SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    871001 8rbf:D (4.2) BS01 ADP N/A GO:0000287 ... P68135 40205053
    871002 8rbg:A (4.9) BS01 PO4 N/A GO:0003774 ... Q99104 40205053
    871003 8rbg:A (4.9) BS02 MG N/A GO:0003774 ... Q99104 40205053
    871004 8rbg:A (4.9) BS03 ADP N/A GO:0003774 ... Q99104 40205053
    871005 8rbh:A (1.88) BS01 peptide N/A N/A Q53G59 N/A
    871006 8rbh:B (1.88) BS01 peptide N/A N/A Q53G59 N/A
    871007 8rbj:A (2.37) BS01 rna N/A N/A G0S6G2 40563009
    871008 8rbj:A (2.37) BS02 AMP N/A N/A G0S6G2 40563009
    871009 8rbk:A (3.6) BS01 SAH N/A GO:0005634 ... A5PJT3 N/A
    871010 8rbl:A (1.55) BS01 SAH N/A GO:0005515 ... P9WPB1 40411373
    871011 8rbl:B (1.55) BS01 SAH N/A GO:0005515 ... P9WPB1 40411373
    871012 8rbm:A (3.24) BS01 peptide N/A GO:0005886 ... C1DMA8 38890433
    871013 8rbm:A (3.24) BS02 FES N/A GO:0005886 ... C1DMA8 38890433
    871014 8rbm:C (3.24) BS01 peptide N/A GO:0005886 ... C1DMA6 38890433
    871015 8rbm:C (3.24) BS02 FMN N/A GO:0005886 ... C1DMA6 38890433
    871016 8rbm:C (3.24) BS03 SF4 N/A GO:0005886 ... C1DMA6 38890433
    871017 8rbm:C (3.24) BS04 SF4 N/A GO:0005886 ... C1DMA6 38890433
    871018 8rbm:D (3.24) BS01 RBF N/A GO:0005886 ... C1DMA5 38890433
    871019 8rbm:D (3.24) BS02 FMN N/A GO:0005886 ... C1DMA5 38890433
    871020 8rbm:E (3.24) BS01 FES N/A GO:0005886 ... Q9F5Y1 38890433
    871021 8rbm:G (3.24) BS01 FMN N/A GO:0005886 ... C1DMA4 38890433
    871022 8rbn:A () BS01 BEM ? N/A N/A N/A
    871023 8rbn:A () BS02 MAW ? N/A N/A N/A
    871024 8rbn:A () BS03 BEM ? N/A N/A N/A
    871025 8rbn:A () BS04 MAV ? N/A N/A N/A
    871026 8rbn:A () BS05 BEM ? N/A N/A N/A
    871027 8rbo:A (3.02) BS01 ZN 2.7.7.6 GO:0000287 ... Q8U0M4 38709902
    871028 8rbo:A (3.02) BS02 ZN 2.7.7.6 GO:0000287 ... Q8U0M4 38709902
    871029 8rbo:A (3.02) BS03 MG 2.7.7.6 GO:0000287 ... Q8U0M4 38709902
    871030 8rbo:B (3.02) BS01 ZN 2.7.7.6 GO:0003677 ... Q8U0M3 38709902
    871031 8rbo:N (3.02) BS01 ZN 2.7.7.6 GO:0000428 ... P60292 38709902
    871032 8rbo:P (3.02) BS01 ZN 2.7.7.6 GO:0003677 ... Q8TZI3 38709902
    871033 8rbp:A (1.15) BS01 ZN N/A GO:0004064 ... P00918 38856178
    871034 8rbp:A (1.15) BS02 EA3 N/A GO:0004064 ... P00918 38856178
    871035 8rbq:A (3.32) BS01 FES N/A GO:0005886 ... C1DMA8 38890433
    871036 8rbq:B (3.32) BS01 SF4 N/A GO:0005886 ... C1DMA7 38890433
    871037 8rbq:B (3.32) BS02 SF4 N/A GO:0005886 ... C1DMA7 38890433
    871038 8rbq:C (3.32) BS01 FMN N/A GO:0005886 ... C1DMA6 38890433
    871039 8rbq:C (3.32) BS02 SF4 N/A GO:0005886 ... C1DMA6 38890433
