SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    870201 8rxh:ST (2.93) BS01 rna ? GO:0003735 ... Q4Q3M1 38722744
    870202 8rxh:ST (2.93) BS02 rna ? GO:0003735 ... Q4Q3M1 38722744
    870203 8rxh:SU (2.93) BS01 rna N/A GO:0003735 ... N/A 38722744
    870204 8rxh:SV (2.93) BS01 rna ? GO:0003735 ... Q4Q806 38722744
    870205 8rxh:SW (2.93) BS01 rna ? GO:0000028 ... Q4QBV0 38722744
    870206 8rxh:SX (2.93) BS01 rna ? GO:0000028 ... E9AEE8 38722744
    870207 8rxh:SX (2.93) BS02 MG ? GO:0000028 ... E9AEE8 38722744
    870208 8rxh:SY (2.93) BS01 rna ? GO:0000447 ... Q4QH01 38722744
    870209 8rxh:SZ (2.93) BS01 rna ? GO:0003735 ... Q4Q1D2 38722744
    870210 8rxh:Sa (2.93) BS01 rna ? GO:0003735 ... Q4Q9X4 38722744
    870211 8rxh:Sa (2.93) BS02 rna ? GO:0003735 ... Q4Q9X4 38722744
    870212 8rxh:Sa (2.93) BS03 rna ? GO:0003735 ... Q4Q9X4 38722744
    870213 8rxh:Sb (2.93) BS01 rna ? GO:0003729 ... Q4Q8L6 38722744
    870214 8rxh:Sc (2.93) BS01 rna ? GO:0000028 ... Q4Q140 38722744
    870215 8rxh:Sd (2.93) BS01 rna ? GO:0000028 ... Q4Q931 38722744
    870216 8rxh:Se (2.93) BS01 rna ? GO:0003735 ... Q4Q7P0 38722744
    870217 8rxh:Sf (2.93) BS01 rna ? GO:0003735 ... Q4QFK7 38722744
    870218 8rxh:Sg (2.93) BS01 rna ? GO:0005080 ... Q4Q7Y7 38722744
    870219 8rxh:Sh (2.93) BS01 rna ? GO:0003676 ... Q4Q5K7 38722744
    870220 8rxi:A (1.477) BS01 SF4 N/A N/A P07598 N/A
    870221 8rxi:A (1.477) BS02 SF4 N/A N/A P07598 N/A
    870222 8rxi:A (1.477) BS03 SF4 N/A N/A P07598 N/A
    870223 8rxi:A (1.477) BS04 LFH N/A N/A P07598 N/A
    870224 8rxj:A (1.507) BS01 402 N/A N/A P07598 N/A
    870225 8rxj:A (1.507) BS02 SF4 N/A N/A P07598 N/A
    870226 8rxj:A (1.507) BS03 SF4 N/A N/A P07598 N/A
    870227 8rxj:A (1.507) BS04 SF4 N/A N/A P07598 N/A
    870228 8rxk:C (3.23) BS01 dna N/A GO:0006508 ... A0A3A6V972 39424952
    870229 8rxk:C (3.23) BS02 ANP N/A GO:0006508 ... A0A3A6V972 39424952
    870230 8rxk:C (3.23) BS03 ANP N/A GO:0006508 ... A0A3A6V972 39424952
    870231 8rxk:D (3.23) BS01 dna N/A GO:0006508 ... A0A3A6V972 39424952
    870232 8rxk:D (3.23) BS02 ANP N/A GO:0006508 ... A0A3A6V972 39424952
    870233 8rxk:E (3.23) BS01 ANP N/A GO:0006508 ... A0A3A6V972 39424952
    870234 8rxl:A (2.29) BS01 A1H3Z N/A N/A Q15562 N/A
    870235 8rxl:B (2.29) BS01 A1H3Z N/A N/A Q15562 N/A
    870236 8rxn:A (1.0) BS01 FE ? GO:0005506 ... P00269 1616692
    870237 8rxp:A (2.49) BS01 A1H3Y N/A N/A Q15562 N/A
    870238 8rxp:B (2.49) BS01 A1H3Y N/A N/A Q15562 N/A
    870239 8rxq:B (2.63) BS01 A1H3X N/A N/A Q15562 N/A
    870240 8rxr:A (2.06) BS01 A1H4E 2.7.1.137 GO:0016301 ... Q8NEB9 38506049
    870241 8rxr:B (2.06) BS01 A1H4E 2.7.1.137 GO:0016301 ... Q8NEB9 38506049
