SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    871201 8s5j:B (3.9) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    871202 8s5j:C (3.9) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    871203 8s5j:D (3.9) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    871204 8s5j:E (3.9) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    871205 8s5j:F (3.9) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    871206 8s5j:G (3.9) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    871207 8s5j:H (3.9) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    871208 8s5j:I (3.9) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    871209 8s5j:J (3.9) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    871210 8s5k:A (3.8) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    871211 8s5k:B (3.8) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    871212 8s5k:C (3.8) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    871213 8s5k:D (3.8) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    871214 8s5k:E (3.8) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    871215 8s5k:F (3.8) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    871216 8s5k:G (3.8) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    871217 8s5k:H (3.8) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    871218 8s5l:A (3.8) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    871219 8s5l:B (3.8) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    871220 8s5l:B (3.8) BS02 PLP 4.2.1.22 GO:0001958 ... P35520 38575566
    871221 8s5l:C (3.8) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    871222 8s5l:C (3.8) BS02 PLP 4.2.1.22 GO:0001958 ... P35520 38575566
    871223 8s5l:D (3.8) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    871224 8s5m:A (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    871225 8s5m:B (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    871226 8s5m:C (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    871227 8s5m:D (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    871228 8s5m:E (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    871229 8s5m:E (4.0) BS02 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    871230 8s5m:F (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    871231 8s5m:G (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    871232 8s5m:G (4.0) BS02 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    871233 8s5m:H (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    871234 8s5m:I (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    871235 8s5m:J (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    871236 8s5m:J (4.0) BS02 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    871237 8s5n:A (3.4) BS01 dna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    871238 8s5n:A (3.4) BS02 rna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    871239 8s5n:A (3.4) BS03 dna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    871240 8s5n:A (3.4) BS04 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    871241 8s5n:A (3.4) BS05 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    871242 8s5n:A (3.4) BS06 MG 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    871243 8s5n:B (3.4) BS01 dna 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    871244 8s5n:B (3.4) BS02 rna 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    871245 8s5n:B (3.4) BS03 dna 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    871246 8s5n:B (3.4) BS04 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    871247 8s5n:C (3.4) BS01 ZN ? GO:0000428 ... I3LCH3 38604172
