SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    870801 8s1u:F (3.4) BS03 rna ? GO:0000049 ... P12877 38811035
    870802 8s1u:G (3.4) BS01 rna ? GO:0002181 ... P46898 38811035
    870803 8s1u:H (3.4) BS01 rna ? GO:0000049 ... O34693 38811035
    870804 8s1u:J (3.4) BS01 rna ? GO:0003729 ... P70974 38811035
    870805 8s1u:K (3.4) BS01 rna ? GO:0003735 ... P12875 38811035
    870806 8s1u:L (3.4) BS01 rna ? GO:0003735 ... P19946 38811035
    870807 8s1u:M (3.4) BS01 rna ? GO:0000049 ... P14577 38811035
    870808 8s1u:M (3.4) BS02 rna ? GO:0000049 ... P14577 38811035
    870809 8s1u:N (3.4) BS01 rna ? GO:0003735 ... P20277 38811035
    870810 8s1u:O (3.4) BS01 rna ? GO:0003735 ... P46899 38811035
    870811 8s1u:O (3.4) BS02 rna ? GO:0003735 ... P46899 38811035
    870812 8s1u:P (3.4) BS01 rna ? GO:0003735 ... O31742 38811035
    870813 8s1u:Q (3.4) BS01 rna ? GO:0000027 ... P55873 38811035
    870814 8s1u:R (3.4) BS01 rna ? GO:0003723 ... P26908 38811035
    870815 8s1u:S (3.4) BS01 rna ? GO:0003735 ... P42060 38811035
    870816 8s1u:T (3.4) BS01 rna ? GO:0003735 ... P42924 38811035
    870817 8s1u:U (3.4) BS01 rna ? GO:0003677 ... P0CI78 38811035
    870818 8s1u:V (3.4) BS01 rna ? GO:0000049 ... P71020 38811035
    870819 8s1u:V (3.4) BS02 rna ? GO:0000049 ... P71020 38811035
    870820 8s1u:W (3.4) BS01 rna ? GO:0003735 ... P05657 38811035
    870821 8s1u:W (3.4) BS02 rna ? GO:0003735 ... P05657 38811035
    870822 8s1u:X (3.4) BS01 rna ? GO:0003735 ... P37807 38811035
    870823 8s1u:Y (3.4) BS01 rna ? GO:0003735 ... P12873 38811035
    870824 8s1u:Z (3.4) BS01 rna ? GO:0003735 ... P19947 38811035
    870825 8s1u:Z (3.4) BS02 rna ? GO:0003735 ... P19947 38811035
    870826 8s1x:A (1.88) BS01 ZN N/A GO:0006412 ... Q9I7A8 39814890
    870827 8s1x:A (1.88) BS02 BB2 N/A GO:0006412 ... Q9I7A8 39814890
    870828 8s1x:B (1.88) BS01 BB2 N/A N/A N/A 39814890
    870829 8s1z:A (3.8) BS01 CA N/A N/A Q16853 N/A
    870830 8s1z:A (3.8) BS02 CA N/A N/A Q16853 N/A
    870831 8s1z:A (3.8) BS03 CU N/A N/A Q16853 N/A
    870832 8s1z:B (3.8) BS01 CA N/A N/A Q16853 N/A
    870833 8s1z:B (3.8) BS02 CA N/A N/A Q16853 N/A
    870834 8s1z:B (3.8) BS03 CU N/A N/A Q16853 N/A
    870835 8s1z:C (3.8) BS01 CA N/A N/A Q16853 N/A
    870836 8s1z:C (3.8) BS02 CA N/A N/A Q16853 N/A
    870837 8s1z:C (3.8) BS03 CU N/A N/A Q16853 N/A
    870838 8s1z:D (3.8) BS01 CA N/A N/A Q16853 N/A
    870839 8s1z:D (3.8) BS02 CA N/A N/A Q16853 N/A
    870840 8s1z:D (3.8) BS03 CU N/A N/A Q16853 N/A
    870841 8s24:A (3.0) BS01 ATP N/A GO:0001525 ... Q63HN8 39375464
    870842 8s24:A (3.0) BS02 MG N/A GO:0001525 ... Q63HN8 39375464