    870242 8rxt:A (3.93) BS01 ANP N/A GO:0006508 ... A0A3A6V972 39424952
    870243 8rxt:B (3.93) BS01 ANP N/A GO:0006508 ... A0A3A6V972 39424952
    870244 8rxt:B (3.93) BS02 ANP N/A GO:0006508 ... A0A3A6V972 39424952
    870245 8rxt:D (3.93) BS01 ANP N/A GO:0006508 ... A0A3A6V972 39424952
    870246 8rxt:E (3.93) BS01 ANP N/A GO:0006508 ... A0A3A6V972 39424952
    870247 8rxt:E (3.93) BS02 ANP N/A GO:0006508 ... A0A3A6V972 39424952
    870248 8rxt:F (3.93) BS01 ANP N/A GO:0006508 ... A0A3A6V972 39424952
    870249 8rxu:AAA (1.737) BS01 HEC N/A GO:0042279 ... N/A N/A
    870250 8rxu:AAA (1.737) BS02 HEC N/A GO:0042279 ... N/A N/A
    870251 8rxu:AAA (1.737) BS03 HEC N/A GO:0042279 ... N/A N/A
    870252 8rxu:AAA (1.737) BS04 HEC N/A GO:0042279 ... N/A N/A
    870253 8rxu:AAA (1.737) BS05 HEC N/A GO:0042279 ... N/A N/A
    870254 8rxu:AAA (1.737) BS06 HEC N/A GO:0042279 ... N/A N/A
    870255 8rxu:AAA (1.737) BS07 HEC N/A GO:0042279 ... N/A N/A
    870256 8rxu:AAA (1.737) BS08 HEC N/A GO:0042279 ... N/A N/A
    870257 8rxu:AAA (1.737) BS09 CA N/A GO:0042279 ... N/A N/A
    870258 8rxu:MMM (1.737) BS01 HEC N/A GO:0042279 ... N/A N/A
    870259 8rxu:MMM (1.737) BS02 HEC N/A GO:0042279 ... N/A N/A
    870260 8rxu:MMM (1.737) BS03 HEC N/A GO:0042279 ... N/A N/A
    870261 8rxu:MMM (1.737) BS04 HEC N/A GO:0042279 ... N/A N/A
    870262 8rxu:MMM (1.737) BS05 HEC N/A GO:0042279 ... N/A N/A
    870263 8rxu:MMM (1.737) BS06 HEC N/A GO:0042279 ... N/A N/A
    870264 8rxu:MMM (1.737) BS07 HEC N/A GO:0042279 ... N/A N/A
    870265 8rxu:MMM (1.737) BS08 HEC N/A GO:0042279 ... N/A N/A
    870266 8rxu:MMM (1.737) BS09 CA N/A GO:0042279 ... N/A N/A
    870267 8rxu:YYY (1.737) BS01 HEC N/A GO:0042279 ... N/A N/A
    870268 8rxu:YYY (1.737) BS02 HEC N/A GO:0042279 ... N/A N/A
    870269 8rxu:YYY (1.737) BS03 HEC N/A GO:0042279 ... N/A N/A
    870270 8rxu:YYY (1.737) BS04 HEC N/A GO:0042279 ... N/A N/A
    870271 8rxu:YYY (1.737) BS05 HEC N/A GO:0042279 ... N/A N/A
    870272 8rxu:YYY (1.737) BS06 HEC N/A GO:0042279 ... N/A N/A
    870273 8rxu:YYY (1.737) BS07 HEC N/A GO:0042279 ... N/A N/A
    870274 8rxu:YYY (1.737) BS08 HEC N/A GO:0042279 ... N/A N/A
    870275 8rxu:YYY (1.737) BS09 CA N/A GO:0042279 ... N/A N/A
    870276 8rxv:A (2.05) BS01 A1H3W N/A N/A Q15562 N/A
    870277 8rxv:B (2.05) BS01 A1H3W N/A N/A Q15562 N/A
    870278 8rxx:LA (2.97) BS01 rna ? GO:0002181 ... Q4FWX5 38722744
    870279 8rxx:LA (2.97) BS02 rna ? GO:0002181 ... Q4FWX5 38722744
    870280 8rxx:LA (2.97) BS03 rna ? GO:0002181 ... Q4FWX5 38722744
    870281 8rxx:LA (2.97) BS04 rna ? GO:0002181 ... Q4FWX5 38722744
    870282 8rxx:LB (2.97) BS01 rna ? GO:0003723 ... Q4Q2Q6 38722744
