SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    870801 8r9i:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0003009 ... P68082 38355794
    870802 8r9j:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0003009 ... P68082 38355794
    870803 8r9k:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0003009 ... P68082 38355794
    870804 8r9l:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0003009 ... P68082 38355794
    870805 8r9m:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0003009 ... P68082 38355794
    870806 8r9n:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0003009 ... P68082 38355794
    870807 8r9o:A (2.22) BS01 YN3 2.7.11.22
    2.7.11.23
    GO:0000439 ... P50613 38870939
    870808 8r9o:B (2.22) BS01 YN3 2.7.11.22
    2.7.11.23
    GO:0000439 ... P50613 38870939
    870809 8r9p:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0003009 ... P68082 38355794
    870810 8r9q:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0003009 ... P68082 38355794
    870811 8r9r:A (2.42) BS01 GDP ? GO:0003924 ... A4Y8J9 38376823
    870812 8r9s:A (2.78) BS01 YPK 2.7.11.22
    2.7.11.23
    GO:0000439 ... P50613 38870939
    870813 8r9s:B (2.78) BS01 YPK 2.7.11.22
    2.7.11.23
    GO:0000439 ... P50613 38870939
    870814 8r9t:A (1.4) BS01 CA N/A N/A A0A2K3CYA1 39255848
    870815 8r9u:A (1.937) BS01 YNK 2.7.11.22
    2.7.11.23
    GO:0000439 ... P50613 38870939
    870816 8r9u:B (1.937) BS01 YNK 2.7.11.22
    2.7.11.23
    GO:0000439 ... P50613 38870939
    870817 8r9v:A (4.4) BS01 PO4 N/A GO:0003774 ... Q99104 40205053
    870818 8r9v:A (4.4) BS02 MG N/A GO:0003774 ... Q99104 40205053
    870819 8r9v:A (4.4) BS03 ADP N/A GO:0003774 ... Q99104 40205053
    870820 8r9v:B (4.4) BS01 ADP N/A GO:0000287 ... P68135 40205053
    870821 8r9v:C (4.4) BS01 ADP N/A GO:0000287 ... P68135 40205053
    870822 8r9v:D (4.4) BS01 ADP N/A GO:0000287 ... P68135 40205053
    870823 8r9x:L (3.1) BS01 FUC N/A N/A N/A 38909062
    870824 8ra1:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0003009 ... P68082 38355794
    870825 8ra2:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0003009 ... P68082 38355794
    870826 8ra3:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0003009 ... P68082 38355794
    870827 8ra4:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0003009 ... P68082 38355794
    870828 8ra5:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0003009 ... P68082 38355794
    870829 8ra6:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0003009 ... P68082 38355794
    870830 8ra7:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0003009 ... P68082 38355794
    870831 8ra8:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0003009 ... P68082 38355794
    870832 8ra9:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0003009 ... P68082 38355794
    870833 8raa:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0003009 ... P68082 38355794
