46) BS01 rna N/A N/A Q9HWD8 N/A
    869890 8rwg:D (2.46) BS02 MG N/A N/A Q9HWD8 N/A
    869891 8rwg:E (2.46) BS01 rna N/A N/A Q9HWD5 N/A
    869892 8rwg:F (2.46) BS01 rna N/A N/A Q9HWD6 N/A
    869893 8rwg:G (2.46) BS01 rna N/A N/A Q9HWE7 N/A
    869894 8rwg:G (2.46) BS02 rna N/A N/A Q9HWE7 N/A
    869895 8rwg:H (2.46) BS01 rna N/A N/A Q9HWF0 N/A
    869896 8rwg:I (2.46) BS01 rna N/A N/A Q9HUN2 N/A
    869897 8rwg:J (2.46) BS01 rna N/A N/A Q9HVY2 N/A
    869898 8rwg:K (2.46) BS01 rna N/A N/A Q9HWE5 N/A
    869899 8rwg:K (2.46) BS02 rna N/A N/A Q9HWE5 N/A
    869900 8rwg:L (2.46) BS01 rna N/A N/A Q9HWF4 N/A
    869901 8rwg:M (2.46) BS01 rna N/A N/A Q9HWE2 N/A
    869902 8rwg:M (2.46) BS02 rna N/A N/A Q9HWE2 N/A
    869903 8rwg:N (2.46) BS01 rna N/A N/A O52761 N/A
    869904 8rwg:O (2.46) BS01 rna N/A N/A Q9HWF1 N/A
    869905 8rwg:O (2.46) BS02 rna N/A N/A Q9HWF1 N/A
    869906 8rwg:P (2.46) BS01 rna N/A N/A Q9HXQ2 N/A
    869907 8rwg:P (2.46) BS02 rna N/A N/A Q9HXQ2 N/A
    869908 8rwg:Q (2.46) BS01 rna N/A N/A Q9I0A2 N/A
    869909 8rwg:R (2.46) BS01 rna N/A N/A Q9HVL6 N/A
    869910 8rwg:S (2.46) BS01 rna N/A N/A Q9HWE0 N/A
    869911 8rwg:T (2.46) BS01 rna N/A N/A Q9HWD7 N/A
    869912 8rwg:U (2.46) BS01 rna N/A N/A Q9HWE6 N/A
    869913 8rwg:V (2.46) BS01 rna N/A N/A Q9HVC4 N/A
    869914 8rwg:V (2.46) BS02 rna N/A N/A Q9HVC4 N/A
    869915 8rwg:a (2.46) BS01 rna N/A N/A O82850 N/A
    869916 8rwg:b (2.46) BS01 rna N/A N/A Q9HWE1 N/A
    869917 8rwg:c (2.46) BS01 rna N/A N/A O52759 N/A
    869918 8rwg:d (2.46) BS01 rna N/A N/A Q9HWF2 N/A
    869919 8rwg:e (2.46) BS01 rna N/A N/A Q9HUM9 N/A
    869920 8rwg:f (2.46) BS01 rna N/A N/A Q9HWD1 N/A
    869921 8rwg:g (2.46) BS01 rna N/A N/A Q9HWE9 N/A
    869922 8rwg:h (2.46) BS01 rna N/A N/A Q9HVY3 N/A
    869923 8rwg:i (2.46) BS01 rna N/A N/A Q9HWD4 N/A
    869924 8rwg:j (2.46) BS01 rna N/A N/A Q9HWF8 N/A
    869925 8rwg:k (2.46) BS01 rna N/A N/A Q9HWD0 N/A
    869926 8rwg:l (2.46) BS01 rna N/A N/A Q9HWF7 N/A
    869927 8rwg:m (2.46) BS01 rna N/A N/A Q9HWE8 N/A
    869928 8rwg:n (2.46) BS01 rna N/A N/A Q9HV58 N/A
    869929 8rwg:n (2.46) BS02 rna N/A N/A Q9HV58 N/A
    869930 8rwg:o (2.46) BS01 rna N/A N/A Q9HXP9 N/A
    869931 8rwg:p (2.46) BS01 rna N/A N/A Q9HWE4 N/A
    869932 8rwg:q (2.46) BS01 rna N/A N/A Q9HUN0 N/A
    869933 8rwg:r (2.46) BS01 rna N/A N/A Q9HWD9 N/A