    870283 8rxx:LB (2.97) BS02 rna ? GO:0003723 ... Q4Q2Q6 38722744
    870284 8rxx:LB (2.97) BS03 rna ? GO:0003723 ... Q4Q2Q6 38722744
    870285 8rxx:LB (2.97) BS04 rna ? GO:0003723 ... Q4Q2Q6 38722744
    870286 8rxx:LC (2.97) BS01 rna ? GO:0003723 ... E9ADW5 38722744
    870287 8rxx:LC (2.97) BS02 rna ? GO:0003723 ... E9ADW5 38722744
    870288 8rxx:LC (2.97) BS03 rna ? GO:0003723 ... E9ADW5 38722744
    870289 8rxx:LD (2.97) BS01 rna ? GO:0003723 ... P48157 38722744
    870290 8rxx:LD (2.97) BS02 rna ? GO:0003723 ... P48157 38722744
    870291 8rxx:LD (2.97) BS03 rna ? GO:0003723 ... P48157 38722744
    870292 8rxx:LE (2.97) BS01 rna ? GO:0002181 ... Q4QC91 38722744
    870293 8rxx:LE (2.97) BS02 rna ? GO:0002181 ... Q4QC91 38722744
    870294 8rxx:LE (2.97) BS03 rna ? GO:0002181 ... Q4QC91 38722744
    870295 8rxx:LE (2.97) BS04 rna ? GO:0002181 ... Q4QC91 38722744
    870296 8rxx:LF (2.97) BS01 rna ? GO:0002181 ... Q4Q4D3 38722744
    870297 8rxx:LF (2.97) BS02 rna ? GO:0002181 ... Q4Q4D3 38722744
    870298 8rxx:LG (2.97) BS01 rna ? GO:0000470 ... Q4QIP1 38722744
    870299 8rxx:LG (2.97) BS02 rna ? GO:0000470 ... Q4QIP1 38722744
    870300 8rxx:LG (2.97) BS03 rna ? GO:0000470 ... Q4QIP1 38722744
    870301 8rxx:LH (2.97) BS01 rna ? GO:0003729 ... Q4QFG2 38722744
    870302 8rxx:LH (2.97) BS02 rna ? GO:0003729 ... Q4QFG2 38722744
    870303 8rxx:LH (2.97) BS03 rna ? GO:0003729 ... Q4QFG2 38722744
    870304 8rxx:LH (2.97) BS04 rna ? GO:0003729 ... Q4QFG2 38722744
    870305 8rxx:LI (2.97) BS01 rna ? GO:0003723 ... E9AEA8 38722744
    870306 8rxx:LI (2.97) BS02 rna ? GO:0003723 ... E9AEA8 38722744
    870307 8rxx:LI (2.97) BS03 rna ? GO:0003723 ... E9AEA8 38722744
    870308 8rxx:LJ (2.97) BS01 rna ? GO:0003735 ... E9AFK3 38722744
    870309 8rxx:LJ (2.97) BS02 rna ? GO:0003735 ... E9AFK3 38722744
    870310 8rxx:LK (2.97) BS01 rna ? GO:0003723 ... Q4QBJ1 38722744
    870311 8rxx:LK (2.97) BS02 rna ? GO:0003723 ... Q4QBJ1 38722744
    870312 8rxx:LK (2.97) BS03 rna ? GO:0003723 ... Q4QBJ1 38722744
    870313 8rxx:LL (2.97) BS01 rna ? GO:0003735 ... E9AFK0 38722744
    870314 8rxx:LL (2.97) BS02 rna ? GO:0003735 ... E9AFK0 38722744
    870315 8rxx:LM (2.97) BS01 rna ? GO:0002181 ... Q4Q6S3 38722744
    870316 8rxx:LM (2.97) BS02 rna ? GO:0002181 ... Q4Q6S3 38722744
    870317 8rxx:LM (2.97) BS03 rna ? GO:0002181 ... Q4Q6S3 38722744
    870318 8rxx:LN (2.97) BS01 rna ? GO:0003735 ... O97213 38722744
    870319 8rxx:LN (2.97) BS02 rna ? GO:0003735 ... O97213 38722744
    870320 8rxx:LN (2.97) BS03 rna ? GO:0003735 ... O97213 38722744
    870321 8rxx:LO (2.97) BS01 rna ? GO:0000027 ... E9AF09 38722744
    870322 8rxx:LO (2.97) BS02 rna ? GO:0000027 ... E9AF09 38722744