    870834 8rab:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0003009 ... P68082 38355794
    870835 8rac:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0003009 ... P68082 38355794
    870836 8rad:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0003009 ... P68082 38355794
    870837 8rae:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0003009 ... P68082 38355794
    870838 8raf:A (2.0) BS01 PLP ? GO:0003824 ... F4KWH0 38649133
    870839 8rai:A (2.0) BS01 ZXN ? GO:0003824 ... F4KWH0 38649133
    870840 8rak:A (1.85) BS01 FMN N/A GO:0004152 ... Q02127 38805244
    870841 8rak:A (1.85) BS02 YMH N/A GO:0004152 ... Q02127 38805244
    870842 8ral:A (2.1) BS01 peptide N/A GO:0006955 ... P14434 N/A
    870843 8ral:B (2.1) BS01 peptide N/A GO:0006955 ... P14483 N/A
    870844 8ram:A (2.8) BS01 dna N/A GO:0001172 ... P04050 39424994
    870845 8ram:A (2.8) BS02 rna N/A GO:0001172 ... P04050 39424994
    870846 8ram:A (2.8) BS03 dna N/A GO:0001172 ... P04050 39424994
    870847 8ram:A (2.8) BS04 ZN N/A GO:0001172 ... P04050 39424994
    870848 8ram:A (2.8) BS05 MG N/A GO:0001172 ... P04050 39424994
    870849 8ram:B (2.8) BS01 rna N/A GO:0001172 ... P08518 39424994
    870850 8ram:B (2.8) BS02 dna N/A GO:0001172 ... P08518 39424994
    870851 8ram:B (2.8) BS03 ZN N/A GO:0001172 ... P08518 39424994
    870852 8ram:C (2.8) BS01 ZN N/A GO:0000428 ... P16370 39424994
    870853 8ram:E (2.8) BS01 dna N/A GO:0001172 ... P20434 39424994
    870854 8ram:I (2.8) BS01 ZN N/A GO:0001172 ... P27999 39424994
    870855 8ram:J (2.8) BS01 ZN N/A GO:0001172 ... P22139 39424994
    870856 8ram:L (2.8) BS01 ZN N/A GO:0001172 ... P40422 39424994
    870857 8ram:M (2.8) BS01 ZN N/A GO:0000993 ... P36053 39424994
    870858 8ram:O (2.8) BS01 rna N/A GO:0001147 ... Q00416 39424994
    870859 8ram:Z (2.8) BS01 dna N/A GO:0000245 ... P27692 39424994
    870860 8ran:O (3.25) BS01 rna N/A GO:0001147 ... Q00416 39424994
    870861 8rao:O (4.4) BS01 rna N/A GO:0001147 ... Q00416 39424994
    870862 8rao:O (4.4) BS02 ADP N/A GO:0001147 ... Q00416 39424994
    870863 8rao:O (4.4) BS03 MG N/A GO:0001147 ... Q00416 39424994
    870864 8rao:O (4.4) BS04 BEF N/A GO:0001147 ... Q00416 39424994
    870865 8rap:A (4.3) BS01 dna N/A GO:0001172 ... P04050 39424994
    870866 8rap:A (4.3) BS02 rna N/A GO:0001172 ... P04050 39424994
    870867 8rap:A (4.3) BS03 dna N/A GO:0001172 ... P04050 39424994
    870868 8rap:A (4.3) BS04 ZN N/A GO:0001172 ... P04050 39424994
    870869 8rap:A (4.3) BS05 MG N/A GO:0001172 ... P04050 39424994
    870870 8rap:B (4.3) BS01 dna N/A GO:0001172 ... P08518 39424994
    870871 8rap:B (4.3) BS02 rna N/A GO:0001172 ... P08518 39424994
    870872 8rap:B (4.3) BS03 dna N/A GO:0001172 ... P08518 39424994
    870873 8rap:B (4.3) BS04 ZN N/A GO:0001172 ... P08518 39424994
    870874 8rap:C (4.3) BS01 ZN N/A GO:0000428 ... P16370 39424994
    870875 8rap:I (4.3) BS01 ZN N/A GO:0001172 ... P27999 39424994