    871248 8s5n:E (3.4) BS01 dna ? GO:0001054 ... I3LSI7 38604172
    871249 8s5n:I (3.4) BS01 ZN ? GO:0000428 ... P60899 38604172
    871250 8s5n:J (3.4) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38604172
    871251 8s5n:L (3.4) BS01 ZN ? GO:0001054 ... A0A4X1TRS6 38604172
    871252 8s5n:M (3.4) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 38604172
    871253 8s5n:M (3.4) BS02 dna 2.3.1.48 GO:0000776 ... Q00403 38604172
    871254 8s5n:M (3.4) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 38604172
    871255 8s5n:O (3.4) BS01 dna ? GO:0000785 ... P20226 38604172
    871256 8s5n:O (3.4) BS02 dna ? GO:0000785 ... P20226 38604172
    871257 8s5n:R (3.4) BS01 dna 3.6.4.12 GO:0003677 ... P13984 38604172
    871258 8s5n:R (3.4) BS02 dna 3.6.4.12 GO:0003677 ... P13984 38604172
    871259 8s5n:U (3.4) BS01 dna ? GO:0000979 ... P52655 38604172
    871260 8s5n:W (3.4) BS01 ZN ? GO:0005515 ... P29083 38604172
    871261 8s5s:A (1.85) BS01 MSS N/A GO:0006790 ... Q5SIP4 39561325
    871262 8s5u:A (3.28) BS01 VIB N/A GO:0005515 ... Q9BZV2 39358356
    871263 8s5w:A (3.05) BS01 2TA N/A GO:0005515 ... Q9BZV2 39358356
    871264 8s5x:A (1.12) BS01 CU N/A GO:0005507 ... Q89EJ6 39002715
    871265 8s5x:A (1.12) BS02 CU N/A GO:0005507 ... Q89EJ6 39002715
    871266 8s5x:A (1.12) BS03 FRU N/A GO:0005507 ... Q89EJ6 39002715
    871267 8s5y:A (1.3) BS01 CU N/A GO:0005507 ... Q89EJ6 39002715
    871268 8s5y:A (1.3) BS02 CU N/A GO:0005507 ... Q89EJ6 39002715
    871269 8s5y:A (1.3) BS03 FRU N/A GO:0005507 ... Q89EJ6 39002715
    871270 8s5z:A (3.0) BS01 A1H5D N/A GO:0005515 ... Q9BZV2 39358356
    871271 8s61:A (3.53) BS01 VIB N/A GO:0005515 ... Q9BZV2 39358356
    871272 8s62:A (3.75) BS01 A1H5C N/A GO:0005515 ... Q9BZV2 39358356
    871273 8s63:A (1.17) BS01 CU N/A GO:0005507 ... Q89EJ6 39002715
    871274 8s63:A (1.17) BS02 CU N/A GO:0005507 ... Q89EJ6 39002715
    871275 8s63:A (1.17) BS03 FRU N/A GO:0005507 ... Q89EJ6 39002715
    871276 8s64:A (1.42) BS01 FRU N/A GO:0005507 ... Q89EJ6 39002715
    871277 8s64:A (1.42) BS02 CU N/A GO:0005507 ... Q89EJ6 39002715
    871278 8s64:A (1.42) BS03 CU N/A GO:0005507 ... Q89EJ6 39002715
    871279 8s65:A (2.56) BS01 NAP N/A N/A S8ESX0 39105673
    871280 8s65:A (2.56) BS02 FOM N/A N/A S8ESX0 39105673
    871281 8s65:A (2.56) BS03 MG N/A N/A S8ESX0 39105673
    871282 8s65:A (2.56) BS04 MG N/A N/A S8ESX0 39105673
    871283 8s65:B (2.56) BS01 NAP N/A N/A S8ESX0 39105673
    871284 8s65:B (2.56) BS02 FOM N/A N/A S8ESX0 39105673
    871285 8s65:B (2.56) BS03 MG N/A N/A S8ESX0 39105673
    871286 8s68:A (1.66) BS01 CU N/A GO:0005507 ... Q89EJ6 39002715
    871287 8s68:A (1.66) BS02 CU N/A GO:0005507 ... Q89EJ6 39002715
    871288 8s68:A (1.66) BS03 FRU N/A GO:0005507 ... Q89EJ6 39002715
    871289 8s69:A (1.78) BS01 FRU N/A GO:0005507 ... Q89EJ6 39002715
    871290 8s69:A (1.78) BS02 CU N/A GO:0005507 ... Q89EJ6 39002715
    871291 8s69:A (1.78) BS03 CU N/A GO:0005507 ... Q89EJ6 39002715
    871292 8s6c:A (1.74) BS01 HEM N/A N/A N/A 39570012
