SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    871001 8s3e:A (2.39) BS05 MG ? GO:0005216 ... Q9BG98 38553946
    871002 8s3e:B (2.39) BS01 MG ? GO:0005216 ... Q9BG98 38553946
    871003 8s3e:B (2.39) BS02 CLR ? GO:0005216 ... Q9BG98 38553946
    871004 8s3e:B (2.39) BS03 CLR ? GO:0005216 ... Q9BG98 38553946
    871005 8s3e:B (2.39) BS04 CA ? GO:0005216 ... Q9BG98 38553946
    871006 8s3e:B (2.39) BS05 CA ? GO:0005216 ... Q9BG98 38553946
    871007 8s3e:C (2.39) BS01 MG ? GO:0005216 ... Q9BG98 38553946
    871008 8s3e:C (2.39) BS02 CLR ? GO:0005216 ... Q9BG98 38553946
    871009 8s3e:C (2.39) BS03 CLR ? GO:0005216 ... Q9BG98 38553946
    871010 8s3e:C (2.39) BS04 CA ? GO:0005216 ... Q9BG98 38553946
    871011 8s3e:C (2.39) BS05 CA ? GO:0005216 ... Q9BG98 38553946
    871012 8s3e:D (2.39) BS01 MG ? GO:0005216 ... Q9BG98 38553946
    871013 8s3e:D (2.39) BS02 CLR ? GO:0005216 ... Q9BG98 38553946
    871014 8s3e:D (2.39) BS03 CLR ? GO:0005216 ... Q9BG98 38553946
    871015 8s3e:D (2.39) BS04 CA ? GO:0005216 ... Q9BG98 38553946
    871016 8s3e:D (2.39) BS05 CA ? GO:0005216 ... Q9BG98 38553946
    871017 8s3r:A (2.28) BS01 A1H48 N/A GO:0001779 ... O00329 38907711
    871018 8s3x:A (2.59) BS01 A1H41 2.7.11.1 GO:0004672 ... P53671 38669909
    871019 8s3x:B (2.59) BS01 A1H41 2.7.11.1 GO:0004672 ... P53671 38669909
    871020 8s3x:C (2.59) BS01 A1H41 2.7.11.1 GO:0004672 ... P53671 38669909
    871021 8s3x:D (2.59) BS01 A1H41 2.7.11.1 GO:0004672 ... P53671 38669909
    871022 8s45:B (1.69) BS01 G3Y N/A GO:0004016 ... Q8Y5E4 N/A
    871023 8s46:B (1.99) BS01 F06 N/A GO:0004016 ... Q8Y5E4 N/A
    871024 8s47:A (2.11) BS01 47U N/A GO:0004016 ... Q8Y5E4 N/A
    871025 8s47:B (2.11) BS01 47U N/A GO:0004016 ... Q8Y5E4 N/A
    871026 8s48:B (1.65) BS01 4AQ N/A GO:0004016 ... Q8Y5E4 N/A
    871027 8s49:B (1.7) BS01 45Y N/A GO:0004016 ... Q8Y5E4 N/A
    871028 8s4a:A (2.23) BS01 AJO N/A GO:0004016 ... Q8Y5E4 N/A
    871029 8s4a:B (2.23) BS01 AJO N/A GO:0004016 ... Q8Y5E4 N/A
    871030 8s4b:B (2.15) BS01 8G2 N/A GO:0004016 ... Q8Y5E4 N/A
    871031 8s4d:A (2.584) BS01 A1D5N N/A GO:0046872 ... P0ABE7
    P35414
    39730334
    871032 8s4f:A (1.39) BS01 ZN N/A GO:0004064 ... P00915 39688904
    871033 8s4f:A (1.39) BS02 VV8 N/A GO:0004064 ... P00915 39688904
    871034 8s4f:B (1.39) BS01 ZN N/A GO:0004064 ... P00915 39688904
    871035 8s4f:B (1.39) BS02 VV8 N/A GO:0004064 ... P00915 39688904
    871036 8s4g:C () BS01 ZN ? N/A N/A N/A
    871037 8s4g:C () BS02 ZN ? N/A N/A N/A
    871038 8s4g:C () BS03 ZN ? N/A N/A N/A
    871039 8s4g:K () BS01 peptide ? N/A N/A N/A
    871040 8s4g:N () BS01 ZN ? N/A N/A N/A
    871041 8s4g:Q () BS01 peptide ? N/A N/A N/A
    871042 8s4g:S () BS01 ZN ? N/A N/A N/A
    871043 8s4g:S () BS02 ZN ? N/A N/A N/A
    871044 8s4h:A (1.7) BS01 RBR N/A N/A N/A 39259810
    871045 8s4h:B (1.7) BS01 RBR N/A N/A N/A 39259810
    871046 8s4h:C (1.7) BS01 RBR N/A N/A N/A 39259810
    871047 8s4h:D (1.7) BS01 RBR N/A N/A N/A 39259810
    871048 8s4h:H (1.7) BS01 RBR N/A N/A N/A 39259810
    871049 8s4h:L (1.7) BS01 RBR N/A N/A N/A 39259810
    871050 8s4j:A (1.7) BS01 GLU N/A N/A A0A0H6LKE4 39556531
    871051 8s4k:H (1.6) BS01 RBR N/A N/A N/A 39259810
    871052 8s4k:L (1.6) BS01 RBR N/A N/A N/A 39259810
    871053 8s4m:A (2.1) BS01 HEM N/A N/A P9WPP1 39803573