    870876 8rap:J (4.3) BS01 ZN N/A GO:0001172 ... P22139 39424994
    870877 8rap:L (4.3) BS01 ZN N/A GO:0001172 ... P40422 39424994
    870878 8rap:M (4.3) BS01 ZN N/A GO:0000993 ... P36053 39424994
    870879 8rap:O (4.3) BS01 rna N/A GO:0001147 ... Q00416 39424994
    870880 8rap:O (4.3) BS02 ADP N/A GO:0001147 ... Q00416 39424994
    870881 8rap:O (4.3) BS03 MG N/A GO:0001147 ... Q00416 39424994
    870882 8rap:O (4.3) BS04 BEF N/A GO:0001147 ... Q00416 39424994
    870883 8rap:Z (4.3) BS01 dna N/A GO:0000245 ... P27692 39424994
    870884 8rap:Z (4.3) BS02 dna N/A GO:0000245 ... P27692 39424994
    870885 8raq:A (1.4) BS01 SAM N/A GO:0005515 ... P9WPB1 40411373
    870886 8raq:A0A0 (1.4) BS01 SAM N/A GO:0005515 ... P9WPB1 40411373
    870887 8rar:A (1.15) BS01 ZN N/A GO:0004064 ... P00918 38856178
    870888 8rar:A (1.15) BS02 YNF N/A GO:0004064 ... P00918 38856178
    870889 8ras:C (2.62) BS01 dna 2.7.7.6 GO:0003677 ... P46818 38428394
    870890 8ras:C (2.62) BS02 dna 2.7.7.6 GO:0003677 ... P46818 38428394
    870891 8ras:C (2.62) BS03 rna 2.7.7.6 GO:0003677 ... P46818 38428394
    870892 8ras:D (2.62) BS01 dna 2.7.7.6 GO:0000287 ... A0A6C0M5W0 38428394
    870893 8ras:D (2.62) BS02 dna 2.7.7.6 GO:0000287 ... A0A6C0M5W0 38428394
    870894 8ras:D (2.62) BS03 MG 2.7.7.6 GO:0000287 ... A0A6C0M5W0 38428394
    870895 8ras:E (2.62) BS01 dna 2.7.7.6 GO:0003677 ... A0A6C0M829 38428394
    870896 8ras:E (2.62) BS02 ZN 2.7.7.6 GO:0003677 ... A0A6C0M829 38428394
    870897 8ras:F (2.62) BS01 dna N/A N/A N/A 38428394
    870898 8ras:F (2.62) BS02 dna N/A N/A N/A 38428394
    870899 8ras:I (2.62) BS01 FE N/A GO:0004784 ... N/A 38428394
    870900 8ras:L (2.62) BS01 SAH N/A N/A N/A 38428394
    870901 8ras:N (2.62) BS01 FE N/A GO:0004784 ... N/A 38428394
    870902 8rau:A (2.33) BS01 dna N/A GO:0000287 ... P43246 N/A
    870903 8rau:A (2.33) BS02 dna N/A GO:0000287 ... P43246 N/A
    870904 8rau:A (2.33) BS03 ADP N/A GO:0000287 ... P43246 N/A
    870905 8rau:B (2.33) BS01 dna N/A GO:0005524 ... P20585 N/A
    870906 8rau:B (2.33) BS02 dna N/A GO:0005524 ... P20585 N/A
    870907 8rau:B (2.33) BS03 ADP N/A GO:0005524 ... P20585 N/A
    870908 8rav:A (2.63) BS01 dna N/A GO:0000287 ... P43246 N/A
    870909 8rav:A (2.63) BS02 dna N/A GO:0000287 ... P43246 N/A
    870910 8rav:A (2.63) BS03 ADP N/A GO:0000287 ... P43246 N/A
    870911 8rav:B (2.63) BS01 dna N/A GO:0005524 ... P20585 N/A
    870912 8rav:B (2.63) BS02 dna N/A GO:0005524 ... P20585 N/A
    870913 8raw:A (2.69) BS01 dna N/A GO:0000287 ... P43246 N/A
    870914 8raw:A (2.69) BS02 dna N/A GO:0000287 ... P43246 N/A
    870915 8raw:A (2.69) BS03 ADP N/A GO:0000287 ... P43246 N/A
    870916 8raw:B (2.69) BS01 dna N/A GO:0005524 ... P20585 N/A
    870917 8raw:B (2.69) BS02 dna N/A GO:0005524 ... P20585 N/A
    870918 8rax:A (3.162) BS01 dna N/A GO:0000287 ... P43246 N/A
    870919 8rax:B (3.162) BS01 dna N/A GO:0005524 ... P20585 N/A
    870920 8rax:B (3.162) BS02 dna N/A GO:0005524 ... P20585 N/A