    869934 8rwg:s (2.46) BS01 rna N/A N/A Q9HVM1 N/A
    869935 8rwg:t (2.46) BS01 rna N/A N/A Q9I5V8 N/A
    869936 8rwh:A (2.45) BS01 A1H3I N/A N/A P0ABE7
    P29274
    39738009
    869937 8rwh:A (2.45) BS02 CLR N/A N/A P0ABE7
    P29274
    39738009
    869938 8rwh:A (2.45) BS03 CLR N/A N/A P0ABE7
    P29274
    39738009
    869939 8rwh:A (2.45) BS04 CLR N/A N/A P0ABE7
    P29274
    39738009
    869940 8rwi:A (2.8) BS01 A1H3I N/A N/A P0ABE7
    P29274
    39738009
    869941 8rwi:A (2.8) BS02 CLR N/A N/A P0ABE7
    P29274
    39738009
    869942 8rwi:A (2.8) BS03 CLR N/A N/A P0ABE7
    P29274
    39738009
    869943 8rwi:A (2.8) BS04 CLR N/A N/A P0ABE7
    P29274
    39738009
    869944 8rwj:A (3.5) BS01 6R9 N/A GO:0003987 ... N1P7N2 38906101
    869945 8rwj:B (3.5) BS01 6R9 N/A GO:0003987 ... N1P7N2 38906101
    869946 8rwj:C (3.5) BS01 6R9 N/A GO:0003987 ... N1P7N2 38906101
    869947 8rwj:D (3.5) BS01 6R9 N/A GO:0003987 ... N1P7N2 38906101
    869948 8rwj:E (3.5) BS01 6R9 N/A GO:0003987 ... N1P7N2 38906101
    869949 8rwj:F (3.5) BS01 6R9 N/A GO:0003987 ... N1P7N2 38906101
    869950 8rwj:G (3.5) BS01 6R9 N/A GO:0003987 ... N1P7N2 38906101
    869951 8rwj:H (3.5) BS01 6R9 N/A GO:0003987 ... N1P7N2 38906101
    869952 8rwj:I (3.5) BS01 6R9 N/A GO:0003987 ... N1P7N2 38906101
    869953 8rwk:A (3.8) BS01 NAP N/A GO:0004029 ... P46367 38906101
    869954 8rwk:B (3.8) BS01 NAP N/A GO:0004029 ... P46367 38906101
    869955 8rwk:C (3.8) BS01 NAP N/A GO:0004029 ... P46367 38906101
    869956 8rwk:D (3.8) BS01 NAP N/A GO:0004029 ... P46367 38906101
    869957 8rwl:A (2.3) BS01 NDP N/A GO:0003824 ... Q8TWG5 39834309
    869958 8rwl:B (2.3) BS01 NDP N/A GO:0003824 ... Q8TWG5 39834309
    869959 8rwm:A (1.644) BS01 MG N/A GO:0008168 ... D5FKJ3 38887142
    869960 8rwm:A (1.644) BS02 MG N/A GO:0008168 ... D5FKJ3 38887142
    869961 8rwm:B (1.644) BS01 MG N/A GO:0008168 ... D5FKJ3 38887142
    869962 8rwp:A (1.19) BS01 NXL N/A N/A Q9F663 39364073
    869963 8rwp:A (1.19) BS02 A1H3M N/A N/A Q9F663 39364073
    869964 8rwr:A (1.03) BS01 A1H3N N/A N/A Q9F663 39364073
    869965 8rwr:A (1.03) BS02 A1H3O N/A N/A Q9F663 39364073
    869966 8rws:A (1.09) BS01 O2F N/A N/A Q9F663 39364073
    869967 8rws:A (1.09) BS02 MER N/A N/A Q9F663 39364073
    869968 8rwv:4 (6.68) BS01 dna N/A N/A P33991 39779677
    869969 8rwv:6 (6.68) BS01 dna N/A N/A Q14566 39779677