    871054 8s4m:B (2.1) BS01 HEM N/A N/A P9WPP1 39803573
    871055 8s4m:C (2.1) BS01 HEM N/A N/A P9WPP1 39803573
    871056 8s4m:C (2.1) BS02 A1H47 N/A N/A P9WPP1 39803573
    871057 8s4t:A (2.67) BS01 dna ? N/A D1LHE9 38811160
    871058 8s4t:B (2.67) BS01 dna ? N/A D1LHE9 38811160
    871059 8s4t:C (2.67) BS01 dna ? N/A D1LHE9 38811160
    871060 8s4y:B (2.7) BS01 peptide N/A N/A P54939 N/A
    871061 8s51:A (3.1) BS01 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38604172
    871062 8s51:A (3.1) BS02 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38604172
    871063 8s51:A (3.1) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38604172
    871064 8s51:A (3.1) BS04 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38604172
    871065 8s51:A (3.1) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38604172
    871066 8s51:A (3.1) BS06 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38604172
    871067 8s51:B (3.1) BS01 rna 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    871068 8s51:B (3.1) BS02 dna 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    871069 8s51:B (3.1) BS03 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    871070 8s51:C (3.1) BS01 ZN ? GO:0000428 ... I3LCH3 38604172
    871071 8s51:E (3.1) BS01 dna ? GO:0001054 ... I3LSI7 38604172
    871072 8s51:I (3.1) BS01 ZN ? GO:0000428 ... P60899 38604172
    871073 8s51:I (3.1) BS02 ZN ? GO:0000428 ... P60899 38604172
    871074 8s51:J (3.1) BS01 ZN ? GO:0000428 ... A0A4X1VYD0 38604172
    871075 8s51:L (3.1) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38604172
    871076 8s51:M (3.1) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 38604172
    871077 8s51:M (3.1) BS02 rna 2.3.1.48 GO:0000776 ... Q00403 38604172
    871078 8s51:M (3.1) BS03 dna 2.3.1.48 GO:0000776 ... Q00403 38604172
    871079 8s51:M (3.1) BS04 ZN 2.3.1.48 GO:0000776 ... Q00403 38604172
    871080 8s51:O (3.1) BS01 dna ? GO:0000785 ... P20226 38604172
    871081 8s51:O (3.1) BS02 dna ? GO:0000785 ... P20226 38604172
    871082 8s51:R (3.1) BS01 dna 3.6.4.12 GO:0003677 ... P13984 38604172
    871083 8s51:R (3.1) BS02 dna 3.6.4.12 GO:0003677 ... P13984 38604172
    871084 8s51:U (3.1) BS01 dna ? GO:0000979 ... P52655 38604172
    871085 8s51:U (3.1) BS02 dna ? GO:0000979 ... P52655 38604172
    871086 8s51:W (3.1) BS01 ZN ? GO:0005515 ... P29083 38604172
    871087 8s52:A (2.9) BS01 dna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    871088 8s52:A (2.9) BS02 rna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    871089 8s52:A (2.9) BS03 dna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    871090 8s52:A (2.9) BS04 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    871091 8s52:A (2.9) BS05 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    871092 8s52:A (2.9) BS06 MG 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    871093 8s52:B (2.9) BS01 dna 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    871094 8s52:B (2.9) BS02 rna 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    871095 8s52:B (2.9) BS03 dna 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    871096 8s52:B (2.9) BS04 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    871097 8s52:C (2.9) BS01 ZN ? GO:0000428 ... I3LCH3 38604172
    871098 8s52:E (2.9) BS01 dna ? GO:0001054 ... I3LSI7 38604172
