SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    871401 8s8d:B (3.45) BS01 rna N/A GO:0003735 ... Q6CWD0 39193907
    871402 8s8d:C (3.45) BS01 rna N/A GO:0003723 ... Q6CKL3 39193907
    871403 8s8d:C (3.45) BS02 rna N/A GO:0003723 ... Q6CKL3 39193907
    871404 8s8d:D (3.45) BS01 rna N/A GO:0003723 ... Q6CRK7 39193907
    871405 8s8d:D (3.45) BS02 rna N/A GO:0003723 ... Q6CRK7 39193907
    871406 8s8d:E (3.45) BS01 rna N/A GO:0003723 ... Q6CWJ2 39193907
    871407 8s8d:F (3.45) BS01 rna N/A GO:0003723 ... Q6CRA3 39193907
    871408 8s8d:G (3.45) BS01 rna N/A GO:0003735 ... Q6CM04 39193907
    871409 8s8d:H (3.45) BS01 rna N/A GO:0003735 ... Q6CTD6 39193907
    871410 8s8d:I (3.45) BS01 rna N/A GO:0003735 ... Q6CMG3 39193907
    871411 8s8d:J (3.45) BS01 rna N/A GO:0003723 ... Q6CM18 39193907
    871412 8s8d:K (3.45) BS01 rna N/A GO:0003723 ... Q6CVZ5 39193907
    871413 8s8d:L (3.45) BS01 rna N/A GO:0003735 ... Q6CX80 39193907
    871414 8s8d:M (3.45) BS01 rna N/A GO:0003735 ... Q6CLU4 39193907
    871415 8s8d:N (3.45) BS01 rna N/A GO:0003735 ... Q6CJK0 39193907
    871416 8s8d:O (3.45) BS01 rna N/A GO:0003735 ... P27069 39193907
    871417 8s8d:P (3.45) BS01 rna N/A GO:0000028 ... Q6CKV4 39193907
    871418 8s8d:Q (3.45) BS01 rna N/A GO:0000462 ... Q875N2 39193907
    871419 8s8d:R (3.45) BS01 rna N/A GO:0003735 ... Q6CWU3 39193907
    871420 8s8d:S (3.45) BS01 rna N/A GO:0003676 ... Q6CWT9 39193907
    871421 8s8d:T (3.45) BS01 rna N/A GO:0000028 ... Q6CXM0 39193907
    871422 8s8d:U (3.45) BS01 rna N/A GO:0003735 ... Q6CIM1 39193907
    871423 8s8d:V (3.45) BS01 rna N/A GO:0003735 ... Q6CXT6 39193907
    871424 8s8d:W (3.45) BS01 rna N/A GO:0003735 ... Q6CW21 39193907
    871425 8s8d:X (3.45) BS01 rna N/A GO:0003735 ... F2Z602 39193907
    871426 8s8d:Y (3.45) BS01 rna N/A GO:0003735 ... Q6CU44 39193907
    871427 8s8d:Z (3.45) BS01 rna N/A GO:0005840 ... Q6CW78 39193907
    871428 8s8d:a (3.45) BS01 rna N/A GO:0003729 ... Q6CS01 39193907
    871429 8s8d:a (3.45) BS02 rna N/A GO:0003729 ... Q6CS01 39193907
    871430 8s8d:a (3.45) BS03 ZN N/A GO:0003729 ... Q6CS01 39193907
    871431 8s8d:b (3.45) BS01 rna N/A GO:0003735 ... Q6CNL2 39193907
    871432 8s8d:b (3.45) BS02 ZN N/A GO:0003735 ... Q6CNL2 39193907
    871433 8s8d:c (3.45) BS01 rna N/A GO:0000028 ... P33285 39193907
    871434 8s8d:c (3.45) BS02 rna N/A GO:0000028 ... P33285 39193907
    871435 8s8d:d (3.45) BS01 rna N/A GO:0002181 ... Q6CPG3 39193907
    871436 8s8d:e (3.45) BS01 rna N/A GO:0003735 ... Q6CUH5 39193907
    871437 8s8d:f (3.45) BS01 rna N/A GO:0003735 ... P69061 39193907
    871438 8s8d:f (3.45) BS02 ZN N/A GO:0003735 ... P69061 39193907
    871439 8s8d:g (3.45) BS01 rna N/A GO:0006417 ... Q6CNI7 39193907
