SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    870601 8s00:B (2.0) BS01 A1H4W N/A GO:0000049 ... Q5CR27 39441903
    870602 8s00:B (2.0) BS02 LYS N/A GO:0000049 ... Q5CR27 39441903
    870603 8s01:A (2.17) BS01 A1H4J 3.1.3.48 GO:0004725 ... Q06124 38462716
    870604 8s01:B (2.17) BS01 A1H4J 3.1.3.48 GO:0004725 ... Q06124 38462716
    870605 8s03:A (-1.00) BS01 CA ? N/A Q02817 38733585
    870606 8s04:A (1.89) BS01 A1H4I 3.1.3.48 GO:0004725 ... Q06124 38462716
    870607 8s04:B (1.89) BS01 A1H4I 3.1.3.48 GO:0004725 ... Q06124 38462716
    870608 8s06:A (2.19) BS01 A1H4M 3.1.3.48 GO:0004725 ... Q06124 38462716
    870609 8s06:B (2.19) BS01 A1H4M 3.1.3.48 GO:0004725 ... Q06124 38462716
    870610 8s07:A (1.83) BS01 A1H4K 3.1.3.48 GO:0004725 ... Q06124 38462716
    870611 8s07:B (1.83) BS01 A1H4K 3.1.3.48 GO:0004725 ... Q06124 38462716
    870612 8s09:2 (3.1) BS01 ATP N/A GO:0000727 ... P49736 39604733
    870613 8s09:2 (3.1) BS02 ZN N/A GO:0000727 ... P49736 39604733
    870614 8s09:2 (3.1) BS03 ADP N/A GO:0000727 ... P49736 39604733
    870615 8s09:3 (3.1) BS01 ADP N/A GO:0000727 ... P25205 39604733
    870616 8s09:4 (3.1) BS01 dna N/A GO:0000727 ... P33991 39604733
    870617 8s09:4 (3.1) BS02 ZN N/A GO:0000727 ... P33991 39604733
    870618 8s09:4 (3.1) BS03 ADP N/A GO:0000727 ... P33991 39604733
    870619 8s09:5 (3.1) BS01 dna N/A GO:0000727 ... P33992 39604733
    870620 8s09:5 (3.1) BS02 ADP N/A GO:0000727 ... P33992 39604733
    870621 8s09:5 (3.1) BS03 ADP N/A GO:0000727 ... P33992 39604733
    870622 8s09:5 (3.1) BS04 ZN N/A GO:0000727 ... P33992 39604733
    870623 8s09:6 (3.1) BS01 dna N/A GO:0000727 ... Q14566 39604733
    870624 8s09:6 (3.1) BS02 ADP N/A GO:0000727 ... Q14566 39604733
    870625 8s09:6 (3.1) BS03 ZN N/A GO:0000727 ... Q14566 39604733
    870626 8s09:7 (3.1) BS01 dna N/A GO:0000727 ... P33993 39604733
    870627 8s09:7 (3.1) BS02 ADP N/A GO:0000727 ... P33993 39604733
    870628 8s09:7 (3.1) BS03 ZN N/A GO:0000727 ... P33993 39604733
    870629 8s09:A (3.1) BS01 ATP N/A GO:0000727 ... P49736 39604733
    870630 8s09:A (3.1) BS02 ZN N/A GO:0000727 ... P49736 39604733
    870631 8s09:A (3.1) BS03 ADP N/A GO:0000727 ... P49736 39604733
    870632 8s09:B (3.1) BS01 ADP N/A GO:0000727 ... P25205 39604733
    870633 8s09:C (3.1) BS01 dna N/A GO:0000727 ... P33991 39604733
    870634 8s09:C (3.1) BS02 ZN N/A GO:0000727 ... P33991 39604733
    870635 8s09:C (3.1) BS03 ADP N/A GO:0000727 ... P33991 39604733
    870636 8s09:D (3.1) BS01 dna N/A GO:0000727 ... P33992 39604733
    870637 8s09:D (3.1) BS02 ADP N/A GO:0000727 ... P33992 39604733
    870638 8s09:D (3.1) BS03 ADP N/A GO:0000727 ... P33992 39604733
    870639 8s09:D (3.1) BS04 ZN N/A GO:0000727 ... P33992 39604733