    871293 8s6c:A (1.74) BS02 CA N/A N/A N/A 39570012
    871294 8s6c:A (1.74) BS03 CA N/A N/A N/A 39570012
    871295 8s6f:A (1.93) BS01 VQR N/A N/A P03313 39456193
    871296 8s6j:A (2.15) BS01 657 N/A GO:0001518 ... A0L5S6 39341837
    871297 8s6n:A (1.743) BS01 peptide N/A N/A A0A0D1DWZ5 39499630
    871298 8s6n:B (1.743) BS01 peptide N/A N/A A0A0D1DWZ5 39499630
    871299 8s6n:D (1.743) BS01 peptide N/A N/A A0A0D1DWZ5 39499630
    871300 8s6n:G (1.743) BS01 peptide N/A N/A A0A0D1DWZ5 39499630
    871301 8s6o:A (2.4) BS01 peptide N/A N/A A0A0D1DWZ5 39499630
    871302 8s6o:C (2.4) BS01 peptide N/A N/A A0A0D1DWZ5 39499630
    871303 8s6o:D (2.4) BS01 peptide N/A N/A A0A0D1DWZ5 39499630
    871304 8s6o:F (2.4) BS01 peptide N/A N/A A0A0D1DWZ5 39499630
    871305 8s6o:I (2.4) BS01 peptide N/A N/A A0A0D1DWZ5 39499630
    871306 8s6o:K (2.4) BS01 peptide N/A N/A A0A0D1DWZ5 39499630
    871307 8s6o:M (2.4) BS01 peptide N/A N/A A0A0D1DWZ5 39499630
    871308 8s6o:O (2.4) BS01 peptide N/A N/A A0A0D1DWZ5 39499630
    871309 8s6u:A (2.0) BS01 peptide N/A N/A Q4P8R9 39499630
    871310 8s6u:Q (2.0) BS01 peptide N/A N/A Q4P8R9 39499630
    871311 8s6z:B (3.05) BS01 ZN N/A N/A N/A 39760515
    871312 8s6z:C (3.05) BS01 ZN N/A N/A P10747 39760515
    871313 8s6z:E (3.05) BS01 ZN N/A N/A N/A 39760515
    871314 8s6z:E (3.05) BS02 ZN N/A N/A N/A 39760515
    871315 8s6z:F (3.05) BS01 ZN N/A N/A P10747 39760515
    871316 8s70:D (4.2) BS01 dna N/A N/A P08280 39898034
    871317 8s70:D (4.2) BS02 AGS N/A N/A P08280 39898034
    871318 8s7f:A (1.6) BS01 MN N/A GO:0005737 ... Q8FK47 39236497
    871319 8s7f:A (1.6) BS02 MN N/A GO:0005737 ... Q8FK47 39236497
    871320 8s7f:A (1.6) BS03 A1H5P N/A GO:0005737 ... Q8FK47 39236497
    871321 8s7g:C (3.43) BS01 dna N/A N/A P08280 39898034
    871322 8s7g:C (3.43) BS02 AGS N/A N/A P08280 39898034
    871323 8s7g:C (3.43) BS03 MG N/A N/A P08280 39898034
    871324 8s7g:C (3.43) BS04 AGS N/A N/A P08280 39898034
    871325 8s7g:D (3.43) BS01 dna N/A N/A P08280 39898034
    871326 8s7g:D (3.43) BS02 AGS N/A N/A P08280 39898034
    871327 8s7g:D (3.43) BS03 AGS N/A N/A P08280 39898034
    871328 8s7g:E (3.43) BS01 dna N/A N/A P08280 39898034
    871329 8s7g:E (3.43) BS02 AGS N/A N/A P08280 39898034
    871330 8s7g:E (3.43) BS03 AGS N/A N/A P08280 39898034
    871331 8s7g:F (3.43) BS01 dna N/A N/A P08280 39898034
    871332 8s7g:F (3.43) BS02 AGS N/A N/A P08280 39898034
    871333 8s7g:F (3.43) BS03 AGS N/A N/A P08280 39898034
    871334 8s7g:G (3.43) BS01 dna N/A N/A P08280 39898034
    871335 8s7g:G (3.43) BS02 AGS N/A N/A P08280 39898034
    871336 8s7g:G (3.43) BS03 AGS N/A N/A P08280 39898034
    871337 8s7g:H (3.43) BS01 dna N/A N/A P08280 39898034
    871338 8s7g:H (3.43) BS02 AGS N/A N/A P08280 39898034
    871339 8s7g:H (3.43) BS03 AGS N/A N/A P08280 39898034
    871340 8s7g:I (3.43) BS01 dna N/A N/A P08280 39898034
    871341 8s7g:I (3.43) BS02 AGS N/A N/A P08280 39898034
    871342 8s7g:I (3.43) BS03 AGS N/A N/A P08280 39898034
    871343 8s7g:J (3.43) BS01 dna N/A N/A P08280 39898034
    871344 8s7g:J (3.43) BS02 AGS N/A N/A P08280 39898034
    871345 8s7g:J (3.43) BS03 AGS N/A N/A P08280 39898034
    871346 8s7g:K (3.43) BS01 dna N/A N/A P08280 39898034
    871347 8s7g:K (3.43) BS02 AGS N/A N/A P08280 39898034
    871348 8s7g:K (3.43) BS03 AGS N/A N/A P08280 39898034