    871040 8rbq:C (3.32) BS03 SF4 N/A GO:0005886 ... C1DMA6 38890433
    871041 8rbq:D (3.32) BS01 RBF N/A GO:0005886 ... C1DMA5 38890433
    871042 8rbq:E (3.32) BS01 FES N/A GO:0005886 ... Q9F5Y1 38890433
    871043 8rbq:G (3.32) BS01 FMN N/A GO:0005886 ... C1DMA4 38890433
    871044 8rbu:A (2.7) BS01 peptide ? GO:0006955 ... Q5S3G3 38742159
    871045 8rbv:A (1.8) BS01 peptide ? GO:0006955 ... Q53Z42 38742159
    871046 8rbx:A (4.1) BS01 rna 2.7.7.6 GO:0001172 ... A0A8D1DPV6 38570683
    871047 8rbx:A (4.1) BS02 dna 2.7.7.6 GO:0001172 ... A0A8D1DPV6 38570683
    871048 8rbx:A (4.1) BS03 ZN 2.7.7.6 GO:0001172 ... A0A8D1DPV6 38570683
    871049 8rbx:A (4.1) BS04 ZN 2.7.7.6 GO:0001172 ... A0A8D1DPV6 38570683
    871050 8rbx:B (4.1) BS01 rna 2.7.7.6 GO:0003677 ... Q9H0H0 38570683
    871051 8rbx:B (4.1) BS02 dna 2.7.7.6 GO:0003677 ... Q9H0H0 38570683
    871052 8rbx:B (4.1) BS03 ZN 2.7.7.6 GO:0003677 ... Q9H0H0 38570683
    871053 8rbx:C (4.1) BS01 ZN ? GO:0003677 ... I3LCH3 38570683
    871054 8rbx:E (4.1) BS01 dna ? GO:0003677 ... I3LSI7 38570683
    871055 8rbx:I (4.1) BS01 ZN ? GO:0001193 ... P60899 38570683
    871056 8rbx:I (4.1) BS02 ZN ? GO:0001193 ... P60899 38570683
    871057 8rbx:J (4.1) BS01 ZN ? GO:0003677 ... A0A4X1VYD0 38570683
    871058 8rbx:L (4.1) BS01 ZN ? GO:0001650 ... A0A8D0JYF1 38570683
    871059 8rbx:M (4.1) BS01 dna ? GO:0000776 ... Q6NXT2 38570683
    871060 8rbx:M (4.1) BS02 dna ? GO:0000776 ... Q6NXT2 38570683
    871061 8rbx:O (4.1) BS01 dna ? GO:0000781 ... P62805 38570683
    871062 8rbx:O (4.1) BS02 dna ? GO:0000781 ... P62805 38570683
    871063 8rbx:Q (4.1) BS01 dna ? GO:0000786 ... P0C0S8 38570683
    871064 8rbx:Q (4.1) BS02 dna ? GO:0000786 ... P0C0S8 38570683
    871065 8rbx:R (4.1) BS01 dna ? GO:0000786 ... P06899 38570683
    871066 8rbx:S (4.1) BS01 dna ? GO:0000776 ... Q6NXT2 38570683
    871067 8rbx:S (4.1) BS02 dna ? GO:0000776 ... Q6NXT2 38570683
    871068 8rbx:U (4.1) BS01 dna ? GO:0000781 ... P62805 38570683
    871069 8rbx:U (4.1) BS02 dna ? GO:0000781 ... P62805 38570683
    871070 8rbx:V (4.1) BS01 dna ? GO:0000786 ... P0C0S8 38570683
    871071 8rbx:V (4.1) BS02 dna ? GO:0000786 ... P0C0S8 38570683
    871072 8rbx:W (4.1) BS01 dna ? GO:0000786 ... P06899 38570683
    871073 8rbx:W (4.1) BS02 dna ? GO:0000786 ... P06899 38570683
    871074 8rbx:Z (4.1) BS01 rna ? GO:0000122 ... O00267 38570683
    871075 8rbx:b (4.1) BS01 peptide ? GO:0005515 ... Q9H0H0 38570683
    871076 8rbx:b (4.1) BS02 peptide ? GO:0005515 ... Q9H0H0 38570683
    871077 8rbx:f (4.1) BS01 peptide ? GO:0000785 ... Q9UL03 38570683
    871078 8rbx:f (4.1) BS02 MN ? GO:0000785 ... Q9UL03 38570683