    870640 8s09:E (3.1) BS01 ADP N/A GO:0000727 ... Q14566 39604733
    870641 8s09:E (3.1) BS02 ZN N/A GO:0000727 ... Q14566 39604733
    870642 8s09:F (3.1) BS01 ADP N/A GO:0000727 ... P33993 39604733
    870643 8s09:F (3.1) BS02 ZN N/A GO:0000727 ... P33993 39604733
    870644 8s0a:2 (3.2) BS01 ATP N/A GO:0000727 ... P49736 39604733
    870645 8s0a:2 (3.2) BS02 ZN N/A GO:0000727 ... P49736 39604733
    870646 8s0a:3 (3.2) BS01 dna N/A GO:0000727 ... P25205 39604733
    870647 8s0a:3 (3.2) BS02 ADP N/A GO:0000727 ... P25205 39604733
    870648 8s0a:3 (3.2) BS03 ADP N/A GO:0000727 ... P25205 39604733
    870649 8s0a:4 (3.2) BS01 dna N/A GO:0000727 ... P33991 39604733
    870650 8s0a:4 (3.2) BS02 dna N/A GO:0000727 ... P33991 39604733
    870651 8s0a:4 (3.2) BS03 ZN N/A GO:0000727 ... P33991 39604733
    870652 8s0a:4 (3.2) BS04 ADP N/A GO:0000727 ... P33991 39604733
    870653 8s0a:5 (3.2) BS01 ADP N/A GO:0000727 ... P33992 39604733
    870654 8s0a:5 (3.2) BS02 ADP N/A GO:0000727 ... P33992 39604733
    870655 8s0a:6 (3.2) BS01 ADP N/A GO:0000727 ... Q14566 39604733
    870656 8s0a:6 (3.2) BS02 ZN N/A GO:0000727 ... Q14566 39604733
    870657 8s0a:7 (3.2) BS01 dna N/A GO:0000727 ... P33993 39604733
    870658 8s0a:7 (3.2) BS02 dna N/A GO:0000727 ... P33993 39604733
    870659 8s0a:7 (3.2) BS03 ADP N/A GO:0000727 ... P33993 39604733
    870660 8s0a:7 (3.2) BS04 ZN N/A GO:0000727 ... P33993 39604733
    870661 8s0b:2 (3.6) BS01 AGS N/A GO:0000727 ... P49736 39604733
    870662 8s0b:2 (3.6) BS02 ZN N/A GO:0000727 ... P49736 39604733
    870663 8s0b:2 (3.6) BS03 ADP N/A GO:0000727 ... P49736 39604733
    870664 8s0b:3 (3.6) BS01 ADP N/A GO:0000727 ... P25205 39604733
    870665 8s0b:3 (3.6) BS02 MG N/A GO:0000727 ... P25205 39604733
    870666 8s0b:4 (3.6) BS01 dna N/A GO:0000727 ... P33991 39604733
    870667 8s0b:4 (3.6) BS02 ZN N/A GO:0000727 ... P33991 39604733
    870668 8s0b:4 (3.6) BS03 ADP N/A GO:0000727 ... P33991 39604733
    870669 8s0b:4 (3.6) BS04 AGS N/A GO:0000727 ... P33991 39604733
    870670 8s0b:5 (3.6) BS01 ADP N/A GO:0000727 ... P33992 39604733
    870671 8s0b:5 (3.6) BS02 ADP N/A GO:0000727 ... P33992 39604733
    870672 8s0b:5 (3.6) BS03 MG N/A GO:0000727 ... P33992 39604733
    870673 8s0b:5 (3.6) BS04 ZN N/A GO:0000727 ... P33992 39604733
    870674 8s0b:6 (3.6) BS01 AGS N/A GO:0000727 ... Q14566 39604733
    870675 8s0b:6 (3.6) BS02 ZN N/A GO:0000727 ... Q14566 39604733
    870676 8s0b:7 (3.6) BS01 ADP N/A GO:0000727 ... P33993 39604733
    870677 8s0b:7 (3.6) BS02 AGS N/A GO:0000727 ... P33993 39604733
    870678 8s0b:7 (3.6) BS03 ZN N/A GO:0000727 ... P33993 39604733
    870679 8s0c:D (4.0) BS01 AGS N/A GO:0000166 ... O43929 39604733