    871099 8s52:I (2.9) BS01 ZN ? GO:0000428 ... P60899 38604172
    871100 8s52:I (2.9) BS02 ZN ? GO:0000428 ... P60899 38604172
    871101 8s52:J (2.9) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38604172
    871102 8s52:L (2.9) BS01 ZN ? GO:0001054 ... A0A4X1TRS6 38604172
    871103 8s52:M (2.9) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 38604172
    871104 8s52:M (2.9) BS02 rna 2.3.1.48 GO:0000776 ... Q00403 38604172
    871105 8s52:M (2.9) BS03 dna 2.3.1.48 GO:0000776 ... Q00403 38604172
    871106 8s52:M (2.9) BS04 ZN 2.3.1.48 GO:0000776 ... Q00403 38604172
    871107 8s52:O (2.9) BS01 dna ? GO:0000785 ... P20226 38604172
    871108 8s52:O (2.9) BS02 dna ? GO:0000785 ... P20226 38604172
    871109 8s52:R (2.9) BS01 dna 3.6.4.12 GO:0003677 ... P13984 38604172
    871110 8s52:W (2.9) BS01 ZN ? GO:0005515 ... P29083 38604172
    871111 8s53:A (1.6) BS01 3QO N/A N/A P9WPL5 39803573
    871112 8s53:A (1.6) BS02 3QO N/A N/A P9WPL5 39803573
    871113 8s53:A (1.6) BS03 HEM N/A N/A P9WPL5 39803573
    871114 8s54:A (3.4) BS01 dna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    871115 8s54:A (3.4) BS02 rna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    871116 8s54:A (3.4) BS03 dna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    871117 8s54:A (3.4) BS04 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    871118 8s54:A (3.4) BS05 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    871119 8s54:A (3.4) BS06 MG 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    871120 8s54:B (3.4) BS01 rna 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    871121 8s54:B (3.4) BS02 dna 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    871122 8s54:B (3.4) BS03 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    871123 8s54:C (3.4) BS01 ZN ? GO:0000428 ... I3LCH3 38604172
    871124 8s54:E (3.4) BS01 dna ? GO:0001054 ... I3LSI7 38604172
    871125 8s54:I (3.4) BS01 ZN ? GO:0000428 ... P60899 38604172
    871126 8s54:I (3.4) BS02 ZN ? GO:0000428 ... P60899 38604172
    871127 8s54:J (3.4) BS01 ZN ? GO:0000428 ... A0A4X1VYD0 38604172
    871128 8s54:W (3.4) BS01 ZN ? GO:0005515 ... P29083 38604172
    871129 8s55:A (3.4) BS01 dna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    871130 8s55:A (3.4) BS02 rna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    871131 8s55:A (3.4) BS03 dna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    871132 8s55:A (3.4) BS04 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    871133 8s55:A (3.4) BS05 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    871134 8s55:A (3.4) BS06 MG 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    871135 8s55:B (3.4) BS01 rna 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    871136 8s55:B (3.4) BS02 dna 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    871137 8s55:B (3.4) BS03 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    871138 8s55:C (3.4) BS01 ZN ? GO:0000428 ... I3LCH3 38604172
    871139 8s55:I (3.4) BS01 ZN ? GO:0000428 ... P60899 38604172
    871140 8s55:I (3.4) BS02 ZN ? GO:0000428 ... P60899 38604172
    871141 8s55:J (3.4) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38604172
    871142 8s55:W (3.4) BS01 ZN ? GO:0005515 ... P29083 38604172
    871143 8s59:A (2.39) BS01 AKG N/A N/A Q8PY99 N/A