    871440 8s8d:i (3.45) BS01 rna N/A GO:0001677 ... P38912 39193907
    871441 8s8d:i (3.45) BS02 rna N/A GO:0001677 ... P38912 39193907
    871442 8s8d:j (3.45) BS01 rna N/A GO:0001731 ... P20459 39193907
    871443 8s8d:j (3.45) BS02 rna N/A GO:0001731 ... P20459 39193907
    871444 8s8d:k (3.45) BS01 rna N/A GO:0000049 ... P32481 39193907
    871445 8s8d:k (3.45) BS02 peptide N/A GO:0000049 ... P32481 39193907
    871446 8s8d:k (3.45) BS03 MET N/A GO:0000049 ... P32481 39193907
    871447 8s8e:A (3.85) BS01 rna N/A GO:0000028 ... Q6CN12 39193907
    871448 8s8e:B (3.85) BS01 rna N/A GO:0003735 ... Q6CWD0 39193907
    871449 8s8e:C (3.85) BS01 rna N/A GO:0003723 ... Q6CKL3 39193907
    871450 8s8e:C (3.85) BS02 rna N/A GO:0003723 ... Q6CKL3 39193907
    871451 8s8e:D (3.85) BS01 rna N/A GO:0003723 ... Q6CRK7 39193907
    871452 8s8e:D (3.85) BS02 rna N/A GO:0003723 ... Q6CRK7 39193907
    871453 8s8e:E (3.85) BS01 rna N/A GO:0003723 ... Q6CWJ2 39193907
    871454 8s8e:F (3.85) BS01 rna N/A GO:0003723 ... Q6CRA3 39193907
    871455 8s8e:F (3.85) BS02 rna N/A GO:0003723 ... Q6CRA3 39193907
    871456 8s8e:G (3.85) BS01 rna N/A GO:0003735 ... Q6CM04 39193907
    871457 8s8e:H (3.85) BS01 rna N/A GO:0003735 ... Q6CTD6 39193907
    871458 8s8e:I (3.85) BS01 rna N/A GO:0003735 ... Q6CMG3 39193907
    871459 8s8e:J (3.85) BS01 rna N/A GO:0003723 ... Q6CM18 39193907
    871460 8s8e:K (3.85) BS01 rna N/A GO:0003723 ... Q6CVZ5 39193907
    871461 8s8e:L (3.85) BS01 rna N/A GO:0003735 ... Q6CX80 39193907
    871462 8s8e:M (3.85) BS01 rna N/A GO:0003735 ... Q6CLU4 39193907
    871463 8s8e:N (3.85) BS01 rna N/A GO:0003735 ... Q6CJK0 39193907
    871464 8s8e:O (3.85) BS01 rna N/A GO:0003735 ... P27069 39193907
    871465 8s8e:P (3.85) BS01 rna N/A GO:0000028 ... Q6CKV4 39193907
    871466 8s8e:Q (3.85) BS01 rna N/A GO:0000462 ... Q875N2 39193907
    871467 8s8e:R (3.85) BS01 rna N/A GO:0003735 ... Q6CWU3 39193907
    871468 8s8e:S (3.85) BS01 rna N/A GO:0003676 ... Q6CWT9 39193907
    871469 8s8e:T (3.85) BS01 rna N/A GO:0000028 ... Q6CXM0 39193907
    871470 8s8e:U (3.85) BS01 rna N/A GO:0003735 ... Q6CIM1 39193907
    871471 8s8e:V (3.85) BS01 rna N/A GO:0003735 ... Q6CXT6 39193907
    871472 8s8e:W (3.85) BS01 rna N/A GO:0003735 ... Q6CW21 39193907
    871473 8s8e:X (3.85) BS01 rna N/A GO:0003735 ... F2Z602 39193907
    871474 8s8e:Y (3.85) BS01 rna N/A GO:0003735 ... Q6CU44 39193907
    871475 8s8e:Z (3.85) BS01 rna N/A GO:0005840 ... Q6CW78 39193907
    871476 8s8e:a (3.85) BS01 rna N/A GO:0003729 ... Q6CS01 39193907
    871477 8s8e:a (3.85) BS02 rna N/A GO:0003729 ... Q6CS01 39193907
    871478 8s8e:a (3.85) BS03 ZN N/A GO:0003729 ... Q6CS01 39193907
    871479 8s8e:b (3.85) BS01 rna N/A GO:0003735 ... Q6CNL2 39193907
    871480 8s8e:b (3.85) BS02 ZN N/A GO:0003735 ... Q6CNL2 39193907