    871079 8rbx:g (4.1) BS01 peptide ? GO:0000077 ... Q9NVH2 38570683
    871080 8rbx:g (4.1) BS02 peptide ? GO:0000077 ... Q9NVH2 38570683
    871081 8rbx:k (4.1) BS01 ZN 3.1.27.- GO:0004521 ... Q5TA45 38570683
    871082 8rbx:k (4.1) BS02 ZN 3.1.27.- GO:0004521 ... Q5TA45 38570683
    871083 8rbx:q (4.1) BS01 MN 3.1.3.16 GO:0000159 ... P67775 38570683
    871084 8rbx:v (4.1) BS01 peptide ? GO:0005515 ... Q8WX92 38570683
    871085 8rbz:b (3.7) BS01 peptide ? GO:0005515 ... Q9H0H0 38570683
    871086 8rbz:c (3.7) BS01 peptide ? GO:0000724 ... Q68E01 38570683
    871087 8rbz:f (3.7) BS01 peptide ? GO:0000785 ... Q9UL03 38570683
    871088 8rbz:g (3.7) BS01 peptide ? GO:0000077 ... Q9NVH2 38570683
    871089 8rbz:g (3.7) BS02 peptide ? GO:0000077 ... Q9NVH2 38570683
    871090 8rbz:k (3.7) BS01 ZN 3.1.27.- GO:0004521 ... Q5TA45 38570683
    871091 8rbz:k (3.7) BS02 ZN 3.1.27.- GO:0004521 ... Q5TA45 38570683
    871092 8rbz:q (3.7) BS01 MN 3.1.3.16 GO:0000159 ... P67775 38570683
    871093 8rbz:q (3.7) BS02 MN 3.1.3.16 GO:0000159 ... P67775 38570683
    871094 8rc0:A (3.2) BS01 rna ? GO:0000244 ... Q6P2Q9 38467877
    871095 8rc0:C (3.2) BS01 GTP ? GO:0000244 ... Q15029 38467877
    871096 8rc0:E (3.2) BS01 rna ? GO:0000244 ... O94906 38467877
    871097 8rc0:h (3.2) BS01 rna ? GO:0000244 ... P14678 38467877
    871098 8rc0:i (3.2) BS01 rna ? GO:0000243 ... P62314 38467877
    871099 8rc0:j (3.2) BS01 rna ? GO:0000244 ... P62316 38467877
    871100 8rc0:m (3.2) BS01 rna ? GO:0000244 ... P62306 38467877
    871101 8rc0:n (3.2) BS01 rna ? GO:0000244 ... P62308 38467877
    871102 8rc1:A (3.7) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38431715
    871103 8rc1:B (3.7) BS01 GDP ? GO:0000226 ... P02554 38431715
    871104 8rc1:C (3.7) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38431715
    871105 8rc1:D (3.7) BS01 GDP ? GO:0000226 ... P02554 38431715
    871106 8rc2:A (3.1) BS01 rna N/A N/A A0A333ESG5 39468082
    871107 8rc2:A (3.1) BS02 dna N/A N/A A0A333ESG5 39468082
    871108 8rc2:A (3.1) BS03 dna N/A N/A A0A333ESG5 39468082
    871109 8rc2:B (3.1) BS01 rna N/A N/A A0A333ESG5 39468082
    871110 8rc2:B (3.1) BS02 dna N/A N/A A0A333ESG5 39468082
    871111 8rc2:C (3.1) BS01 rna N/A N/A A0A333ESG5 39468082
    871112 8rc2:C (3.1) BS02 dna N/A N/A A0A333ESG5 39468082
    871113 8rc2:D (3.1) BS01 rna N/A N/A A0A333ESG5 39468082
    871114 8rc2:D (3.1) BS02 dna N/A N/A A0A333ESG5 39468082
    871115 8rc2:E (3.1) BS01 rna N/A N/A A0A333ESG5 39468082
    871116 8rc2:E (3.1) BS02 dna N/A N/A A0A333ESG5 39468082
    871117 8rc2:F (3.1) BS01 rna N/A N/A N/A 39468082