    870323 8rxx:LO (2.97) BS03 rna ? GO:0000027 ... E9AF09 38722744
    870324 8rxx:LP (2.97) BS01 rna ? GO:0003723 ... Q4QG98 38722744
    870325 8rxx:LP (2.97) BS02 rna ? GO:0003723 ... Q4QG98 38722744
    870326 8rxx:LQ (2.97) BS01 rna ? GO:0003723 ... Q4QJ37 38722744
    870327 8rxx:LQ (2.97) BS02 rna ? GO:0003723 ... Q4QJ37 38722744
    870328 8rxx:LQ (2.97) BS03 rna ? GO:0003723 ... Q4QJ37 38722744
    870329 8rxx:LQ (2.97) BS04 rna ? GO:0003723 ... Q4QJ37 38722744
    870330 8rxx:LQ (2.97) BS05 rna ? GO:0003723 ... Q4QJ37 38722744
    870331 8rxx:LR (2.97) BS01 rna ? GO:0002181 ... Q4Q5J4 38722744
    870332 8rxx:LR (2.97) BS02 rna ? GO:0002181 ... Q4Q5J4 38722744
    870333 8rxx:LR (2.97) BS03 rna ? GO:0002181 ... Q4Q5J4 38722744
    870334 8rxx:LS (2.97) BS01 rna ? GO:0003735 ... Q4QEX4 38722744
    870335 8rxx:LS (2.97) BS02 rna ? GO:0003735 ... Q4QEX4 38722744
    870336 8rxx:LS (2.97) BS03 rna ? GO:0003735 ... Q4QEX4 38722744
    870337 8rxx:LT (2.97) BS01 rna ? GO:0002181 ... Q4QAX6 38722744
    870338 8rxx:LT (2.97) BS02 rna ? GO:0002181 ... Q4QAX6 38722744
    870339 8rxx:LT (2.97) BS03 rna ? GO:0002181 ... Q4QAX6 38722744
    870340 8rxx:LT (2.97) BS04 rna ? GO:0002181 ... Q4QAX6 38722744
    870341 8rxx:LT (2.97) BS05 rna ? GO:0002181 ... Q4QAX6 38722744
    870342 8rxx:LU (2.97) BS01 rna ? GO:0002181 ... Q4Q0X2 38722744
    870343 8rxx:LU (2.97) BS02 rna ? GO:0002181 ... Q4Q0X2 38722744
    870344 8rxx:LU (2.97) BS03 rna ? GO:0002181 ... Q4Q0X2 38722744
    870345 8rxx:LV (2.97) BS01 rna ? GO:0003735 ... Q4QJ20 38722744
    870346 8rxx:LV (2.97) BS02 rna ? GO:0003735 ... Q4QJ20 38722744
    870347 8rxx:LV (2.97) BS03 rna ? GO:0003735 ... Q4QJ20 38722744
    870348 8rxx:LW (2.97) BS01 rna ? GO:0002181 ... Q4QAC5 38722744
    870349 8rxx:LW (2.97) BS02 rna ? GO:0002181 ... Q4QAC5 38722744
    870350 8rxx:LX (2.97) BS01 rna ? GO:0002181 ... Q4Q1W6 38722744
    870351 8rxx:LX (2.97) BS02 rna ? GO:0002181 ... Q4Q1W6 38722744
    870352 8rxx:LY (2.97) BS01 rna ? GO:0003735 ... Q4Q504 38722744
    870353 8rxx:LY (2.97) BS02 rna ? GO:0003735 ... Q4Q504 38722744
    870354 8rxx:LZ (2.97) BS01 rna ? GO:0003735 ... Q4QGW7 38722744
    870355 8rxx:La (2.97) BS01 rna ? GO:0000463 ... Q4Q8V7 38722744
    870356 8rxx:La (2.97) BS02 rna ? GO:0000463 ... Q4Q8V7 38722744
    870357 8rxx:Lb (2.97) BS01 rna ? GO:0002181 ... Q4Q178 38722744
    870358 8rxx:Lb (2.97) BS02 rna ? GO:0002181 ... Q4Q178 38722744
    870359 8rxx:Lc (2.97) BS01 rna ? GO:0000463 ... Q4Q9H4 38722744
    870360 8rxx:Lc (2.97) BS02 rna ? GO:0000463 ... Q4Q9H4 38722744
    870361 8rxx:Ld (2.97) BS01 rna ? GO:0003723 ... E9AEK1 38722744