    871481 8s8e:c (3.85) BS01 rna N/A GO:0000028 ... P33285 39193907
    871482 8s8e:c (3.85) BS02 rna N/A GO:0000028 ... P33285 39193907
    871483 8s8e:d (3.85) BS01 rna N/A GO:0002181 ... Q6CPG3 39193907
    871484 8s8e:e (3.85) BS01 rna N/A GO:0003735 ... Q6CUH5 39193907
    871485 8s8e:f (3.85) BS01 rna N/A GO:0003735 ... P69061 39193907
    871486 8s8e:f (3.85) BS02 ZN N/A GO:0003735 ... P69061 39193907
    871487 8s8e:g (3.85) BS01 rna N/A GO:0006417 ... Q6CNI7 39193907
    871488 8s8e:i (3.85) BS01 rna N/A GO:0001677 ... P38912 39193907
    871489 8s8e:i (3.85) BS02 rna N/A GO:0001677 ... P38912 39193907
    871490 8s8e:i (3.85) BS03 MG N/A GO:0001677 ... P38912 39193907
    871491 8s8e:j (3.85) BS01 rna N/A GO:0001731 ... P20459 39193907
    871492 8s8e:k (3.85) BS01 rna N/A GO:0000049 ... P32481 39193907
    871493 8s8e:k (3.85) BS02 peptide N/A GO:0000049 ... P32481 39193907
    871494 8s8e:k (3.85) BS03 MET N/A GO:0000049 ... P32481 39193907
    871495 8s8e:p (3.85) BS01 rna N/A GO:0001732 ... P32497 39193907
    871496 8s8f:A (3.95) BS01 rna N/A GO:0000028 ... Q6CN12 39193907
    871497 8s8f:B (3.95) BS01 rna N/A GO:0003735 ... Q6CWD0 39193907
    871498 8s8f:C (3.95) BS01 rna N/A GO:0003723 ... Q6CKL3 39193907
    871499 8s8f:D (3.95) BS01 rna N/A GO:0003723 ... Q6CRK7 39193907
    871500 8s8f:D (3.95) BS02 rna N/A GO:0003723 ... Q6CRK7 39193907
    871501 8s8f:E (3.95) BS01 rna N/A GO:0003723 ... Q6CWJ2 39193907
    871502 8s8f:F (3.95) BS01 rna N/A GO:0003723 ... Q6CRA3 39193907
    871503 8s8f:F (3.95) BS02 rna N/A GO:0003723 ... Q6CRA3 39193907
    871504 8s8f:G (3.95) BS01 rna N/A GO:0003735 ... Q6CM04 39193907
    871505 8s8f:H (3.95) BS01 rna N/A GO:0003735 ... Q6CTD6 39193907
    871506 8s8f:I (3.95) BS01 rna N/A GO:0003735 ... Q6CMG3 39193907
    871507 8s8f:J (3.95) BS01 rna N/A GO:0003723 ... Q6CM18 39193907
    871508 8s8f:K (3.95) BS01 rna N/A GO:0003723 ... Q6CVZ5 39193907
    871509 8s8f:L (3.95) BS01 rna N/A GO:0003735 ... Q6CX80 39193907
    871510 8s8f:M (3.95) BS01 rna N/A GO:0003735 ... Q6CLU4 39193907
    871511 8s8f:N (3.95) BS01 rna N/A GO:0003735 ... Q6CJK0 39193907
    871512 8s8f:O (3.95) BS01 rna N/A GO:0003735 ... P27069 39193907
    871513 8s8f:P (3.95) BS01 rna N/A GO:0000028 ... Q6CKV4 39193907
    871514 8s8f:Q (3.95) BS01 rna N/A GO:0000462 ... Q875N2 39193907
    871515 8s8f:R (3.95) BS01 rna N/A GO:0003735 ... Q6CWU3 39193907
    871516 8s8f:S (3.95) BS01 rna N/A GO:0003676 ... Q6CWT9 39193907
    871517 8s8f:T (3.95) BS01 rna N/A GO:0000028 ... Q6CXM0 39193907
    871518 8s8f:U (3.95) BS01 rna N/A GO:0003735 ... Q6CIM1 39193907
    871519 8s8f:V (3.95) BS01 rna N/A GO:0003735 ... Q6CXT6 39193907
    871520 8s8f:W (3.95) BS01 rna N/A GO:0003735 ... Q6CW21 39193907