    870680 8s0c:E (4.0) BS01 AGS N/A GO:0000166 ... O43913 39604733
    870681 8s0d:2 (3.6) BS01 AGS N/A GO:0000727 ... P49736 39604733
    870682 8s0d:2 (3.6) BS02 ZN N/A GO:0000727 ... P49736 39604733
    870683 8s0d:2 (3.6) BS03 ADP N/A GO:0000727 ... P49736 39604733
    870684 8s0d:3 (3.6) BS01 ADP N/A GO:0000727 ... P25205 39604733
    870685 8s0d:3 (3.6) BS02 MG N/A GO:0000727 ... P25205 39604733
    870686 8s0d:3 (3.6) BS03 AGS N/A GO:0000727 ... P25205 39604733
    870687 8s0d:4 (3.6) BS01 dna N/A GO:0000727 ... P33991 39604733
    870688 8s0d:4 (3.6) BS02 ZN N/A GO:0000727 ... P33991 39604733
    870689 8s0d:4 (3.6) BS03 ADP N/A GO:0000727 ... P33991 39604733
    870690 8s0d:4 (3.6) BS04 AGS N/A GO:0000727 ... P33991 39604733
    870691 8s0d:5 (3.6) BS01 ADP N/A GO:0000727 ... P33992 39604733
    870692 8s0d:5 (3.6) BS02 ADP N/A GO:0000727 ... P33992 39604733
    870693 8s0d:5 (3.6) BS03 MG N/A GO:0000727 ... P33992 39604733
    870694 8s0d:5 (3.6) BS04 ZN N/A GO:0000727 ... P33992 39604733
    870695 8s0d:6 (3.6) BS01 dna N/A GO:0000727 ... Q14566 39604733
    870696 8s0d:6 (3.6) BS02 AGS N/A GO:0000727 ... Q14566 39604733
    870697 8s0d:6 (3.6) BS03 ZN N/A GO:0000727 ... Q14566 39604733
    870698 8s0d:7 (3.6) BS01 ADP N/A GO:0000727 ... P33993 39604733
    870699 8s0d:7 (3.6) BS02 AGS N/A GO:0000727 ... P33993 39604733
    870700 8s0d:7 (3.6) BS03 ZN N/A GO:0000727 ... P33993 39604733
    870701 8s0d:D (3.6) BS01 AGS N/A GO:0000166 ... O43929 39604733
    870702 8s0d:E (3.6) BS01 AGS N/A GO:0000166 ... O43913 39604733
    870703 8s0e:2 (3.8) BS01 AGS N/A GO:0000727 ... P49736 39604733
    870704 8s0e:4 (3.8) BS01 ZN N/A GO:0000727 ... P33991 39604733
    870705 8s0e:4 (3.8) BS02 AGS N/A GO:0000727 ... P33991 39604733
    870706 8s0e:6 (3.8) BS01 dna N/A GO:0000727 ... Q14566 39604733
    870707 8s0e:6 (3.8) BS02 AGS N/A GO:0000727 ... Q14566 39604733
    870708 8s0e:6 (3.8) BS03 AGS N/A GO:0000727 ... Q14566 39604733
    870709 8s0e:A (3.8) BS01 AGS N/A GO:0000781 ... Q13415 39604733
    870710 8s0e:D (3.8) BS01 AGS N/A GO:0000166 ... O43929 39604733
    870711 8s0e:E (3.8) BS01 AGS N/A GO:0000166 ... O43913 39604733
    870712 8s0f:2 (4.1) BS01 AGS N/A GO:0000727 ... P49736 39604733
    870713 8s0f:4 (4.1) BS01 ZN N/A GO:0000727 ... P33991 39604733
    870714 8s0f:4 (4.1) BS02 AGS N/A GO:0000727 ... P33991 39604733
    870715 8s0f:6 (4.1) BS01 dna N/A GO:0000727 ... Q14566 39604733
    870716 8s0f:6 (4.1) BS02 AGS N/A GO:0000727 ... Q14566 39604733
    870717 8s0f:6 (4.1) BS03 AGS N/A GO:0000727 ... Q14566 39604733
    870718 8s0f:A (4.1) BS01 AGS N/A GO:0000781 ... Q13415 39604733
    870719 8s0f:D (4.1) BS01 AGS N/A GO:0000166 ... O43929 39604733
    870720 8s0f:E (4.1) BS01 AGS N/A GO:0000166 ... O43913 39604733