    870362 8rxx:Le (2.97) BS01 rna ? GO:0002181 ... E9AFF2 38722744
    870363 8rxx:Le (2.97) BS02 rna ? GO:0002181 ... E9AFF2 38722744
    870364 8rxx:Le (2.97) BS03 rna ? GO:0002181 ... E9AFF2 38722744
    870365 8rxx:Le (2.97) BS04 rna ? GO:0002181 ... E9AFF2 38722744
    870366 8rxx:Lf (2.97) BS01 rna ? GO:0003735 ... Q4QC11 38722744
    870367 8rxx:Lg (2.97) BS01 rna ? GO:0002181 ... Q4QHL3 38722744
    870368 8rxx:Lg (2.97) BS02 rna ? GO:0002181 ... Q4QHL3 38722744
    870369 8rxx:Lg (2.97) BS03 rna ? GO:0002181 ... Q4QHL3 38722744
    870370 8rxx:Lh (2.97) BS01 rna ? GO:0003735 ... Q4QDP9 38722744
    870371 8rxx:Lh (2.97) BS02 rna ? GO:0003735 ... Q4QDP9 38722744
    870372 8rxx:Lh (2.97) BS03 rna ? GO:0003735 ... Q4QDP9 38722744
    870373 8rxx:Li (2.97) BS01 rna ? GO:0002181 ... Q4QCE1 38722744
    870374 8rxx:Li (2.97) BS02 rna ? GO:0002181 ... Q4QCE1 38722744
    870375 8rxx:Lj (2.97) BS01 rna ? GO:0003723 ... E9AEH2 38722744
    870376 8rxx:Lj (2.97) BS02 rna ? GO:0003723 ... E9AEH2 38722744
    870377 8rxx:Lj (2.97) BS03 rna ? GO:0003723 ... E9AEH2 38722744
    870378 8rxx:Lk (2.97) BS01 rna ? GO:0003735 ... Q4Q8X0 38722744
    870379 8rxx:Lk (2.97) BS02 rna ? GO:0003735 ... Q4Q8X0 38722744
    870380 8rxx:Lk (2.97) BS03 rna ? GO:0003735 ... Q4Q8X0 38722744
    870381 8rxx:Ll (2.97) BS01 rna ? GO:0003735 ... Q4QEQ0 38722744
    870382 8rxx:Ll (2.97) BS02 rna ? GO:0003735 ... Q4QEQ0 38722744
    870383 8rxx:Ll (2.97) BS03 rna ? GO:0003735 ... Q4QEQ0 38722744
    870384 8rxx:Lm (2.97) BS01 rna ? GO:0003735 ... P69201 38722744
    870385 8rxx:Lm (2.97) BS02 rna ? GO:0003735 ... P69201 38722744
    870386 8rxx:Lm (2.97) BS03 rna ? GO:0003735 ... P69201 38722744
    870387 8rxx:Lm (2.97) BS04 ZN ? GO:0003735 ... P69201 38722744
    870388 8rxx:Ln (2.97) BS01 rna N/A GO:0003735 ... N/A 38722744
    870389 8rxx:Ln (2.97) BS02 rna N/A GO:0003735 ... N/A 38722744
    870390 8rxx:Lo (2.97) BS01 rna ? GO:0003735 ... Q4QC01 38722744
    870391 8rxx:Lo (2.97) BS02 rna ? GO:0003735 ... Q4QC01 38722744
    870392 8rxx:Lo (2.97) BS03 rna ? GO:0003735 ... Q4QC01 38722744
    870393 8rxx:Lp (2.97) BS01 rna ? GO:0003735 ... Q4Q3L3 38722744
    870394 8rxx:Lp (2.97) BS02 rna ? GO:0003735 ... Q4Q3L3 38722744
    870395 8rxx:Lp (2.97) BS03 rna ? GO:0003735 ... Q4Q3L3 38722744
    870396 8rxx:SA (2.97) BS01 rna ? GO:0003735 ... Q4FX73 38722744
    870397 8rxx:SB (2.97) BS01 rna ? GO:0000028 ... Q4Q0Q0 38722744
    870398 8rxx:SC (2.97) BS01 rna ? GO:0003723 ... Q4Q4A0 38722744
    870399 8rxx:SD (2.97) BS01 rna ? GO:0003723 ... Q4QIM3 38722744
    870400 8rxx:SE (2.97) BS01 rna ? GO:0003723 ... Q4QG31 38722744

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).