    871349 8s7g:L (3.43) BS01 dna N/A N/A P08280 39898034
    871350 8s7g:L (3.43) BS02 MG N/A N/A P08280 39898034
    871351 8s7g:L (3.43) BS03 AGS N/A N/A P08280 39898034
    871352 8s7g:L (3.43) BS04 AGS N/A N/A P08280 39898034
    871353 8s7g:M (3.43) BS01 dna N/A N/A P08280 39898034
    871354 8s7g:M (3.43) BS02 MG N/A N/A P08280 39898034
    871355 8s7g:M (3.43) BS03 AGS N/A N/A P08280 39898034
    871356 8s7j:A (2.26) BS01 A1H9Q N/A N/A P21404 39292620
    871357 8s7n:A (1.8) BS01 FAD N/A N/A A0A2S7K3M2 39781101
    871358 8s7n:A (1.8) BS02 EOL N/A N/A A0A2S7K3M2 39781101
    871359 8s7n:B (1.8) BS01 FAD N/A N/A A0A2S7K3M2 39781101
    871360 8s7n:B (1.8) BS02 EOL N/A N/A A0A2S7K3M2 39781101
    871361 8s7p:A (2.35) BS01 FAD N/A N/A A0A2S7K3M2 39781101
    871362 8s7p:B (2.35) BS01 FAD N/A N/A A0A2S7K3M2 39781101
    871363 8s7p:C (2.35) BS01 FAD N/A N/A A0A2S7K3M2 39781101
    871364 8s7q:A (2.4) BS01 FAD N/A N/A A0A2S7K3M2 39781101
    871365 8s7q:B (2.4) BS01 FAD N/A N/A A0A2S7K3M2 39781101
    871366 8s7r:A (1.9) BS01 FAD N/A N/A A0A2S7K3M2 39781101
    871367 8s7r:B (1.9) BS01 FAD N/A N/A A0A2S7K3M2 39781101
    871368 8s7r:C (1.9) BS01 FAD N/A N/A A0A2S7K3M2 39781101
    871369 8s7s:A (2.5) BS01 FAD N/A N/A A0A2S7K3M2 39781101
    871370 8s7s:B (2.5) BS01 FAD N/A N/A A0A2S7K3M2 39781101
    871371 8s7s:C (2.5) BS01 FAD N/A N/A A0A2S7K3M2 39781101
    871372 8s7t:A (2.1) BS01 FAD N/A N/A A0A2S7K3M2 39781101
    871373 8s7t:B (2.1) BS01 FAD N/A N/A A0A2S7K3M2 39781101
    871374 8s7t:C (2.1) BS01 FAD N/A N/A A0A2S7K3M2 39781101
    871375 8s7u:A (1.8) BS01 FAD N/A N/A A0A2S7K3M2 39781101
    871376 8s7u:B (1.8) BS01 FAD N/A N/A A0A2S7K3M2 39781101
    871377 8s7w:A (2.1) BS01 FAD N/A N/A A0A2S7K3M2 39781101
    871378 8s7w:B (2.1) BS01 FAD N/A N/A A0A2S7K3M2 39781101
    871379 8s84:A (2.35) BS01 dna N/A GO:0003677 ... D0VWU9 39673482
    871380 8s84:A (2.35) BS02 dna N/A GO:0003677 ... D0VWU9 39673482
    871381 8s84:A (2.35) BS03 MG N/A GO:0003677 ... D0VWU9 39673482
    871382 8s84:A (2.35) BS04 MG N/A GO:0003677 ... D0VWU9 39673482
    871383 8s84:A (2.35) BS05 XG4 N/A GO:0003677 ... D0VWU9 39673482
    871384 8s84:A (2.35) BS06 MG N/A GO:0003677 ... D0VWU9 39673482
    871385 8s84:A (2.35) BS07 MG N/A GO:0003677 ... D0VWU9 39673482
    871386 8s85:A (1.75) BS01 A1H5R N/A N/A P23458 39447537
    871387 8s85:B (1.75) BS01 A1H5R N/A N/A P23458 39447537
    871388 8s87:A (1.82) BS01 MG N/A GO:0003677 ... D0VWU9 39673482
    871389 8s87:A (1.82) BS02 MG N/A GO:0003677 ... D0VWU9 39673482
    871390 8s87:A (1.82) BS03 MG N/A GO:0003677 ... D0VWU9 39673482
    871391 8s87:A (1.82) BS04 MG N/A GO:0003677 ... D0VWU9 39673482
    871392 8s87:A (1.82) BS05 MG N/A GO:0003677 ... D0VWU9 39673482
    871393 8s87:A (1.82) BS06 MG N/A GO:0003677 ... D0VWU9 39673482
    871394 8s87:A (1.82) BS07 MG N/A GO:0003677 ... D0VWU9 39673482
    871395 8s87:A (1.82) BS08 MG N/A GO:0003677 ... D0VWU9 39673482
    871396 8s8a:A (1.5) BS01 UK9 3.1.3.16
    3.1.3.74
    GO:0000287 ... Q96GD0 38856179
    871397 8s8a:A (1.5) BS02 MG 3.1.3.16
    3.1.3.74
    GO:0000287 ... Q96GD0 38856179
    871398 8s8c:A (1.9) BS01 GDP N/A GO:0003924 ... P01116 38924388
    871399 8s8c:A (1.9) BS02 A1H5U N/A GO:0003924 ... P01116 38924388
    871400 8s8d:A (3.45) BS01 rna N/A GO:0000028 ... Q6CN12 39193907

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).