    870721 8s0h:A (1.99) BS01 A1H4Q 3.1.3.48 GO:0004725 ... Q06124 38462716
    870722 8s0h:B (1.99) BS01 A1H4Q 3.1.3.48 GO:0004725 ... Q06124 38462716
    870723 8s0i:A (1.929) BS01 A1H4P 3.1.3.48 GO:0004725 ... Q06124 38462716
    870724 8s0i:B (1.929) BS01 A1H4P 3.1.3.48 GO:0004725 ... Q06124 38462716
    870725 8s0j:A (1.89) BS01 A1H4R 3.1.3.48 GO:0004725 ... Q06124 38462716
    870726 8s0j:B (1.89) BS01 A1H4R 3.1.3.48 GO:0004725 ... Q06124 38462716
    870727 8s0k:A (1.84) BS01 A1H4S 3.1.3.48 GO:0004725 ... Q06124 38462716
    870728 8s0k:B (1.84) BS01 A1H4S 3.1.3.48 GO:0004725 ... Q06124 38462716
    870729 8s0l:A (1.8) BS01 CA N/A GO:0004252 ... O15393 38964326
    870730 8s0o:A (1.834) BS01 A1H4G 3.1.3.48 GO:0004725 ... Q06124 38462716
    870731 8s0o:B (1.834) BS01 A1H4G 3.1.3.48 GO:0004725 ... Q06124 38462716
    870732 8s0p:A (2.0) BS01 A1H4O 3.1.3.48 GO:0004725 ... Q06124 38462716
    870733 8s0p:B (2.0) BS01 A1H4O 3.1.3.48 GO:0004725 ... Q06124 38462716
    870734 8s0q:A (1.872) BS01 A1H4T 3.1.3.48 GO:0004725 ... Q06124 38462716
    870735 8s0q:B (1.872) BS01 A1H4T 3.1.3.48 GO:0004725 ... Q06124 38462716
    870736 8s0r:J (2.4) BS01 A1H46 N/A N/A P50613 N/A
    870737 8s0s:A (1.94) BS01 A1H4H 3.1.3.48 GO:0004725 ... Q06124 38462716
    870738 8s0s:B (1.94) BS01 A1H4H 3.1.3.48 GO:0004725 ... Q06124 38462716
    870739 8s0t:J (2.3) BS01 YNK N/A N/A P50613 N/A
    870740 8s0w:A (1.05) BS01 CU N/A GO:0005507 ... Q89EJ6 39002715
    870741 8s0w:A (1.05) BS02 CU N/A GO:0005507 ... Q89EJ6 39002715
    870742 8s0w:A (1.05) BS03 FRU N/A GO:0005507 ... Q89EJ6 39002715
    870743 8s1j:A (1.83) BS01 HEM N/A N/A N/A 39053683
    870744 8s1j:B (1.83) BS01 HEM N/A N/A N/A 39053683
    870745 8s1k:A (1.22) BS01 A1H4Y ? GO:0005324 ... P15090 N/A
    870746 8s1p:0 (1.96) BS01 rna ? GO:0003735 ... O34687 38811035
    870747 8s1p:0 (1.96) BS02 ZN ? GO:0003735 ... O34687 38811035
    870748 8s1p:1 (1.96) BS01 rna ? GO:0003735 ... P56849 38811035
    870749 8s1p:1 (1.96) BS02 ZN ? GO:0003735 ... P56849 38811035
    870750 8s1p:2 (1.96) BS01 rna ? GO:0003735 ... P05647 38811035
    870751 8s1p:3 (1.96) BS01 rna ? GO:0003735 ... P55874 38811035
    870752 8s1p:4 (1.96) BS01 rna ? GO:0003735 ... P20278 38811035
    870753 8s1p:4 (1.96) BS02 ZN ? GO:0003735 ... P20278 38811035
    870754 8s1p:6 (1.96) BS01 rna ? GO:0003735 ... Q03223 38811035
    870755 8s1p:6 (1.96) BS02 ZN ? GO:0003735 ... Q03223 38811035
    870756 8s1p:C (1.96) BS01 rna ? GO:0002181 ... P42919 38811035
    870757 8s1p:D (1.96) BS01 rna ? GO:0003735 ... P42920 38811035
    870758 8s1p:E (1.96) BS01 rna ? GO:0003735 ... P42921 38811035
    870759 8s1p:F (1.96) BS01 rna ? GO:0000049 ... P12877 38811035
    870760 8s1p:F (1.96) BS02 rna ? GO:0000049 ... P12877 38811035
