SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    870401 8rxx:SF (2.97) BS01 rna ? GO:0003723 ... Q4QDL5 38722744
    870402 8rxx:SG (2.97) BS01 rna ? GO:0003735 ... Q9NE83 38722744
    870403 8rxx:SH (2.97) BS01 rna ? GO:0000028 ... Q868B1 38722744
    870404 8rxx:SI (2.97) BS01 rna ? GO:0003735 ... E9AC32 38722744
    870405 8rxx:SJ (2.97) BS01 rna ? GO:0003735 ... Q4QGW3 38722744
    870406 8rxx:SK (2.97) BS01 rna ? GO:0000462 ... P25204 38722744
    870407 8rxx:SK (2.97) BS02 rna ? GO:0000462 ... P25204 38722744
    870408 8rxx:SK (2.97) BS03 rna ? GO:0000462 ... P25204 38722744
    870409 8rxx:SK (2.97) BS04 MG ? GO:0000462 ... P25204 38722744
    870410 8rxx:SL (2.97) BS01 rna ? GO:0000462 ... Q4Q9A5 38722744
    870411 8rxx:SM (2.97) BS01 rna ? GO:0003735 ... Q4Q8G4 38722744
    870412 8rxx:SN (2.97) BS01 rna ? GO:0003723 ... Q4Q1X7 38722744
    870413 8rxx:SO (2.97) BS01 rna ? GO:0000028 ... Q4Q8H1 38722744
    870414 8rxx:SP (2.97) BS01 rna ? GO:0003735 ... Q4QC89 38722744
    870415 8rxx:SQ (2.97) BS01 rna ? GO:0003735 ... Q4QG97 38722744
    870416 8rxx:SR (2.97) BS01 rna ? GO:0003676 ... Q4Q1Y3 38722744
    870417 8rxx:SS (2.97) BS01 rna ? GO:0002181 ... Q4Q817 38722744
    870418 8rxx:SS (2.97) BS02 ZN ? GO:0002181 ... Q4Q817 38722744
    870419 8rxx:ST (2.97) BS01 rna ? GO:0003735 ... Q4Q3M1 38722744
    870420 8rxx:ST (2.97) BS02 rna ? GO:0003735 ... Q4Q3M1 38722744
    870421 8rxx:ST (2.97) BS03 rna ? GO:0003735 ... Q4Q3M1 38722744
    870422 8rxx:SU (2.97) BS01 rna N/A GO:0003735 ... N/A 38722744
    870423 8rxx:SV (2.97) BS01 rna ? GO:0003735 ... Q4Q806 38722744
    870424 8rxx:SW (2.97) BS01 rna ? GO:0000028 ... Q4QBV0 38722744
    870425 8rxx:SX (2.97) BS01 rna ? GO:0000028 ... E9AEE8 38722744
    870426 8rxx:SY (2.97) BS01 rna ? GO:0000447 ... Q4QH01 38722744
    870427 8rxx:SZ (2.97) BS01 rna ? GO:0003735 ... Q4Q1D2 38722744
    870428 8rxx:Sa (2.97) BS01 rna ? GO:0003735 ... Q4Q9X4 38722744
    870429 8rxx:Sb (2.97) BS01 rna ? GO:0003729 ... Q4Q8L6 38722744
    870430 8rxx:Sb (2.97) BS02 ZN ? GO:0003729 ... Q4Q8L6 38722744
    870431 8rxx:Sc (2.97) BS01 rna ? GO:0000028 ... Q4Q140 38722744
    870432 8rxx:Sd (2.97) BS01 rna ? GO:0000028 ... Q4Q931 38722744
    870433 8rxx:Se (2.97) BS01 rna ? GO:0003735 ... Q4Q7P0 38722744
    870434 8rxx:Sf (2.97) BS01 rna ? GO:0003735 ... Q4QFK7 38722744
    870435 8rxx:Sh (2.97) BS01 rna ? GO:0003676 ... Q4Q5K7 38722744
    870436 8ryc:A (2.09) BS01 A1H32 N/A N/A Q15562 N/A
    870437 8ryd:A (3.0) BS01 SAH N/A N/A N/A 39905070
    870438 8ryd:B (3.0) BS01 SAH N/A N/A N/A 39905070
    870439 8ryd:C (3.0) BS01 SAH N/A N/A N/A 39905070