    870921 8ray:A (1.58) BS01 ATP N/A GO:0005737 ... Q1CVJ3 40998818
    870922 8ray:A (1.58) BS02 ATP N/A GO:0005737 ... Q1CVJ3 40998818
    870923 8ray:B (1.58) BS01 ATP N/A GO:0005737 ... Q1CVJ3 40998818
    870924 8ray:B (1.58) BS02 ATP N/A GO:0005737 ... Q1CVJ3 40998818
    870925 8raz:A (2.843) BS01 dna N/A GO:0000287 ... P43246 N/A
    870926 8raz:A (2.843) BS02 dna N/A GO:0000287 ... P43246 N/A
    870927 8raz:A (2.843) BS03 ADP N/A GO:0000287 ... P43246 N/A
    870928 8raz:B (2.843) BS01 dna N/A GO:0003690 ... P20585 N/A
    870929 8raz:B (2.843) BS02 dna N/A GO:0003690 ... P20585 N/A
    870930 8raz:B (2.843) BS03 ADP N/A GO:0003690 ... P20585 N/A
    870931 8rb0:A (2.67) BS01 dna N/A GO:0000287 ... P43246 N/A
    870932 8rb0:A (2.67) BS02 dna N/A GO:0000287 ... P43246 N/A
    870933 8rb0:A (2.67) BS03 ADP N/A GO:0000287 ... P43246 N/A
    870934 8rb0:B (2.67) BS01 dna N/A GO:0005524 ... P20585 N/A
    870935 8rb0:B (2.67) BS02 dna N/A GO:0005524 ... P20585 N/A
    870936 8rb1:A (2.085) BS01 dna N/A GO:0000287 ... P43246 N/A
    870937 8rb1:A (2.085) BS02 dna N/A GO:0000287 ... P43246 N/A
    870938 8rb1:A (2.085) BS03 ADP N/A GO:0000287 ... P43246 N/A
    870939 8rb1:B (2.085) BS01 dna N/A GO:0005524 ... P20585 N/A
    870940 8rb1:B (2.085) BS02 dna N/A GO:0005524 ... P20585 N/A
    870941 8rb1:B (2.085) BS03 ADP N/A GO:0005524 ... P20585 N/A
    870942 8rb2:A (2.526) BS01 dna N/A GO:0000287 ... P43246 N/A
    870943 8rb2:A (2.526) BS02 dna N/A GO:0000287 ... P43246 N/A
    870944 8rb2:A (2.526) BS03 ADP N/A GO:0000287 ... P43246 N/A
    870945 8rb2:B (2.526) BS01 dna N/A GO:0003690 ... P20585 N/A
    870946 8rb2:B (2.526) BS02 dna N/A GO:0003690 ... P20585 N/A
    870947 8rb2:E (2.526) BS01 dna N/A GO:0000287 ... P43246 N/A
    870948 8rb2:E (2.526) BS02 dna N/A GO:0000287 ... P43246 N/A
    870949 8rb2:E (2.526) BS03 dna N/A GO:0000287 ... P43246 N/A
    870950 8rb2:E (2.526) BS04 dna N/A GO:0000287 ... P43246 N/A
    870951 8rb2:E (2.526) BS05 ADP N/A GO:0000287 ... P43246 N/A
    870952 8rb2:F (2.526) BS01 dna N/A GO:0003690 ... P20585 N/A
    870953 8rb2:F (2.526) BS02 dna N/A GO:0003690 ... P20585 N/A
    870954 8rb6:A (2.0) BS01 NAP 1.1.1.-
    1.1.1.188
    1.1.1.210
    1.1.1.239
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.1.1.64
    GO:0001523 ... P42330 38364714
    870955 8rb6:A (2.0) BS02 YMC 1.1.1.-
    1.1.1.188
    1.1.1.210
    1.1.1.239
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.1.1.64
    GO:0001523 ... P42330 38364714
    870956 8rb6:B (2.0) BS01 NAP 1.1.1.-
    1.1.1.188
    1.1.1.210
    1.1.1.239
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.1.1.64
    GO:0001523 ... P42330 38364714
    870957 8rb6:B (2.0) BS02 YMC 1.1.1.-
    1.1.1.188
    1.1.1.210
    1.1.1.239
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.1.1.64
    GO:0001523 ... P42330 38364714
    870958 8rb8:A (3.41) BS01 FES N/A GO:0005886 ... C1DMA8 38890433