    869970 8rwv:B (6.68) BS01 dna N/A N/A Q13416 39779677
    869971 8rwv:E (6.68) BS01 dna N/A N/A O43913 39779677
    869972 8rww:A (1.95) BS01 ZN N/A GO:0008168 ... R9UTR3 38887142
    869973 8rww:A (1.95) BS02 COI N/A GO:0008168 ... R9UTR3 38887142
    869974 8rwx:A (3.05) BS01 A1H3H N/A N/A P0ABE7
    P29274
    39738009
    869975 8rwy:A (3.02) BS01 HEM N/A GO:0004601 ... A0A7U8UU09 38864770
    869976 8rwy:B (3.02) BS01 HEM N/A GO:0004601 ... A0A7U8UU09 38864770
    869977 8rwy:C (3.02) BS01 HEM N/A GO:0004601 ... A0A7U8UU09 38864770
    869978 8rwy:D (3.02) BS01 HEM N/A GO:0004601 ... A0A7U8UU09 38864770
    869979 8rwy:E (3.02) BS01 HEM N/A GO:0004601 ... A0A7U8UU09 38864770
    869980 8rwy:F (3.02) BS01 HEM N/A GO:0004601 ... A0A7U8UU09 38864770
    869981 8rwz:A (4.0) BS01 759 ? N/A O60885 39392888
    869982 8rwz:B (4.0) BS01 759 ? N/A P40337 39392888
    869983 8rwz:R (4.0) BS01 ZN 2.3.2.27
    2.3.2.32
    GO:0008270 ... P62877 39392888
    869984 8rwz:R (4.0) BS02 ZN 2.3.2.27
    2.3.2.32
    GO:0008270 ... P62877 39392888
    869985 8rwz:R (4.0) BS03 ZN 2.3.2.27
    2.3.2.32
    GO:0008270 ... P62877 39392888
    869986 8rx0:A (3.7) BS01 759 ? N/A O60885 39392888
    869987 8rx0:B (3.7) BS01 759 ? N/A P40337 39392888
    869988 8rx0:R (3.7) BS01 ZN 2.3.2.27
    2.3.2.32
    GO:0008270 ... P62877 39392888
    869989 8rx0:R (3.7) BS02 ZN 2.3.2.27
    2.3.2.32
    GO:0008270 ... P62877 39392888
    869990 8rx0:R (3.7) BS03 ZN 2.3.2.27
    2.3.2.32
    GO:0008270 ... P62877 39392888
    869991 8rx3:A (1.85) BS01 ZN 3.3.2.6
    3.4.11.4
    GO:0003723 ... P09960 38476002
    869992 8rx3:A (1.85) BS02 A1H3T 3.3.2.6
    3.4.11.4
    GO:0003723 ... P09960 38476002
    869993 8rx7:A (1.85) BS01 ZN 3.3.2.6
    3.4.11.4
    GO:0003723 ... P09960 38476002
    869994 8rx7:A (1.85) BS02 A1H3S 3.3.2.6
    3.4.11.4
    GO:0003723 ... P09960 38476002
    869995 8rx8:A (2.85) BS01 CA N/A GO:0000325 ... Q9M8U1 39536104
    869996 8rx8:A (2.85) BS02 CA N/A GO:0000325 ... Q9M8U1 39536104
    869997 8rx8:A (2.85) BS03 CA N/A GO:0000325 ... Q9M8U1 39536104
    869998 8rx8:A (2.85) BS04 CA N/A GO:0000325 ... Q9M8U1 39536104
    869999 8rx9:A (2.9) BS01 ZN 3.3.2.6
    3.4.11.4
    GO:0003723 ... P09960 38476002
    870000 8rx9:A (2.9) BS02 A1H3U 3.3.2.6
    3.4.11.4
    GO:0003723 ... P09960 38476002

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).