    870440 8ryd:D (3.0) BS01 SAH N/A N/A N/A 39905070
    870441 8rye:A (1.95) BS01 MTA N/A N/A N/A 39905070
    870442 8rye:A (1.95) BS02 02A N/A N/A N/A 39905070
    870443 8rye:B (1.95) BS01 MTA N/A N/A N/A 39905070
    870444 8rye:B (1.95) BS02 02A N/A N/A N/A 39905070
    870445 8rye:C (1.95) BS01 MTA N/A N/A N/A 39905070
    870446 8rye:C (1.95) BS02 02A N/A N/A N/A 39905070
    870447 8rye:D (1.95) BS01 MTA N/A N/A N/A 39905070
    870448 8rye:D (1.95) BS02 02A N/A N/A N/A 39905070
    870449 8ryf:A (1.95) BS01 MTA N/A N/A N/A 39905070
    870450 8ryf:A (1.95) BS02 02A N/A N/A N/A 39905070
    870451 8ryf:B (1.95) BS01 MTA N/A N/A N/A 39905070
    870452 8ryg:A (2.1) BS01 SAH N/A N/A N/A 39905070
    870453 8ryg:B (2.1) BS01 SAH N/A N/A N/A 39905070
    870454 8ryh:A (1.773) BS01 SF4 N/A N/A P07598
    P07603
    N/A
    870455 8ryh:A (1.773) BS02 SF4 N/A N/A P07598
    P07603
    N/A
    870456 8ryh:A (1.773) BS03 SF4 N/A N/A P07598
    P07603
    N/A
    870457 8ryh:A (1.773) BS04 402 N/A N/A P07598
    P07603
    N/A
    870458 8ryi:B (2.06) BS01 C5J N/A GO:0046872 ... N/A 39271653
    870459 8ryi:B (2.06) BS02 URE N/A GO:0046872 ... N/A 39271653
    870460 8ryi:B (2.06) BS03 NI N/A GO:0046872 ... N/A 39271653
    870461 8ryi:B (2.06) BS04 NI N/A GO:0046872 ... N/A 39271653
    870462 8ryi:E (2.06) BS01 C5J N/A GO:0046872 ... N/A 39271653
    870463 8ryi:E (2.06) BS02 URE N/A GO:0046872 ... N/A 39271653
    870464 8ryi:E (2.06) BS03 NI N/A GO:0046872 ... N/A 39271653
    870465 8ryi:E (2.06) BS04 NI N/A GO:0046872 ... N/A 39271653
    870466 8ryi:E (2.06) BS05 CA N/A GO:0046872 ... N/A 39271653
    870467 8ryj:A (1.16) BS01 FRU N/A GO:0005507 ... Q89EJ6 39002715
    870468 8ryj:A (1.16) BS02 CU N/A GO:0005507 ... Q89EJ6 39002715
    870469 8ryj:A (1.16) BS03 CU N/A GO:0005507 ... Q89EJ6 39002715
    870470 8ryj:A (1.16) BS04 NO2 N/A GO:0005507 ... Q89EJ6 39002715
    870471 8ryk:A (1.8) BS01 peptide ? GO:0005125 ... P01584 38728572
    870472 8ryk:B (1.8) BS01 peptide ? GO:0005125 ... P01584 38728572
    870473 8ryk:B (1.8) BS02 peptide ? GO:0005125 ... P01584 38728572
    870474 8rym:A (2.34) BS01 peptide N/A N/A P04439 39500929
    870475 8rym:D (2.34) BS01 peptide N/A N/A N/A 39500929
    870476 8rym:E (2.34) BS01 peptide N/A N/A N/A 39500929
    870477 8ryn:A (1.97) BS01 peptide N/A N/A A0A583ZB34 39500929
    870478 8ryn:D (1.97) BS01 peptide N/A N/A N/A 39500929
    870479 8ryn:E (1.97) BS01 peptide N/A N/A N/A 39500929
    870480 8ryo:A (2.05) BS01 peptide N/A N/A P04439 39500929
    870481 8ryo:D (2.05) BS01 peptide N/A N/A N/A 39500929
    870482 8ryo:E (2.05) BS01 peptide N/A N/A N/A 39500929