    871118 8rc2:F (3.1) BS02 dna N/A N/A N/A 39468082
    871119 8rc2:F (3.1) BS03 dna N/A N/A N/A 39468082
    871120 8rc2:G (3.1) BS01 dna N/A N/A A0A7Z7WW72 39468082
    871121 8rc2:G (3.1) BS02 dna N/A N/A A0A7Z7WW72 39468082
    871122 8rc2:G (3.1) BS03 ZN N/A N/A A0A7Z7WW72 39468082
    871123 8rc2:L (3.1) BS01 rna N/A N/A A0A333ESG5 39468082
    871124 8rc3:A (3.0) BS01 rna N/A N/A A0A379PIR9 39468082
    871125 8rc3:A (3.0) BS02 dna N/A N/A A0A379PIR9 39468082
    871126 8rc3:B (3.0) BS01 rna N/A N/A A0A379PIR9 39468082
    871127 8rc3:B (3.0) BS02 dna N/A N/A A0A379PIR9 39468082
    871128 8rc3:C (3.0) BS01 rna N/A N/A A0A379PIR9 39468082
    871129 8rc3:C (3.0) BS02 dna N/A N/A A0A379PIR9 39468082
    871130 8rc3:D (3.0) BS01 rna N/A N/A A0A379PIR9 39468082
    871131 8rc3:D (3.0) BS02 dna N/A N/A A0A379PIR9 39468082
    871132 8rc3:E (3.0) BS01 rna N/A N/A A0A379PIR9 39468082
    871133 8rc3:E (3.0) BS02 dna N/A N/A A0A379PIR9 39468082
    871134 8rc3:F (3.0) BS01 rna N/A N/A A0A379PL53 39468082
    871135 8rc3:F (3.0) BS02 dna N/A N/A A0A379PL53 39468082
    871136 8rc3:F (3.0) BS03 dna N/A N/A A0A379PL53 39468082
    871137 8rc3:G (3.0) BS01 dna N/A N/A A0A379PIR4 39468082
    871138 8rc3:G (3.0) BS02 dna N/A N/A A0A379PIR4 39468082
    871139 8rc3:G (3.0) BS03 ZN N/A N/A A0A379PIR4 39468082
    871140 8rc3:M (3.0) BS01 rna N/A N/A A0A379PNK2 39468082
    871141 8rc3:M (3.0) BS02 dna N/A N/A A0A379PNK2 39468082
    871142 8rc4:k (3.1) BS01 ZN 3.1.27.- GO:0004521 ... Q5TA45 38570683
    871143 8rc4:k (3.1) BS02 ZN 3.1.27.- GO:0004521 ... Q5TA45 38570683
    871144 8rc4:q (3.1) BS01 MN 3.1.3.16 GO:0000159 ... P67775 38570683
    871145 8rc4:q (3.1) BS02 MN 3.1.3.16 GO:0000159 ... P67775 38570683
    871146 8rc5:1A (3.35) BS01 AGS N/A N/A Q4ZAS5 39987160
    871147 8rc5:1B (3.35) BS01 AGS N/A N/A Q4ZAS5 39987160
    871148 8rc5:1B (3.35) BS02 AGS N/A N/A Q4ZAS5 39987160
    871149 8rc5:1C (3.35) BS01 AGS N/A N/A Q4ZAS5 39987160
    871150 8rc5:1C (3.35) BS02 AGS N/A N/A Q4ZAS5 39987160
    871151 8rc5:1D (3.35) BS01 AGS N/A N/A Q4ZAS5 39987160
    871152 8rc5:1D (3.35) BS02 AGS N/A N/A Q4ZAS5 39987160
    871153 8rc5:1E (3.35) BS01 AGS N/A N/A Q4ZAS5 39987160
    871154 8rc5:1E (3.35) BS02 AGS N/A N/A Q4ZAS5 39987160
    871155 8rc5:1F (3.35) BS01 AGS N/A N/A Q4ZAS5 39987160
    871156 8rc5:1F (3.35) BS02 AGS N/A N/A Q4ZAS5 39987160
    871157 8rc5:1G (3.35) BS01 AGS N/A N/A Q4ZAS5 39987160
    871158 8rc5:1G (3.35) BS02 AGS N/A N/A Q4ZAS5 39987160
    871159 8rc5:1H (3.35) BS01 AGS N/A N/A Q4ZAS5 39987160
    871160 8rc5:1H (3.35) BS02 AGS N/A N/A Q4ZAS5 39987160