    871521 8s8f:X (3.95) BS01 rna N/A GO:0003735 ... F2Z602 39193907
    871522 8s8f:Y (3.95) BS01 rna N/A GO:0003735 ... Q6CU44 39193907
    871523 8s8f:Z (3.95) BS01 rna N/A GO:0005840 ... Q6CW78 39193907
    871524 8s8f:a (3.95) BS01 rna N/A GO:0003729 ... Q6CS01 39193907
    871525 8s8f:a (3.95) BS02 rna N/A GO:0003729 ... Q6CS01 39193907
    871526 8s8f:a (3.95) BS03 ZN N/A GO:0003729 ... Q6CS01 39193907
    871527 8s8f:b (3.95) BS01 rna N/A GO:0003735 ... Q6CNL2 39193907
    871528 8s8f:b (3.95) BS02 ZN N/A GO:0003735 ... Q6CNL2 39193907
    871529 8s8f:c (3.95) BS01 rna N/A GO:0000028 ... P33285 39193907
    871530 8s8f:c (3.95) BS02 rna N/A GO:0000028 ... P33285 39193907
    871531 8s8f:d (3.95) BS01 rna N/A GO:0002181 ... Q6CPG3 39193907
    871532 8s8f:e (3.95) BS01 rna N/A GO:0003735 ... Q6CUH5 39193907
    871533 8s8f:f (3.95) BS01 rna N/A GO:0003735 ... P69061 39193907
    871534 8s8f:g (3.95) BS01 rna N/A GO:0006417 ... Q6CNI7 39193907
    871535 8s8f:i (3.95) BS01 rna N/A GO:0001677 ... P38912 39193907
    871536 8s8f:i (3.95) BS02 MG N/A GO:0001677 ... P38912 39193907
    871537 8s8f:j (3.95) BS01 rna N/A GO:0001731 ... P20459 39193907
    871538 8s8f:k (3.95) BS01 rna N/A GO:0000049 ... P32481 39193907
    871539 8s8f:k (3.95) BS02 peptide N/A GO:0000049 ... P32481 39193907
    871540 8s8f:k (3.95) BS03 MET N/A GO:0000049 ... P32481 39193907
    871541 8s8f:m (3.95) BS01 rna N/A GO:0001731 ... P32911 39193907
    871542 8s8f:m (3.95) BS02 rna N/A GO:0001731 ... P32911 39193907
    871543 8s8g:A (4.0) BS01 rna N/A GO:0000028 ... Q6CN12 39193907
    871544 8s8g:B (4.0) BS01 rna N/A GO:0003735 ... Q6CWD0 39193907
    871545 8s8g:C (4.0) BS01 rna N/A GO:0003723 ... Q6CKL3 39193907
    871546 8s8g:C (4.0) BS02 rna N/A GO:0003723 ... Q6CKL3 39193907
    871547 8s8g:D (4.0) BS01 rna N/A GO:0003723 ... Q6CRK7 39193907
    871548 8s8g:D (4.0) BS02 rna N/A GO:0003723 ... Q6CRK7 39193907
    871549 8s8g:E (4.0) BS01 rna N/A GO:0003723 ... Q6CWJ2 39193907
    871550 8s8g:F (4.0) BS01 rna N/A GO:0003723 ... Q6CRA3 39193907
    871551 8s8g:F (4.0) BS02 rna N/A GO:0003723 ... Q6CRA3 39193907
    871552 8s8g:G (4.0) BS01 rna N/A GO:0003735 ... Q6CM04 39193907
    871553 8s8g:H (4.0) BS01 rna N/A GO:0003735 ... Q6CTD6 39193907
    871554 8s8g:I (4.0) BS01 rna N/A GO:0003735 ... Q6CMG3 39193907
    871555 8s8g:J (4.0) BS01 rna N/A GO:0003723 ... Q6CM18 39193907
    871556 8s8g:K (4.0) BS01 rna N/A GO:0003723 ... Q6CVZ5 39193907
    871557 8s8g:L (4.0) BS01 rna N/A GO:0003735 ... Q6CX80 39193907
    871558 8s8g:M (4.0) BS01 rna N/A GO:0003735 ... Q6CLU4 39193907
    871559 8s8g:N (4.0) BS01 rna N/A GO:0003735 ... Q6CJK0 39193907
    871560 8s8g:O (4.0) BS01 rna N/A GO:0003735 ... P27069 39193907