    870843 8s24:A (3.0) BS03 ZN N/A GO:0001525 ... Q63HN8 39375464
    870844 8s2e:E (3.8) BS01 MAN N/A GO:0019031 ... N/A 38903123
    870845 8s2q:A (1.05) BS01 CU N/A GO:0005507 ... Q89EJ6 39002715
    870846 8s2q:A (1.05) BS02 CU N/A GO:0005507 ... Q89EJ6 39002715
    870847 8s2q:A (1.05) BS03 FRU N/A GO:0005507 ... Q89EJ6 39002715
    870848 8s30:A (1.94) BS01 peptide N/A N/A P53350 39236175
    870849 8s31:A (2.134) BS01 peptide N/A N/A P53350 39236175
    870850 8s31:B (2.134) BS01 peptide N/A N/A P53350 39236175
    870851 8s32:A (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    870852 8s32:B (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    870853 8s32:C (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    870854 8s32:D (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    870855 8s32:E (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    870856 8s32:F (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    870857 8s32:G (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    870858 8s32:H (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    870859 8s32:I (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    870860 8s32:J (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    870861 8s32:K (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    870862 8s32:L (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    870863 8s32:M (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    870864 8s32:N (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    870865 8s35:A (2.9) BS01 rna N/A N/A A0A333ESG5 39468082
    870866 8s35:A (2.9) BS02 dna N/A N/A A0A333ESG5 39468082
    870867 8s35:A (2.9) BS03 dna N/A N/A A0A333ESG5 39468082
    870868 8s35:B (2.9) BS01 rna N/A N/A A0A333ESG5 39468082
    870869 8s35:B (2.9) BS02 dna N/A N/A A0A333ESG5 39468082
    870870 8s35:B (2.9) BS03 dna N/A N/A A0A333ESG5 39468082
    870871 8s35:C (2.9) BS01 rna N/A N/A A0A333ESG5 39468082
    870872 8s35:C (2.9) BS02 dna N/A N/A A0A333ESG5 39468082
    870873 8s35:D (2.9) BS01 rna N/A N/A A0A333ESG5 39468082
    870874 8s35:D (2.9) BS02 dna N/A N/A A0A333ESG5 39468082
    870875 8s35:E (2.9) BS01 rna N/A N/A A0A333ESG5 39468082
    870876 8s35:F (2.9) BS01 rna N/A N/A A0A8G1XN67 39468082
    870877 8s35:F (2.9) BS02 dna N/A N/A A0A8G1XN67 39468082
    870878 8s35:F (2.9) BS03 dna N/A N/A A0A8G1XN67 39468082
    870879 8s35:G (2.9) BS01 dna N/A N/A A0A7Z7WW72 39468082
    870880 8s35:G (2.9) BS02 dna N/A N/A A0A7Z7WW72 39468082
    870881 8s35:G (2.9) BS03 ZN N/A N/A A0A7Z7WW72 39468082
    870882 8s35:L (2.9) BS01 rna N/A N/A A0A333ESG5 39468082