    870483 8ryp:A (1.81) BS01 peptide N/A N/A P04439 39500929
    870484 8ryp:D (1.81) BS01 peptide N/A N/A N/A 39500929
    870485 8ryp:E (1.81) BS01 peptide N/A N/A N/A 39500929
    870486 8ryq:A (2.49) BS01 peptide N/A N/A A0A583ZB34 39500929
    870487 8ryq:D (2.49) BS01 peptide N/A N/A N/A 39500929
    870488 8ryq:E (2.49) BS01 peptide N/A N/A N/A 39500929
    870489 8ryq:F (2.49) BS01 peptide N/A N/A A0A583ZB34 39500929
    870490 8ryq:I (2.49) BS01 peptide N/A N/A N/A 39500929
    870491 8ryq:J (2.49) BS01 peptide N/A N/A N/A 39500929
    870492 8ryr:A (1.25) BS01 FRU N/A GO:0005507 ... Q89EJ6 39002715
    870493 8ryr:A (1.25) BS02 CU N/A GO:0005507 ... Q89EJ6 39002715
    870494 8ryr:A (1.25) BS03 CU N/A GO:0005507 ... Q89EJ6 39002715
    870495 8ryr:A (1.25) BS04 NO2 N/A GO:0005507 ... Q89EJ6 39002715
    870496 8ryu:A (1.45) BS01 FRU N/A GO:0005507 ... Q89EJ6 39002715
    870497 8ryu:A (1.45) BS02 CU N/A GO:0005507 ... Q89EJ6 39002715
    870498 8ryu:A (1.45) BS03 CU N/A GO:0005507 ... Q89EJ6 39002715
    870499 8ryu:A (1.45) BS04 NO N/A GO:0005507 ... Q89EJ6 39002715
    870500 8ryv:A (1.45) BS01 FRU N/A GO:0005507 ... Q89EJ6 39002715
    870501 8ryv:A (1.45) BS02 CU N/A GO:0005507 ... Q89EJ6 39002715
    870502 8ryv:A (1.45) BS03 CU N/A GO:0005507 ... Q89EJ6 39002715
    870503 8ryv:A (1.45) BS04 NO N/A GO:0005507 ... Q89EJ6 39002715
    870504 8ryz:A (2.02) BS01 AVJ N/A N/A C5CWE3 38994077
    870505 8rz3:A (2.15) BS01 UD1 N/A GO:0016740 ... C5CWE2 38994077
    870506 8rz3:B (2.15) BS01 UD1 N/A GO:0016740 ... C5CWE2 38994077
    870507 8rz3:C (2.15) BS01 UD1 N/A GO:0016740 ... C5CWE2 38994077
    870508 8rz7:A (3.37) BS01 dna N/A GO:0000287 ... P43246 N/A
    870509 8rz7:A (3.37) BS02 ADP N/A GO:0000287 ... P43246 N/A
    870510 8rz7:B (3.37) BS01 dna N/A GO:0003677 ... P20585 N/A
    870511 8rz7:B (3.37) BS02 dna N/A GO:0003677 ... P20585 N/A
    870512 8rz7:B (3.37) BS03 ADP N/A GO:0003677 ... P20585 N/A
    870513 8rz7:B (3.37) BS04 MG N/A GO:0003677 ... P20585 N/A
    870514 8rz8:A (3.06) BS01 MG N/A GO:0000287 ... P43246 N/A
    870515 8rz8:A (3.06) BS02 AGS N/A GO:0000287 ... P43246 N/A
    870516 8rz8:A (3.06) BS03 AGS N/A GO:0000287 ... P43246 N/A
    870517 8rz8:B (3.06) BS01 AGS N/A GO:0003677 ... P20585 N/A
    870518 8rz8:B (3.06) BS02 AGS N/A GO:0003677 ... P20585 N/A
    870519 8rz9:A (3.02) BS01 MG N/A GO:0000287 ... P43246 N/A
    870520 8rz9:A (3.02) BS02 AGS N/A GO:0000287 ... P43246 N/A
    870521 8rz9:A (3.02) BS03 AGS N/A GO:0000287 ... P43246 N/A
    870522 8rz9:B (3.02) BS01 AGS N/A GO:0003677 ... P20585 N/A
    870523 8rz9:B (3.02) BS02 AGS N/A GO:0003677 ... P20585 N/A