    871161 8rc5:1I (3.35) BS01 AGS N/A N/A Q4ZAS5 39987160
    871162 8rc5:4A (3.35) BS01 AGS N/A N/A Q4ZAS5 39987160
    871163 8rc5:4B (3.35) BS01 AGS N/A N/A Q4ZAS5 39987160
    871164 8rc5:4B (3.35) BS02 AGS N/A N/A Q4ZAS5 39987160
    871165 8rc5:4C (3.35) BS01 AGS N/A N/A Q4ZAS5 39987160
    871166 8rc5:4C (3.35) BS02 AGS N/A N/A Q4ZAS5 39987160
    871167 8rc5:4D (3.35) BS01 AGS N/A N/A Q4ZAS5 39987160
    871168 8rc5:4D (3.35) BS02 AGS N/A N/A Q4ZAS5 39987160
    871169 8rc5:4E (3.35) BS01 AGS N/A N/A Q4ZAS5 39987160
    871170 8rc5:4E (3.35) BS02 AGS N/A N/A Q4ZAS5 39987160
    871171 8rc5:4F (3.35) BS01 AGS N/A N/A Q4ZAS5 39987160
    871172 8rc5:4F (3.35) BS02 AGS N/A N/A Q4ZAS5 39987160
    871173 8rc5:4G (3.35) BS01 AGS N/A N/A Q4ZAS5 39987160
    871174 8rc5:4G (3.35) BS02 AGS N/A N/A Q4ZAS5 39987160
    871175 8rc5:4H (3.35) BS01 AGS N/A N/A Q4ZAS5 39987160
    871176 8rc5:4H (3.35) BS02 AGS N/A N/A Q4ZAS5 39987160
    871177 8rc5:4I (3.35) BS01 AGS N/A N/A Q4ZAS5 39987160
    871178 8rc8:A (2.005) BS01 MGD N/A GO:0005515 ... Q72EJ1 39148770
    871179 8rc8:A (2.005) BS02 MGD N/A GO:0005515 ... Q72EJ1 39148770
    871180 8rc8:A (2.005) BS03 SF4 N/A GO:0005515 ... Q72EJ1 39148770
    871181 8rc8:B (2.005) BS01 SF4 N/A GO:0030313 ... Q72EJ0 39148770
    871182 8rc8:B (2.005) BS02 SF4 N/A GO:0030313 ... Q72EJ0 39148770
    871183 8rc8:B (2.005) BS03 SF4 N/A GO:0030313 ... Q72EJ0 39148770
    871184 8rc9:A (2.06) BS01 MGD N/A GO:0005515 ... Q72EJ1 39148770
    871185 8rc9:A (2.06) BS02 MGD N/A GO:0005515 ... Q72EJ1 39148770
    871186 8rc9:A (2.06) BS03 SF4 N/A GO:0005515 ... Q72EJ1 39148770
    871187 8rc9:A (2.06) BS04 OXY N/A GO:0005515 ... Q72EJ1 39148770
    871188 8rc9:B (2.06) BS01 SF4 N/A GO:0030313 ... Q72EJ0 39148770
    871189 8rc9:B (2.06) BS02 SF4 N/A GO:0030313 ... Q72EJ0 39148770
    871190 8rc9:B (2.06) BS03 SF4 N/A GO:0030313 ... Q72EJ0 39148770
    871191 8rca:A (1.664) BS01 MGD N/A GO:0005515 ... Q72EJ1 39148770
    871192 8rca:A (1.664) BS02 MGD N/A GO:0005515 ... Q72EJ1 39148770
    871193 8rca:A (1.664) BS03 SF4 N/A GO:0005515 ... Q72EJ1 39148770
    871194 8rca:B (1.664) BS01 SF4 N/A N/A N/A 39148770
    871195 8rca:B (1.664) BS02 SF4 N/A N/A N/A 39148770
    871196 8rca:B (1.664) BS03 SF4 N/A N/A N/A 39148770
    871197 8rcb:A (2.11) BS01 MGD N/A GO:0005515 ... Q72EJ1 39148770
    871198 8rcb:A (2.11) BS02 MGD N/A GO:0005515 ... Q72EJ1 39148770
    871199 8rcb:A (2.11) BS03 SF4 N/A GO:0005515 ... Q72EJ1 39148770
    871200 8rcb:A (2.11) BS04 OXY N/A GO:0005515 ... Q72EJ1 39148770

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).