    870883 8s35:M (2.9) BS01 dna N/A GO:0003678 ... A0A422ZM74 39468082
    870884 8s36:A (2.9) BS01 rna N/A N/A A0A333ESG5 39468082
    870885 8s36:A (2.9) BS02 dna N/A N/A A0A333ESG5 39468082
    870886 8s36:A (2.9) BS03 dna N/A N/A A0A333ESG5 39468082
    870887 8s36:B (2.9) BS01 rna N/A N/A A0A333ESG5 39468082
    870888 8s36:B (2.9) BS02 dna N/A N/A A0A333ESG5 39468082
    870889 8s36:B (2.9) BS03 dna N/A N/A A0A333ESG5 39468082
    870890 8s36:C (2.9) BS01 rna N/A N/A A0A333ESG5 39468082
    870891 8s36:C (2.9) BS02 dna N/A N/A A0A333ESG5 39468082
    870892 8s36:D (2.9) BS01 rna N/A N/A A0A333ESG5 39468082
    870893 8s36:D (2.9) BS02 dna N/A N/A A0A333ESG5 39468082
    870894 8s36:E (2.9) BS01 rna N/A N/A A0A333ESG5 39468082
    870895 8s36:E (2.9) BS02 dna N/A N/A A0A333ESG5 39468082
    870896 8s36:F (2.9) BS01 rna N/A N/A A0A8G1XN67 39468082
    870897 8s36:F (2.9) BS02 dna N/A N/A A0A8G1XN67 39468082
    870898 8s36:F (2.9) BS03 dna N/A N/A A0A8G1XN67 39468082
    870899 8s36:G (2.9) BS01 dna N/A N/A A0A7Z7WW72 39468082
    870900 8s36:G (2.9) BS02 dna N/A N/A A0A7Z7WW72 39468082
    870901 8s36:G (2.9) BS03 ZN N/A N/A A0A7Z7WW72 39468082
    870902 8s36:L (2.9) BS01 rna N/A N/A A0A333ESG5 39468082
    870903 8s36:M (2.9) BS01 dna N/A GO:0003678 ... A0A422ZM74 39468082
    870904 8s37:A (2.9) BS01 rna N/A N/A A0A333ESG5 39468082
    870905 8s37:A (2.9) BS02 dna N/A N/A A0A333ESG5 39468082
    870906 8s37:A (2.9) BS03 dna N/A N/A A0A333ESG5 39468082
    870907 8s37:B (2.9) BS01 rna N/A N/A A0A333ESG5 39468082
    870908 8s37:B (2.9) BS02 dna N/A N/A A0A333ESG5 39468082
    870909 8s37:B (2.9) BS03 dna N/A N/A A0A333ESG5 39468082
    870910 8s37:C (2.9) BS01 rna N/A N/A A0A333ESG5 39468082
    870911 8s37:C (2.9) BS02 dna N/A N/A A0A333ESG5 39468082
    870912 8s37:D (2.9) BS01 rna N/A N/A A0A333ESG5 39468082
    870913 8s37:D (2.9) BS02 dna N/A N/A A0A333ESG5 39468082
    870914 8s37:E (2.9) BS01 rna N/A N/A A0A333ESG5 39468082
    870915 8s37:E (2.9) BS02 dna N/A N/A A0A333ESG5 39468082
    870916 8s37:F (2.9) BS01 rna N/A N/A A0A8G1XN67 39468082
    870917 8s37:F (2.9) BS02 dna N/A N/A A0A8G1XN67 39468082
    870918 8s37:F (2.9) BS03 dna N/A N/A A0A8G1XN67 39468082
    870919 8s37:G (2.9) BS01 dna N/A N/A A0A7Z7WW72 39468082
    870920 8s37:G (2.9) BS02 dna N/A N/A A0A7Z7WW72 39468082
    870921 8s37:G (2.9) BS03 ZN N/A N/A A0A7Z7WW72 39468082
    870922 8s37:L (2.9) BS01 rna N/A N/A A0A333ESG5 39468082
    870923 8s37:M (2.9) BS01 dna N/A GO:0003678 ... A0A422ZM74 39468082
    870924 8s38:A (1.89) BS01 NAD N/A GO:0000166 ... G7JYL4 39142482