    870524 8rza:A (2.1) BS01 rna N/A GO:0003723 ... Q8U4Q7 39445822
    870525 8rza:A (2.1) BS02 rna N/A GO:0003723 ... Q8U4Q7 39445822
    870526 8rza:A (2.1) BS03 MG N/A GO:0003723 ... Q8U4Q7 39445822
    870527 8rza:A (2.1) BS04 MG N/A GO:0003723 ... Q8U4Q7 39445822
    870528 8rzb:A (1.836) BS01 A1H4A ? GO:0005125 ... P01584 38728572
    870529 8rzb:A (1.836) BS02 A1H4A ? GO:0005125 ... P01584 38728572
    870530 8rzb:B (1.836) BS01 A1H4A ? GO:0005125 ... P01584 38728572
    870531 8rzb:B (1.836) BS02 A1H4A ? GO:0005125 ... P01584 38728572
    870532 8rzb:C (1.836) BS01 A1H4A ? GO:0005125 ... P01584 38728572
    870533 8rzb:C (1.836) BS02 A1H4A ? GO:0005125 ... P01584 38728572
    870534 8rzb:D (1.836) BS01 A1H4A ? GO:0005125 ... P01584 38728572
    870535 8rzb:D (1.836) BS02 A1H4A ? GO:0005125 ... P01584 38728572
    870536 8rzc:A (2.35) BS01 A1H4D 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0004483 ... P0DTD1 39258386
    870537 8rzc:B (2.35) BS01 ZN 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69
    GO:0003723 ... P0DTD1 39258386
    870538 8rzc:B (2.35) BS02 ZN 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69
    GO:0003723 ... P0DTD1 39258386
    870539 8rzd:A (2.1) BS01 A1H4C 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0004483 ... P0DTD1 39258386
    870540 8rzd:B (2.1) BS01 ZN 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69
    GO:0003723 ... P0DTD1 39258386
    870541 8rzd:B (2.1) BS02 ZN 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69
    GO:0003723 ... P0DTD1 39258386
    870542 8rze:A (2.0) BS01 A1H4B 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0004483 ... P0DTD1 39258386
    870543 8rze:B (2.0) BS01 ZN 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69
    GO:0003723 ... P0DTD1 39258386
    870544 8rze:B (2.0) BS02 ZN 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69
    GO:0003723 ... P0DTD1 39258386
    870545 8rzf:A (2.04) BS01 MG N/A GO:0003723 ... Q4J9H1 39445822
    870546 8rzg:A (1.81) BS01 A1H39 N/A N/A G0L004 39022920
    870547 8rzg:B (1.81) BS01 A1H39 N/A N/A G0L004 39022920
    870548 8rzg:B (1.81) BS02 A1H39 N/A N/A G0L004 39022920
    870549 8rzg:C (1.81) BS01 A1H39 N/A N/A G0L004 39022920
    870550 8rzg:D (1.81) BS01 A1H39 N/A N/A G0L004 39022920
    870551 8rzh:A (1.83) BS01 A1H38 N/A N/A G0L004 39022920
    870552 8rzh:A (1.83) BS02 A1H38 N/A N/A G0L004 39022920
    870553 8rzh:B (1.83) BS01 A1H38 N/A N/A G0L004 39022920
    870554 8rzh:B (1.83) BS02 A1H38 N/A N/A G0L004 39022920
    870555 8rzh:C (1.83) BS01 A1H38 N/A N/A G0L004 39022920
    870556 8rzh:C (1.83) BS02 A1H38 N/A N/A G0L004 39022920
    870557 8rzh:D (1.83) BS01 A1H38 N/A N/A G0L004 39022920