    871561 8s8g:P (4.0) BS01 rna N/A GO:0000028 ... Q6CKV4 39193907
    871562 8s8g:Q (4.0) BS01 rna N/A GO:0000462 ... Q875N2 39193907
    871563 8s8g:R (4.0) BS01 rna N/A GO:0003735 ... Q6CWU3 39193907
    871564 8s8g:S (4.0) BS01 rna N/A GO:0003676 ... Q6CWT9 39193907
    871565 8s8g:T (4.0) BS01 rna N/A GO:0000028 ... Q6CXM0 39193907
    871566 8s8g:U (4.0) BS01 rna N/A GO:0003735 ... Q6CIM1 39193907
    871567 8s8g:W (4.0) BS01 rna N/A GO:0003735 ... Q6CW21 39193907
    871568 8s8g:X (4.0) BS01 rna N/A GO:0003735 ... F2Z602 39193907
    871569 8s8g:Y (4.0) BS01 rna N/A GO:0003735 ... Q6CU44 39193907
    871570 8s8g:Z (4.0) BS01 rna N/A GO:0005840 ... Q6CW78 39193907
    871571 8s8g:a (4.0) BS01 rna N/A GO:0003729 ... Q6CS01 39193907
    871572 8s8g:a (4.0) BS02 rna N/A GO:0003729 ... Q6CS01 39193907
    871573 8s8g:a (4.0) BS03 ZN N/A GO:0003729 ... Q6CS01 39193907
    871574 8s8g:b (4.0) BS01 rna N/A GO:0003735 ... Q6CNL2 39193907
    871575 8s8g:b (4.0) BS02 ZN N/A GO:0003735 ... Q6CNL2 39193907
    871576 8s8g:c (4.0) BS01 rna N/A GO:0000028 ... P33285 39193907
    871577 8s8g:c (4.0) BS02 rna N/A GO:0000028 ... P33285 39193907
    871578 8s8g:d (4.0) BS01 rna N/A GO:0002181 ... Q6CPG3 39193907
    871579 8s8g:e (4.0) BS01 rna N/A GO:0003735 ... Q6CUH5 39193907
    871580 8s8g:f (4.0) BS01 rna N/A GO:0003735 ... P69061 39193907
    871581 8s8g:g (4.0) BS01 rna N/A GO:0006417 ... Q6CNI7 39193907
    871582 8s8g:i (4.0) BS01 rna N/A GO:0001677 ... P38912 39193907
    871583 8s8g:i (4.0) BS02 rna N/A GO:0001677 ... P38912 39193907
    871584 8s8g:j (4.0) BS01 rna N/A GO:0001731 ... P20459 39193907
    871585 8s8g:k (4.0) BS01 rna N/A GO:0000049 ... P32481 39193907
    871586 8s8g:k (4.0) BS02 MET N/A GO:0000049 ... P32481 39193907
    871587 8s8h:A (4.0) BS01 rna N/A GO:0000028 ... Q6CN12 39193907
    871588 8s8h:B (4.0) BS01 rna N/A GO:0003735 ... Q6CWD0 39193907
    871589 8s8h:C (4.0) BS01 rna N/A GO:0003723 ... Q6CKL3 39193907
    871590 8s8h:C (4.0) BS02 rna N/A GO:0003723 ... Q6CKL3 39193907
    871591 8s8h:D (4.0) BS01 rna N/A GO:0003723 ... Q6CRK7 39193907
    871592 8s8h:D (4.0) BS02 rna N/A GO:0003723 ... Q6CRK7 39193907
    871593 8s8h:E (4.0) BS01 rna N/A GO:0003723 ... Q6CWJ2 39193907
    871594 8s8h:F (4.0) BS01 rna N/A GO:0003723 ... Q6CRA3 39193907
    871595 8s8h:F (4.0) BS02 rna N/A GO:0003723 ... Q6CRA3 39193907
    871596 8s8h:G (4.0) BS01 rna N/A GO:0003735 ... Q6CM04 39193907
    871597 8s8h:H (4.0) BS01 rna N/A GO:0003735 ... Q6CTD6 39193907
    871598 8s8h:I (4.0) BS01 rna N/A GO:0003735 ... Q6CMG3 39193907
    871599 8s8h:J (4.0) BS01 rna N/A GO:0003723 ... Q6CM18 39193907
    871600 8s8h:K (4.0) BS01 rna N/A GO:0003723 ... Q6CVZ5 39193907

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).