    870925 8s38:B (1.89) BS01 CA N/A GO:0000166 ... G7JYL4 39142482
    870926 8s38:C (1.89) BS01 NAD N/A GO:0000166 ... G7JYL4 39142482
    870927 8s38:C (1.89) BS02 CA N/A GO:0000166 ... G7JYL4 39142482
    870928 8s39:A (2.0) BS01 NAD N/A GO:0000166 ... G7JYL4 39142482
    870929 8s39:A (2.0) BS02 CA N/A GO:0000166 ... G7JYL4 39142482
    870930 8s39:B (2.0) BS01 NAD N/A GO:0000166 ... G7JYL4 39142482
    870931 8s39:B (2.0) BS02 CA N/A GO:0000166 ... G7JYL4 39142482
    870932 8s39:C (2.0) BS01 NAD N/A GO:0000166 ... G7JYL4 39142482
    870933 8s39:C (2.0) BS02 8G0 N/A GO:0000166 ... G7JYL4 39142482
    870934 8s3a:A (1.85) BS01 NAD N/A GO:0000166 ... G7JYL4 39142482
    870935 8s3a:B (1.85) BS01 NAD N/A GO:0000166 ... G7JYL4 39142482
    870936 8s3a:C (1.85) BS01 NAD N/A GO:0000166 ... G7JYL4 39142482
    870937 8s3a:D (1.85) BS01 NAD N/A GO:0000166 ... G7JYL4 39142482
    870938 8s3a:E (1.85) BS01 PDC N/A GO:0000166 ... G7JYL4 39142482
    870939 8s3a:E (1.85) BS02 NAD N/A GO:0000166 ... G7JYL4 39142482
    870940 8s3a:F (1.85) BS01 PDC N/A GO:0000166 ... G7JYL4 39142482
    870941 8s3a:F (1.85) BS02 NAD N/A GO:0000166 ... G7JYL4 39142482
    870942 8s3b:A (2.3) BS01 A1H40 N/A GO:0000166 ... G7JYL4 39142482
    870943 8s3b:A (2.3) BS02 NAD N/A GO:0000166 ... G7JYL4 39142482
    870944 8s3b:A (2.3) BS03 CA N/A GO:0000166 ... G7JYL4 39142482
    870945 8s3b:B (2.3) BS01 A1H40 N/A GO:0000166 ... G7JYL4 39142482
    870946 8s3b:B (2.3) BS02 NAD N/A GO:0000166 ... G7JYL4 39142482
    870947 8s3b:B (2.3) BS03 CA N/A GO:0000166 ... G7JYL4 39142482
    870948 8s3b:C (2.3) BS01 A1H40 N/A GO:0000166 ... G7JYL4 39142482
    870949 8s3b:C (2.3) BS02 NAD N/A GO:0000166 ... G7JYL4 39142482
    870950 8s3b:C (2.3) BS03 CA N/A GO:0000166 ... G7JYL4 39142482
    870951 8s3b:D (2.3) BS01 A1H40 N/A GO:0000166 ... G7JYL4 39142482
    870952 8s3b:D (2.3) BS02 NAD N/A GO:0000166 ... G7JYL4 39142482
    870953 8s3b:D (2.3) BS03 CA N/A GO:0000166 ... G7JYL4 39142482
    870954 8s3b:E (2.3) BS01 NAD N/A GO:0000166 ... G7JYL4 39142482
    870955 8s3b:E (2.3) BS02 CA N/A GO:0000166 ... G7JYL4 39142482
    870956 8s3b:F (2.3) BS01 NAD N/A GO:0000166 ... G7JYL4 39142482
    870957 8s3b:F (2.3) BS02 CA N/A GO:0000166 ... G7JYL4 39142482
    870958 8s3b:G (2.3) BS01 NAD N/A GO:0000166 ... G7JYL4 39142482
    870959 8s3b:G (2.3) BS02 CA N/A GO:0000166 ... G7JYL4 39142482
    870960 8s3b:H (2.3) BS01 A1H40 N/A GO:0000166 ... G7JYL4 39142482
    870961 8s3b:H (2.3) BS02 NAD N/A GO:0000166 ... G7JYL4 39142482
    870962 8s3b:H (2.3) BS03 CA N/A GO:0000166 ... G7JYL4 39142482