    871144 8s59:A (2.39) BS02 AKG N/A N/A Q8PY99 N/A
    871145 8s59:B (2.39) BS01 AKG N/A N/A Q8PY99 N/A
    871146 8s59:B (2.39) BS02 AKG N/A N/A Q8PY99 N/A
    871147 8s59:C (2.39) BS01 AKG N/A N/A Q8PY99 N/A
    871148 8s59:C (2.39) BS02 AKG N/A N/A Q8PY99 N/A
    871149 8s59:D (2.39) BS01 AKG N/A N/A Q8PY99 N/A
    871150 8s59:D (2.39) BS02 AKG N/A N/A Q8PY99 N/A
    871151 8s59:L (2.39) BS01 AKG N/A N/A Q8PY99 N/A
    871152 8s59:L (2.39) BS02 AKG N/A N/A Q8PY99 N/A
    871153 8s59:M (2.39) BS01 AKG N/A N/A Q8PY99 N/A
    871154 8s59:M (2.39) BS02 AKG N/A N/A Q8PY99 N/A
    871155 8s59:O (2.39) BS01 AKG N/A N/A Q8PY99 N/A
    871156 8s59:O (2.39) BS02 AKG N/A N/A Q8PY99 N/A
    871157 8s59:P (2.39) BS01 AKG N/A N/A Q8PY99 N/A
    871158 8s59:P (2.39) BS02 AKG N/A N/A Q8PY99 N/A
    871159 8s59:Q (2.39) BS01 AKG N/A N/A Q8PY99 N/A
    871160 8s59:Q (2.39) BS02 AKG N/A N/A Q8PY99 N/A
    871161 8s59:V (2.39) BS01 AKG N/A N/A Q8PY99 N/A
    871162 8s59:V (2.39) BS02 AKG N/A N/A Q8PY99 N/A
    871163 8s59:X (2.39) BS01 AKG N/A N/A Q8PY99 N/A
    871164 8s59:X (2.39) BS02 AKG N/A N/A Q8PY99 N/A
    871165 8s59:Y (2.39) BS01 AKG N/A N/A Q8PY99 N/A
    871166 8s59:Y (2.39) BS02 AKG N/A N/A Q8PY99 N/A
    871167 8s5b:A (1.8) BS01 A1H5E ? GO:0042597 ... A9CEY9 38567495
    871168 8s5c:A (3.1) BS01 MG N/A N/A P11076 N/A
    871169 8s5c:A (3.1) BS02 GSP N/A N/A P11076 N/A
    871170 8s5d:A (3.79) BS01 MG N/A N/A P11076 N/A
    871171 8s5d:A (3.79) BS02 GSP N/A N/A P11076 N/A
    871172 8s5e:A (3.1) BS01 MG N/A N/A P11076 N/A
    871173 8s5e:A (3.1) BS02 GSP N/A N/A P11076 N/A
    871174 8s5e:B (3.1) BS01 MG N/A N/A P11076 N/A
    871175 8s5e:B (3.1) BS02 GSP N/A N/A P11076 N/A
    871176 8s5e:C (3.1) BS01 MG N/A N/A P11076 N/A
    871177 8s5e:C (3.1) BS02 GSP N/A N/A P11076 N/A
    871178 8s5e:D (3.1) BS01 MG N/A N/A P11076 N/A
    871179 8s5e:D (3.1) BS02 GSP N/A N/A P11076 N/A
    871180 8s5e:E (3.1) BS01 MG N/A N/A P11076 N/A
    871181 8s5e:E (3.1) BS02 GSP N/A N/A P11076 N/A
    871182 8s5e:F (3.1) BS01 MG N/A N/A P11076 N/A
    871183 8s5e:F (3.1) BS02 GSP N/A N/A P11076 N/A
    871184 8s5e:G (3.1) BS01 MG N/A N/A P11076 N/A
    871185 8s5e:G (3.1) BS02 GSP N/A N/A P11076 N/A
    871186 8s5h:A (3.7) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    871187 8s5h:B (3.7) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    871188 8s5h:C (3.7) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    871189 8s5h:D (3.7) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    871190 8s5h:E (3.7) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    871191 8s5h:F (3.7) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    871192 8s5h:G (3.7) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    871193 8s5h:H (3.7) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    871194 8s5i:A (3.1) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    871195 8s5i:B (3.1) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    871196 8s5i:C (3.1) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    871197 8s5i:D (3.1) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    871198 8s5i:E (3.1) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    871199 8s5i:F (3.1) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    871200 8s5j:A (3.9) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).