    870959 8rb8:B (3.41) BS01 SF4 N/A GO:0005886 ... C1DMA7 38890433
    870960 8rb8:B (3.41) BS02 SF4 N/A GO:0005886 ... C1DMA7 38890433
    870961 8rb8:C (3.41) BS01 FMN N/A GO:0005886 ... C1DMA6 38890433
    870962 8rb8:C (3.41) BS02 SF4 N/A GO:0005886 ... C1DMA6 38890433
    870963 8rb8:C (3.41) BS03 SF4 N/A GO:0005886 ... C1DMA6 38890433
    870964 8rb8:D (3.41) BS01 RBF N/A GO:0005886 ... C1DMA5 38890433
    870965 8rb8:D (3.41) BS02 FMN N/A GO:0005886 ... C1DMA5 38890433
    870966 8rb8:E (3.41) BS01 FES N/A GO:0005886 ... Q9F5Y1 38890433
    870967 8rb8:G (3.41) BS01 FMN N/A GO:0005886 ... C1DMA4 38890433
    870968 8rb9:A (3.19) BS01 FES N/A GO:0005886 ... C1DMA8 38890433
    870969 8rb9:B (3.19) BS01 SF4 N/A GO:0005886 ... C1DMA7 38890433
    870970 8rb9:B (3.19) BS02 SF4 N/A GO:0005886 ... C1DMA7 38890433
    870971 8rb9:C (3.19) BS01 FMN N/A GO:0005886 ... C1DMA6 38890433
    870972 8rb9:C (3.19) BS02 SF4 N/A GO:0005886 ... C1DMA6 38890433
    870973 8rb9:C (3.19) BS03 SF4 N/A GO:0005886 ... C1DMA6 38890433
    870974 8rb9:D (3.19) BS01 RBF N/A GO:0005886 ... C1DMA5 38890433
    870975 8rb9:D (3.19) BS02 FMN N/A GO:0005886 ... C1DMA5 38890433
    870976 8rb9:E (3.19) BS01 FES N/A GO:0005886 ... Q9F5Y1 38890433
    870977 8rb9:G (3.19) BS01 FMN N/A GO:0005886 ... C1DMA4 38890433
    870978 8rba:A (1.57) BS01 YLW N/A GO:0000976 ... P04637 39698266
    870979 8rba:A (1.57) BS02 ZN N/A GO:0000976 ... P04637 39698266
    870980 8rba:B (1.57) BS01 YLW N/A GO:0000976 ... P04637 39698266
    870981 8rba:B (1.57) BS02 ZN N/A GO:0000976 ... P04637 39698266
    870982 8rbb:A (1.69) BS01 YLW N/A GO:0000976 ... P04637 39698266
    870983 8rbb:A (1.69) BS02 YLW N/A GO:0000976 ... P04637 39698266
    870984 8rbb:A (1.69) BS03 YLW N/A GO:0000976 ... P04637 39698266
    870985 8rbb:A (1.69) BS04 YLW N/A GO:0000976 ... P04637 39698266
    870986 8rbb:A (1.69) BS05 ZN N/A GO:0000976 ... P04637 39698266
    870987 8rbb:B (1.69) BS01 YLW N/A GO:0000976 ... P04637 39698266
    870988 8rbb:B (1.69) BS02 YLW N/A GO:0000976 ... P04637 39698266
    870989 8rbb:B (1.69) BS03 YLW N/A GO:0000976 ... P04637 39698266
    870990 8rbb:B (1.69) BS04 YLW N/A GO:0000976 ... P04637 39698266
    870991 8rbb:B (1.69) BS05 ZN N/A GO:0000976 ... P04637 39698266
    870992 8rbc:A (2.06) BS01 YM0 N/A GO:0000976 ... P04637 39698266
    870993 8rbc:A (2.06) BS02 ZN N/A GO:0000976 ... P04637 39698266
    870994 8rbc:B (2.06) BS01 YM0 N/A GO:0000976 ... P04637 39698266
    870995 8rbc:B (2.06) BS02 ZN N/A GO:0000976 ... P04637 39698266
    870996 8rbd:A (1.5) BS01 SFG N/A GO:0005515 ... P9WPB1 40411373
    870997 8rbd:A0A0 (1.5) BS01 SFG N/A GO:0005515 ... P9WPB1 40411373
    870998 8rbf:A (4.2) BS01 ADP N/A GO:0003774 ... Q99104 40205053
    870999 8rbf:B (4.2) BS01 ADP N/A GO:0000287 ... P68135 40205053
    871000 8rbf:C (4.2) BS01 ADP N/A GO:0000287 ... P68135 40205053

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).