    870963 8s3b:I (2.3) BS01 NAD N/A GO:0000166 ... G7JYL4 39142482
    870964 8s3b:I (2.3) BS02 CA N/A GO:0000166 ... G7JYL4 39142482
    870965 8s3b:J (2.3) BS01 NAD N/A GO:0000166 ... G7JYL4 39142482
    870966 8s3b:J (2.3) BS02 CA N/A GO:0000166 ... G7JYL4 39142482
    870967 8s3b:K (2.3) BS01 A1H40 N/A GO:0000166 ... G7JYL4 39142482
    870968 8s3b:K (2.3) BS02 NAD N/A GO:0000166 ... G7JYL4 39142482
    870969 8s3b:K (2.3) BS03 CA N/A GO:0000166 ... G7JYL4 39142482
    870970 8s3b:L (2.3) BS01 NAD N/A GO:0000166 ... G7JYL4 39142482
    870971 8s3b:L (2.3) BS02 CA N/A GO:0000166 ... G7JYL4 39142482
    870972 8s3c:B (2.2) BS01 CA N/A GO:0000166 ... G7JYL4 39142482
    870973 8s3d:A (1.65) BS01 NAD N/A GO:0000166 ... G7JYL4 39142482
    870974 8s3d:A (1.65) BS02 8GL N/A GO:0000166 ... G7JYL4 39142482
    870975 8s3d:A (1.65) BS03 CA N/A GO:0000166 ... G7JYL4 39142482
    870976 8s3d:A (1.65) BS04 GLY N/A GO:0000166 ... G7JYL4 39142482
    870977 8s3d:B (1.65) BS01 NAD N/A GO:0000166 ... G7JYL4 39142482
    870978 8s3d:B (1.65) BS02 8GL N/A GO:0000166 ... G7JYL4 39142482
    870979 8s3d:B (1.65) BS03 GLY N/A GO:0000166 ... G7JYL4 39142482
    870980 8s3d:B (1.65) BS04 CA N/A GO:0000166 ... G7JYL4 39142482
    870981 8s3d:C (1.65) BS01 NAD N/A GO:0000166 ... G7JYL4 39142482
    870982 8s3d:C (1.65) BS02 8GL N/A GO:0000166 ... G7JYL4 39142482
    870983 8s3d:C (1.65) BS03 GLY N/A GO:0000166 ... G7JYL4 39142482
    870984 8s3d:C (1.65) BS04 CA N/A GO:0000166 ... G7JYL4 39142482
    870985 8s3d:D (1.65) BS01 NAD N/A GO:0000166 ... G7JYL4 39142482
    870986 8s3d:D (1.65) BS02 8GL N/A GO:0000166 ... G7JYL4 39142482
    870987 8s3d:D (1.65) BS03 CA N/A GO:0000166 ... G7JYL4 39142482
    870988 8s3d:D (1.65) BS04 GLY N/A GO:0000166 ... G7JYL4 39142482
    870989 8s3d:E (1.65) BS01 NAD N/A GO:0000166 ... G7JYL4 39142482
    870990 8s3d:E (1.65) BS02 8GL N/A GO:0000166 ... G7JYL4 39142482
    870991 8s3d:E (1.65) BS03 GLY N/A GO:0000166 ... G7JYL4 39142482
    870992 8s3d:E (1.65) BS04 CA N/A GO:0000166 ... G7JYL4 39142482
    870993 8s3d:F (1.65) BS01 NAD N/A GO:0000166 ... G7JYL4 39142482
    870994 8s3d:F (1.65) BS02 8GL N/A GO:0000166 ... G7JYL4 39142482
    870995 8s3d:F (1.65) BS03 CA N/A GO:0000166 ... G7JYL4 39142482
    870996 8s3d:F (1.65) BS04 GLY N/A GO:0000166 ... G7JYL4 39142482
    870997 8s3e:A (2.39) BS01 CLR ? GO:0005216 ... Q9BG98 38553946
    870998 8s3e:A (2.39) BS02 CLR ? GO:0005216 ... Q9BG98 38553946
    870999 8s3e:A (2.39) BS03 CA ? GO:0005216 ... Q9BG98 38553946
    871000 8s3e:A (2.39) BS04 CA ? GO:0005216 ... Q9BG98 38553946

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).