    870761 8s1p:F (1.96) BS03 rna ? GO:0000049 ... P12877 38811035
    870762 8s1p:G (1.96) BS01 rna ? GO:0002181 ... P46898 38811035
    870763 8s1p:J (1.96) BS01 rna ? GO:0003729 ... P70974 38811035
    870764 8s1p:K (1.96) BS01 rna ? GO:0003735 ... P12875 38811035
    870765 8s1p:L (1.96) BS01 rna ? GO:0003735 ... P19946 38811035
    870766 8s1p:M (1.96) BS01 rna ? GO:0000049 ... P14577 38811035
    870767 8s1p:M (1.96) BS02 rna ? GO:0000049 ... P14577 38811035
    870768 8s1p:N (1.96) BS01 rna ? GO:0003735 ... P20277 38811035
    870769 8s1p:N (1.96) BS02 MG ? GO:0003735 ... P20277 38811035
    870770 8s1p:O (1.96) BS01 rna ? GO:0003735 ... P46899 38811035
    870771 8s1p:O (1.96) BS02 rna ? GO:0003735 ... P46899 38811035
    870772 8s1p:P (1.96) BS01 rna ? GO:0003735 ... O31742 38811035
    870773 8s1p:Q (1.96) BS01 rna ? GO:0000027 ... P55873 38811035
    870774 8s1p:R (1.96) BS01 rna ? GO:0003723 ... P26908 38811035
    870775 8s1p:S (1.96) BS01 rna ? GO:0003735 ... P42060 38811035
    870776 8s1p:T (1.96) BS01 rna ? GO:0003735 ... P42924 38811035
    870777 8s1p:U (1.96) BS01 rna ? GO:0003677 ... P0CI78 38811035
    870778 8s1p:V (1.96) BS01 rna ? GO:0000049 ... P71020 38811035
    870779 8s1p:W (1.96) BS01 rna ? GO:0003735 ... P05657 38811035
    870780 8s1p:W (1.96) BS02 rna ? GO:0003735 ... P05657 38811035
    870781 8s1p:X (1.96) BS01 rna ? GO:0003735 ... P37807 38811035
    870782 8s1p:Y (1.96) BS01 rna ? GO:0003735 ... P12873 38811035
    870783 8s1p:Z (1.96) BS01 rna ? GO:0003735 ... P19947 38811035
    870784 8s1p:Z (1.96) BS02 rna ? GO:0003735 ... P19947 38811035
    870785 8s1r:AAA (1.979) BS01 peptide N/A N/A Q9Y566 38899489
    870786 8s1r:AAA (1.979) BS02 peptide N/A N/A Q9Y566 38899489
    870787 8s1r:BBB (1.979) BS01 peptide N/A N/A Q9Y566 38899489
    870788 8s1r:CCC (1.979) BS01 peptide N/A N/A Q9Y566 38899489
    870789 8s1r:DDD (1.979) BS01 peptide N/A N/A Q9Y566 38899489
    870790 8s1u:0 (3.4) BS01 rna ? GO:0003735 ... O34687 38811035
    870791 8s1u:1 (3.4) BS01 rna ? GO:0003735 ... P56849 38811035
    870792 8s1u:2 (3.4) BS01 rna ? GO:0003735 ... P05647 38811035
    870793 8s1u:3 (3.4) BS01 rna ? GO:0003735 ... P55874 38811035
    870794 8s1u:4 (3.4) BS01 rna ? GO:0003735 ... P20278 38811035
    870795 8s1u:6 (3.4) BS01 rna ? GO:0003735 ... Q03223 38811035
    870796 8s1u:C (3.4) BS01 rna ? GO:0002181 ... P42919 38811035
    870797 8s1u:D (3.4) BS01 rna ? GO:0003735 ... P42920 38811035
    870798 8s1u:E (3.4) BS01 rna ? GO:0003735 ... P42921 38811035
    870799 8s1u:F (3.4) BS01 rna ? GO:0000049 ... P12877 38811035
    870800 8s1u:F (3.4) BS02 rna ? GO:0000049 ... P12877 38811035

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).