    870558 8rzh:D (1.83) BS02 A1H38 N/A N/A G0L004 39022920
    870559 8rzi:A (1.96) BS01 A1H37 N/A N/A G0L004 39022920
    870560 8rzi:B (1.96) BS01 A1H37 N/A N/A G0L004 39022920
    870561 8rzi:C (1.96) BS01 A1H37 N/A N/A G0L004 39022920
    870562 8rzi:D (1.96) BS01 A1H37 N/A N/A G0L004 39022920
    870563 8rzj:A (1.99) BS01 A1H36 N/A N/A G0L004 39022920
    870564 8rzj:A (1.99) BS02 A1H36 N/A N/A G0L004 39022920
    870565 8rzj:B (1.99) BS01 A1H36 N/A N/A G0L004 39022920
    870566 8rzj:B (1.99) BS02 A1H36 N/A N/A G0L004 39022920
    870567 8rzj:C (1.99) BS01 A1H36 N/A N/A G0L004 39022920
    870568 8rzj:D (1.99) BS01 A1H36 N/A N/A G0L004 39022920
    870569 8rzj:D (1.99) BS02 A1H36 N/A N/A G0L004 39022920
    870570 8rzk:A (2.29) BS01 9RN N/A N/A G0L004 39022920
    870571 8rzk:A (2.29) BS02 GAL N/A N/A G0L004 39022920
    870572 8rzk:A (2.29) BS03 9RN N/A N/A G0L004 39022920
    870573 8rzk:A (2.29) BS04 9RN N/A N/A G0L004 39022920
    870574 8rzk:B (2.29) BS01 9RN N/A N/A G0L004 39022920
    870575 8rzk:B (2.29) BS02 GAL N/A N/A G0L004 39022920
    870576 8rzk:B (2.29) BS03 9RN N/A N/A G0L004 39022920
    870577 8rzk:C (2.29) BS01 9RN N/A N/A G0L004 39022920
    870578 8rzk:C (2.29) BS02 GAL N/A N/A G0L004 39022920
    870579 8rzk:C (2.29) BS03 9RN N/A N/A G0L004 39022920
    870580 8rzk:C (2.29) BS04 9RN N/A N/A G0L004 39022920
    870581 8rzk:D (2.29) BS01 9RN N/A N/A G0L004 39022920
    870582 8rzk:D (2.29) BS02 GAL N/A N/A G0L004 39022920
    870583 8rzk:D (2.29) BS03 9RN N/A N/A G0L004 39022920
    870584 8rzl:A (2.65) BS01 YZT ? N/A Q4JBK8 39614099
    870585 8rzl:A (2.65) BS02 MAN ? N/A Q4JBK8 39614099
    870586 8rzl:B (2.65) BS01 YZT ? N/A Q4JBK8 39614099
    870587 8rzl:B (2.65) BS02 MAN ? N/A Q4JBK8 39614099
    870588 8rzl:C (2.65) BS01 YZT ? N/A Q4JBK8 39614099
    870589 8rzl:C (2.65) BS02 MAN ? N/A Q4JBK8 39614099
    870590 8rzl:D (2.65) BS01 YZT ? N/A Q4JBK8 39614099
    870591 8rzl:D (2.65) BS02 MAN ? N/A Q4JBK8 39614099
    870592 8rzl:E (2.65) BS01 YZT ? N/A Q4JBK8 39614099
    870593 8rzl:E (2.65) BS02 MAN ? N/A Q4JBK8 39614099
    870594 8rzv:A (1.51) BS01 dna ? GO:0003676 ... P09651 N/A
    870595 8rzw:A (2.02) BS01 A1H4N 3.1.3.48 GO:0004725 ... Q06124 38462716
    870596 8rzw:B (2.02) BS01 A1H4N 3.1.3.48 GO:0004725 ... Q06124 38462716
    870597 8rzy:A (1.91) BS01 A1H4L 3.1.3.48 GO:0004725 ... Q06124 38462716
    870598 8rzy:B (1.91) BS01 A1H4L 3.1.3.48 GO:0004725 ... Q06124 38462716
    870599 8s00:A (2.0) BS01 A1H4W N/A GO:0000049 ... Q5CR27 39441903
    870600 8s00:A (2.0) BS02 LYS N/A GO:0000049 ... Q5CR27 39441903

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).